Wall clock time and date at job start Sat Apr 11 2020 06:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28528 * 124.44301 * 2 1 4 4 C 1.31138 * 109.05674 * 180.02562 * 3 2 1 5 5 C 1.40925 * 105.77570 * 0.02562 * 4 3 2 6 6 C 1.47801 * 127.23322 * 179.97438 * 5 4 3 7 7 O 1.21561 * 120.00283 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99977 * 179.97438 * 6 5 4 9 9 C 1.47021 * 125.65222 * 180.02562 * 8 6 5 10 10 C 1.54327 * 107.27699 * 178.99505 * 9 8 6 11 11 H 1.08995 * 110.71873 * 96.16926 * 10 9 8 12 12 C 1.50700 * 110.87314 * 219.37127 * 10 9 8 13 13 C 1.38240 * 119.99765 * 53.33540 * 12 10 9 14 14 C 1.38235 * 119.99540 * 179.80450 * 13 12 10 15 15 C 1.38234 * 120.00162 * 0.40341 * 14 13 12 16 16 C 1.38236 * 120.00116 * 359.85129 * 15 14 13 17 17 C 1.38226 * 120.00102 * 233.60560 * 12 10 9 18 18 C 1.55164 * 102.93862 * 337.80831 * 10 9 8 19 19 H 1.09005 * 110.99936 * 277.38862 * 18 10 9 20 20 N 1.46494 * 111.00019 * 153.57834 * 18 10 9 21 21 C 1.36945 * 119.99612 * 158.18009 * 20 18 10 22 22 H 1.07999 * 120.00077 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99637 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00227 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99854 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46819 * 59.99973 * 25 23 21 27 27 H 1.48494 * 109.47285 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47086 * 300.00269 * 25 23 21 29 29 C 1.47468 * 125.62862 * 0.02562 * 8 6 5 30 30 N 1.28588 * 124.44525 * 180.31419 * 2 1 3 31 31 H 1.08995 * 109.46732 * 89.97335 * 1 2 3 32 32 H 1.08996 * 109.47057 * 209.97777 * 1 2 3 33 33 H 1.09001 * 109.46748 * 329.97344 * 1 2 3 34 34 H 1.07994 * 127.10719 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.88450 * 59.57487 * 9 8 6 36 36 H 1.09000 * 110.01173 * 298.48839 * 9 8 6 37 37 H 1.08005 * 120.00060 * 359.97438 * 13 12 10 38 38 H 1.07999 * 119.99569 * 180.23275 * 14 13 12 39 39 H 1.08000 * 119.99677 * 179.82826 * 15 14 13 40 40 H 1.07994 * 120.00164 * 179.97438 * 16 15 14 41 41 H 1.08005 * 119.99896 * 359.97438 * 17 12 10 42 42 H 0.96995 * 120.00290 * 338.44900 * 20 18 10 43 43 H 0.97005 * 120.00046 * 179.97438 * 24 23 21 44 44 H 1.08995 * 110.35047 * 85.23360 * 29 8 6 45 45 H 1.09004 * 110.40962 * 322.89386 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1920 1.0600 0.0000 4 6 3.4563 0.7120 -0.0006 5 6 3.4659 -0.6972 -0.0015 6 6 4.6487 -1.5835 -0.0029 7 8 5.7664 -1.1055 -0.0039 8 7 4.4881 -2.9216 -0.0032 9 6 5.5721 -3.9147 -0.0041 10 6 4.9147 -5.3108 0.0218 11 1 4.8371 -5.7191 -0.9858 12 6 5.6818 -6.2490 0.9175 13 6 5.9564 -5.8879 2.2234 14 6 6.6565 -6.7503 3.0462 15 6 7.0892 -7.9701 2.5608 16 6 6.8193 -8.3289 1.2534 17 6 6.1157 -7.4682 0.4317 18 6 3.5071 -5.0211 0.6068 19 1 3.5390 -4.9717 1.6952 20 7 2.5359 -6.0216 0.1576 21 6 1.3868 -6.2298 0.8729 22 1 1.1968 -5.6567 1.7684 23 6 0.4662 -7.1775 0.4470 24 7 0.6980 -7.8762 -0.6440 25 14 -1.1008 -7.4620 1.4231 26 1 -1.8839 -6.2015 1.4805 27 1 -1.9104 -8.5174 0.7631 28 1 -0.7542 -7.8926 2.8014 29 6 3.1956 -3.6316 -0.0027 30 7 2.1923 -1.0604 -0.0058 31 1 -0.3632 0.0005 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5143 34 1 4.3130 1.3695 -0.0003 35 1 6.1966 -3.7827 0.8795 36 1 6.1767 -3.8063 -0.9045 37 1 5.6215 -4.9333 2.6015 38 1 6.8677 -6.4698 4.0675 39 1 7.6386 -8.6426 3.2029 40 1 7.1577 -9.2817 0.8740 41 1 5.9046 -7.7486 -0.5897 42 1 2.7085 -6.5393 -0.6443 43 1 0.0548 -8.5387 -0.9414 44 1 2.8220 -3.7395 -1.0210 45 1 2.4705 -3.1008 0.6141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081197233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:14 Heat of formation + Delta-G solvation = 130.230076 kcal Electronic energy + Delta-G solvation = -29522.513783 eV Core-core repulsion = 25543.541390 eV Total energy + Delta-G solvation = -3978.972393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.65650 -40.04301 -38.82071 -37.14037 -34.13658 -33.85585 -32.99446 -32.23286 -30.91770 -30.63530 -28.80648 -27.82736 -27.39628 -24.81119 -23.68704 -22.82925 -22.33349 -22.07577 -21.03862 -19.81891 -19.42719 -17.46414 -17.30048 -17.03644 -16.87390 -16.49452 -15.73408 -15.43777 -14.82895 -14.78641 -14.74739 -14.40708 -13.81333 -13.44872 -13.22569 -13.19162 -13.12103 -13.05126 -12.85070 -12.77494 -12.47402 -12.12478 -11.90702 -11.66426 -11.53053 -11.03563 -10.91692 -10.87203 -10.77094 -10.56577 -10.48765 -10.31231 -10.19442 -10.01754 -9.78592 -9.47802 -9.06427 -8.63799 -8.44544 -8.29100 -7.09025 -5.86135 -3.16264 1.35421 1.63115 1.69432 1.91876 2.11677 3.09102 3.36008 3.37166 3.42690 3.43179 3.89849 4.04135 4.47491 4.65422 4.85051 4.87951 4.93382 4.98906 5.02406 5.14660 5.19604 5.24897 5.26649 5.35747 5.50852 5.56949 5.65300 5.69020 5.76638 5.80845 5.86818 5.89280 6.00144 6.12853 6.22704 6.31422 6.35298 6.38623 6.47383 6.62643 6.72711 6.75812 6.80255 6.96969 7.28287 7.61097 7.65901 8.04816 8.26668 8.31196 9.43140 9.95621 10.31170 11.35779 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007308 B = 0.004665 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3830.626486 B = 6000.736614 C = 9169.258629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.146 5.146 3 N -0.296 5.296 4 C 0.031 3.969 5 C -0.042 4.042 6 C 0.618 3.382 7 O -0.542 6.542 8 N -0.598 5.598 9 C 0.122 3.878 10 C -0.076 4.076 11 H 0.094 0.906 12 C -0.050 4.050 13 C -0.113 4.113 14 C -0.121 4.121 15 C -0.130 4.130 16 C -0.120 4.120 17 C -0.106 4.106 18 C 0.184 3.816 19 H 0.068 0.932 20 N -0.706 5.706 21 C -0.244 4.244 22 H 0.071 0.929 23 C -0.006 4.006 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.075 3.925 30 N -0.233 5.233 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.206 0.794 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.071 0.929 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.735 10.023 2.157 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.048 5.048 3 N -0.136 5.136 4 C -0.152 4.152 5 C -0.205 4.205 6 C 0.404 3.596 7 O -0.418 6.418 8 N -0.330 5.330 9 C -0.001 4.001 10 C -0.096 4.096 11 H 0.112 0.888 12 C -0.051 4.051 13 C -0.131 4.131 14 C -0.139 4.139 15 C -0.148 4.148 16 C -0.138 4.138 17 C -0.124 4.124 18 C 0.071 3.929 19 H 0.086 0.914 20 N -0.345 5.345 21 C -0.375 4.375 22 H 0.089 0.911 23 C -0.203 4.203 24 N -0.576 5.576 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.051 4.051 30 N -0.081 5.081 31 H 0.112 0.888 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.223 0.777 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.781 10.297 2.257 12.023 hybrid contribution -0.218 -0.414 0.178 0.501 sum 5.562 9.883 2.435 11.599 Atomic orbital electron populations 1.22275 0.69644 1.06316 1.05437 1.48149 1.09329 0.99338 1.48032 1.73973 1.03801 1.15816 1.19986 1.24777 0.94239 0.93589 1.02639 1.23003 0.91377 0.94521 1.11604 1.16260 0.85901 0.80240 0.77196 1.90783 1.23900 1.74919 1.52224 1.48316 1.10165 1.03992 1.70540 1.22003 0.89461 0.86209 1.02378 1.21570 0.96172 0.92238 0.99618 0.88789 1.19519 0.96506 0.94889 0.94148 1.20963 0.98810 0.99807 0.93536 1.21035 0.98949 0.94534 0.99340 1.21046 1.01101 0.96822 0.95840 1.21069 0.99234 0.99272 0.94181 1.21041 0.97626 0.93647 1.00079 1.21401 0.86651 0.87801 0.97046 0.91396 1.42219 1.19753 1.41606 1.30933 1.19153 0.95709 1.16961 1.05674 0.91146 1.24718 0.98916 0.98872 0.97753 1.69641 1.36843 1.27025 1.24122 0.86299 0.83284 0.77436 0.79316 1.21250 1.21661 1.21198 1.23722 0.83851 0.94957 1.02564 1.74714 1.02994 1.14770 1.15649 0.88825 0.87208 0.87757 0.77692 0.90866 0.91210 0.86338 0.86539 0.86677 0.86443 0.86066 0.77828 0.93335 0.91080 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.55 59.85 0.69 1.51 16 2 N -0.15 -1.88 4.35 -16.64 -0.07 -1.96 16 3 N -0.30 -3.91 12.01 30.90 0.37 -3.54 16 4 C 0.03 0.42 12.04 -16.83 -0.20 0.22 16 5 C -0.04 -0.66 7.02 -82.68 -0.58 -1.24 16 6 C 0.62 10.38 7.86 -12.35 -0.10 10.29 16 7 O -0.54 -9.92 17.28 5.31 0.09 -9.83 16 8 N -0.60 -9.75 3.33 -171.62 -0.57 -10.32 16 9 C 0.12 1.83 6.34 -3.06 -0.02 1.81 16 10 C -0.08 -1.20 2.80 -89.93 -0.25 -1.45 16 11 H 0.09 1.49 7.80 -51.93 -0.41 1.08 16 12 C -0.05 -0.78 4.95 -104.63 -0.52 -1.30 16 13 C -0.11 -1.67 8.12 -39.58 -0.32 -1.99 16 14 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 15 C -0.13 -1.70 10.05 -39.58 -0.40 -2.09 16 16 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 17 C -0.11 -1.59 9.68 -39.59 -0.38 -1.97 16 18 C 0.18 3.42 3.09 -65.79 -0.20 3.22 16 19 H 0.07 1.32 7.19 -51.93 -0.37 0.95 16 20 N -0.71 -16.28 5.26 -51.35 -0.27 -16.55 16 21 C -0.24 -6.33 9.97 -15.06 -0.15 -6.48 16 22 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 24 N -0.93 -26.61 13.06 55.49 0.72 -25.89 16 25 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 C 0.07 1.31 5.87 -2.51 -0.01 1.30 16 30 N -0.23 -3.56 9.31 33.42 0.31 -3.25 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.21 2.16 8.06 -52.49 -0.42 1.73 16 35 H 0.07 1.07 6.67 -51.93 -0.35 0.72 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.12 1.67 7.30 -52.48 -0.38 1.29 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.12 1.71 7.98 -52.48 -0.42 1.29 16 42 H 0.39 9.53 7.73 -40.82 -0.32 9.22 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 45 H 0.09 1.60 6.24 -51.93 -0.32 1.27 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -32.22 380.38 -7.96 -40.18 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.92 Total: 11.53 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.34 Total: -2.50 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.49 Total: -61.51 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.22 -7.96 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081197233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.412 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds