Wall clock time and date at job start Sat Apr 11 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35997 * 126.29336 * 2 1 4 4 N 1.30213 * 110.17729 * 179.97438 * 3 2 1 5 5 C 1.35433 * 109.58034 * 359.97438 * 4 3 2 6 6 C 1.39898 * 133.81279 * 179.97438 * 5 4 3 7 7 C 1.36992 * 118.35721 * 179.97438 * 6 5 4 8 8 C 1.39725 * 119.59967 * 0.26256 * 7 6 5 9 9 C 1.47978 * 119.42481 * 179.74303 * 8 7 6 10 10 O 1.21536 * 120.00028 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99925 * 179.97438 * 9 8 7 12 12 C 1.47400 * 125.58639 * 0.02562 * 11 9 8 13 13 C 1.54857 * 104.81169 * 204.60646 * 12 11 9 14 14 C 1.55126 * 101.77857 * 322.82068 * 13 12 11 15 15 H 1.08989 * 113.46472 * 158.33447 * 14 13 12 16 16 C 1.54043 * 108.25396 * 285.18242 * 14 13 12 17 17 N 1.46704 * 106.82851 * 135.80657 * 16 14 13 18 18 C 1.36940 * 125.32429 * 161.84451 * 17 16 14 19 19 H 1.07997 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00081 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00280 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47026 * 59.99703 * 22 20 18 24 24 H 1.48501 * 109.47208 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46862 * 299.99815 * 22 20 18 26 26 C 1.46632 * 109.35572 * 341.81490 * 17 16 14 27 27 C 1.46727 * 125.59182 * 179.71878 * 11 9 8 28 28 H 1.09006 * 111.32891 * 56.12716 * 27 11 9 29 29 N 1.32656 * 121.14473 * 359.44517 * 8 7 6 30 30 C 1.31881 * 121.36501 * 0.58201 * 29 8 7 31 31 H 1.08993 * 109.47160 * 270.02915 * 1 2 3 32 32 H 1.09006 * 109.46608 * 30.02721 * 1 2 3 33 33 H 1.08996 * 109.47161 * 150.02644 * 1 2 3 34 34 H 1.07999 * 124.90765 * 359.97438 * 3 2 1 35 35 H 1.07994 * 120.81959 * 0.02773 * 6 5 4 36 36 H 1.08002 * 120.19519 * 179.97438 * 7 6 5 37 37 H 1.09001 * 110.37511 * 323.44305 * 12 11 9 38 38 H 1.09005 * 110.37308 * 85.77769 * 12 11 9 39 39 H 1.09007 * 110.96724 * 80.93959 * 13 12 11 40 40 H 1.08999 * 110.96784 * 204.69569 * 13 12 11 41 41 H 1.08996 * 109.98998 * 255.14692 * 16 14 13 42 42 H 1.09004 * 109.99102 * 16.46368 * 16 14 13 43 43 H 0.96993 * 120.00050 * 179.97438 * 21 20 18 44 44 H 1.09009 * 109.75539 * 120.92914 * 26 17 16 45 45 H 1.09001 * 109.76411 * 241.62814 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2701 1.0961 0.0000 4 7 3.5210 0.7347 0.0005 5 6 3.6029 -0.6172 0.0015 6 6 4.6690 -1.5229 0.0019 7 6 4.3844 -2.8629 0.0035 8 6 3.0526 -3.2856 -0.0010 9 6 2.7496 -4.7341 -0.0050 10 8 3.6554 -5.5444 -0.0049 11 7 1.4692 -5.1546 -0.0088 12 6 0.2802 -4.2835 -0.0099 13 6 -0.8451 -5.1487 0.6092 14 6 -0.5221 -6.5506 0.0291 15 1 -0.9467 -7.3691 0.6102 16 6 -0.9429 -6.5685 -1.4526 17 7 0.1441 -7.2159 -2.1951 18 6 0.0375 -7.7460 -3.4533 19 1 -0.9056 -7.7061 -3.9779 20 6 1.1417 -8.3347 -4.0542 21 7 2.2913 -8.3829 -3.4150 22 14 0.9962 -9.0584 -5.7702 23 1 0.5937 -7.9938 -6.7239 24 1 2.3064 -9.6232 -6.1820 25 1 -0.0275 -10.1343 -5.7684 26 6 1.3628 -7.2061 -1.3798 27 6 1.0302 -6.5547 -0.0189 28 1 1.4510 -7.1082 0.8205 29 7 2.0552 -2.4111 0.0043 30 6 2.2815 -1.1118 0.0025 31 1 -0.3633 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3633 -0.8902 -0.5134 34 1 1.9220 2.1185 -0.0004 35 1 5.6912 -1.1743 0.0019 36 1 5.1847 -3.5882 0.0035 37 1 0.4577 -3.3983 0.6008 38 1 0.0209 -3.9965 -1.0291 39 1 -0.7804 -5.1524 1.6973 40 1 -1.8262 -4.8067 0.2795 41 1 -1.8653 -7.1370 -1.5711 42 1 -1.0843 -5.5492 -1.8121 43 1 3.0627 -8.7946 -3.8348 44 1 1.7035 -8.2282 -1.2140 45 1 2.1411 -6.6362 -1.8872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076237876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:58 Heat of formation + Delta-G solvation = 89.987001 kcal Electronic energy + Delta-G solvation = -30320.566924 eV Core-core repulsion = 26339.849460 eV Total energy + Delta-G solvation = -3980.717464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.44598 -41.69278 -39.95916 -38.65961 -36.59211 -35.58017 -34.02353 -32.99762 -32.43588 -31.35714 -30.24653 -28.06996 -27.99925 -26.62454 -25.98867 -24.38129 -23.55170 -22.65775 -21.91233 -21.17040 -20.47224 -19.06791 -18.85962 -18.60447 -17.89508 -17.45110 -17.17435 -16.87030 -16.27548 -15.86333 -15.75699 -15.64945 -15.43411 -14.79503 -14.67011 -14.45997 -14.38108 -14.12180 -13.95401 -13.91748 -13.44930 -13.43450 -13.28674 -12.98644 -12.90995 -12.79706 -12.50999 -12.25059 -12.08649 -11.87648 -11.86202 -11.77942 -11.57779 -11.40121 -11.26942 -10.74243 -10.23273 -9.87137 -9.72760 -9.52710 -8.91181 -7.84329 -5.23362 -0.69006 0.07686 1.26499 1.39579 1.41308 1.45976 1.52670 1.86205 1.97362 2.47423 2.73233 2.82335 3.18612 3.31937 3.37044 3.55601 3.59164 3.71148 3.81481 3.86931 3.98696 4.10862 4.18383 4.32452 4.42891 4.45475 4.49318 4.51891 4.64073 4.74509 4.77876 4.79638 4.88029 4.94809 4.99669 5.09730 5.12706 5.18120 5.28997 5.38205 5.42821 5.44446 5.62162 5.76727 5.90698 6.17731 6.43017 6.55120 6.61967 7.03943 7.07906 7.77714 8.40103 9.23941 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.003403 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.842637 B = 8225.624056 C = 8671.754240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.481 5.481 3 C 0.308 3.692 4 N -0.528 5.528 5 C 0.012 3.988 6 C -0.028 4.028 7 C -0.129 4.129 8 C 0.103 3.897 9 C 0.572 3.428 10 O -0.569 6.569 11 N -0.584 5.584 12 C 0.108 3.892 13 C -0.109 4.109 14 C -0.097 4.097 15 H 0.121 0.879 16 C 0.137 3.863 17 N -0.624 5.624 18 C -0.245 4.245 19 H 0.089 0.911 20 C -0.071 4.071 21 N -0.952 5.952 22 Si 0.981 3.019 23 H -0.276 1.276 24 H -0.298 1.298 25 H -0.270 1.270 26 C 0.197 3.803 27 C 0.114 3.886 28 H 0.083 0.917 29 N -0.444 5.444 30 C 0.210 3.790 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.280 0.720 35 H 0.172 0.828 36 H 0.154 0.846 37 H 0.114 0.886 38 H 0.048 0.952 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.048 0.952 42 H 0.025 0.975 43 H 0.244 0.756 44 H 0.005 0.995 45 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.920 22.948 12.547 27.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.173 5.173 3 C 0.022 3.978 4 N -0.248 5.248 5 C -0.110 4.110 6 C -0.055 4.055 7 C -0.153 4.153 8 C -0.044 4.044 9 C 0.360 3.640 10 O -0.448 6.448 11 N -0.315 5.315 12 C -0.014 4.014 13 C -0.147 4.147 14 C -0.116 4.116 15 H 0.139 0.861 16 C 0.012 3.988 17 N -0.350 5.350 18 C -0.374 4.374 19 H 0.107 0.893 20 C -0.263 4.263 21 N -0.601 5.601 22 Si 0.809 3.191 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.196 1.196 26 C 0.071 3.929 27 C 0.009 3.991 28 H 0.101 0.899 29 N -0.160 5.160 30 C -0.028 4.028 31 H 0.113 0.887 32 H 0.147 0.853 33 H 0.097 0.903 34 H 0.295 0.705 35 H 0.190 0.810 36 H 0.172 0.828 37 H 0.132 0.868 38 H 0.066 0.934 39 H 0.115 0.885 40 H 0.131 0.869 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.053 0.947 44 H 0.023 0.977 45 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -7.644 22.703 12.404 26.977 hybrid contribution 0.837 -1.305 -1.350 2.056 sum -6.807 21.398 11.055 25.028 Atomic orbital electron populations 1.22426 0.72479 1.06484 1.05391 1.45420 1.09295 1.03157 1.59414 1.26694 0.83725 0.94696 0.92654 1.70464 1.20488 1.09441 1.24379 1.20158 0.93639 0.92448 1.04729 1.20651 0.99769 0.89754 0.95290 1.21574 0.96418 0.96979 1.00365 1.20584 0.90378 0.91321 1.02152 1.17845 0.81908 0.87176 0.77090 1.90788 1.46089 1.55376 1.52514 1.48296 1.05592 1.08046 1.69575 1.22759 0.83140 0.94447 1.01042 1.22885 0.98964 0.91590 1.01261 1.23161 0.91318 1.00550 0.96608 0.86073 1.21563 0.91308 0.95649 0.90241 1.44505 1.07300 1.68115 1.15089 1.19466 0.96548 1.30109 0.91286 0.89310 1.25780 0.95469 1.02246 1.02845 1.70280 1.01119 1.50167 1.38541 0.85115 0.76387 0.78422 0.79189 1.20214 1.22474 1.19560 1.20910 0.88162 0.95866 0.87960 1.22676 0.96720 0.82238 0.97419 0.89865 1.66413 1.35460 1.00192 1.13904 1.19316 0.90530 0.88088 1.04885 0.88692 0.85303 0.90343 0.70508 0.81025 0.82839 0.86843 0.93388 0.88498 0.86896 0.93403 0.95691 0.94728 0.97697 0.98340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 11.19 127.77 1.43 1.90 16 2 N -0.48 -7.32 3.20 -549.30 -1.76 -9.07 16 3 C 0.31 3.70 12.49 180.04 2.25 5.95 16 4 N -0.53 -11.24 11.27 -191.65 -2.16 -13.40 16 5 C 0.01 0.31 7.25 39.69 0.29 0.60 16 6 C -0.03 -0.70 10.16 22.38 0.23 -0.47 16 7 C -0.13 -3.95 9.55 22.34 0.21 -3.73 16 8 C 0.10 3.57 6.72 41.96 0.28 3.85 16 9 C 0.57 24.13 7.41 86.83 0.64 24.77 16 10 O -0.57 -28.34 16.27 -3.83 -0.06 -28.40 16 11 N -0.58 -22.68 2.98 -787.44 -2.35 -25.03 16 12 C 0.11 3.14 5.49 86.84 0.48 3.61 16 13 C -0.11 -2.45 6.34 31.96 0.20 -2.25 16 14 C -0.10 -3.10 4.28 -8.92 -0.04 -3.14 16 15 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 16 C 0.14 5.46 6.46 86.69 0.56 6.02 16 17 N -0.62 -33.69 3.38 -696.17 -2.35 -36.04 16 18 C -0.25 -14.35 10.25 84.03 0.86 -13.49 16 19 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 20 C -0.07 -4.27 5.48 84.86 0.47 -3.81 16 21 N -0.95 -62.58 10.24 21.65 0.22 -62.36 16 22 Si 0.98 48.14 29.55 68.60 2.03 50.17 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.20 10.94 4.94 86.86 0.43 11.37 16 27 C 0.11 4.74 3.66 46.25 0.17 4.91 16 28 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 29 N -0.44 -13.23 6.56 -181.83 -1.19 -14.42 16 30 C 0.21 5.31 8.01 134.06 1.07 6.39 16 31 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.13 -0.13 8.14 -2.38 -0.02 -0.15 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.28 -0.31 8.06 -2.91 -0.02 -0.33 16 35 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 36 H 0.15 4.65 7.61 -2.91 -0.02 4.62 16 37 H 0.11 2.93 5.82 -2.39 -0.01 2.91 16 38 H 0.05 1.57 7.24 -2.38 -0.02 1.55 16 39 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.11 1.90 8.07 -2.39 -0.02 1.88 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.03 0.98 6.59 -2.38 -0.02 0.96 16 43 H 0.24 15.72 8.31 -92.71 -0.77 14.95 16 44 H 0.00 0.31 7.33 -2.38 -0.02 0.29 16 45 H 0.00 -0.11 6.80 -2.39 -0.02 -0.12 16 Total: -1.00 -91.26 363.15 2.93 -88.33 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.02 Total: 7.76 kcal Atomic # 6 Polarization: 32.94 SS G_CDS: 9.53 Total: 42.47 kcal Atomic # 7 Polarization: -150.74 SS G_CDS: -9.59 Total: -160.33 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.06 Total: -28.40 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -91.26 2.93 -88.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076237876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.319 kcal (2) G-P(sol) polarization free energy of solvation -91.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds