Wall clock time and date at job start Sat Apr 11 2020 06:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28528 * 124.44301 * 2 1 4 4 C 1.31138 * 109.05674 * 180.02562 * 3 2 1 5 5 C 1.40925 * 105.77570 * 0.02562 * 4 3 2 6 6 C 1.47801 * 127.23322 * 179.97438 * 5 4 3 7 7 O 1.21561 * 120.00283 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99977 * 179.97438 * 6 5 4 9 9 C 1.47021 * 125.65222 * 180.02562 * 8 6 5 10 10 C 1.54327 * 107.27699 * 178.99505 * 9 8 6 11 11 H 1.08995 * 110.71873 * 96.16926 * 10 9 8 12 12 C 1.50700 * 110.87314 * 219.37127 * 10 9 8 13 13 C 1.38240 * 119.99765 * 53.33540 * 12 10 9 14 14 C 1.38235 * 119.99540 * 179.80450 * 13 12 10 15 15 C 1.38234 * 120.00162 * 0.40341 * 14 13 12 16 16 C 1.38236 * 120.00116 * 359.85129 * 15 14 13 17 17 C 1.38226 * 120.00102 * 233.60560 * 12 10 9 18 18 C 1.55164 * 102.93862 * 337.80831 * 10 9 8 19 19 H 1.09005 * 110.99936 * 277.38862 * 18 10 9 20 20 N 1.46494 * 111.00019 * 153.57834 * 18 10 9 21 21 C 1.36945 * 119.99612 * 158.18009 * 20 18 10 22 22 H 1.07999 * 120.00077 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99637 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00227 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99854 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46819 * 59.99973 * 25 23 21 27 27 H 1.48494 * 109.47285 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47086 * 300.00269 * 25 23 21 29 29 C 1.47468 * 125.62862 * 0.02562 * 8 6 5 30 30 N 1.28588 * 124.44525 * 180.31419 * 2 1 3 31 31 H 1.08995 * 109.46732 * 89.97335 * 1 2 3 32 32 H 1.08996 * 109.47057 * 209.97777 * 1 2 3 33 33 H 1.09001 * 109.46748 * 329.97344 * 1 2 3 34 34 H 1.07994 * 127.10719 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.88450 * 59.57487 * 9 8 6 36 36 H 1.09000 * 110.01173 * 298.48839 * 9 8 6 37 37 H 1.08005 * 120.00060 * 359.97438 * 13 12 10 38 38 H 1.07999 * 119.99569 * 180.23275 * 14 13 12 39 39 H 1.08000 * 119.99677 * 179.82826 * 15 14 13 40 40 H 1.07994 * 120.00164 * 179.97438 * 16 15 14 41 41 H 1.08005 * 119.99896 * 359.97438 * 17 12 10 42 42 H 0.96995 * 120.00290 * 338.44900 * 20 18 10 43 43 H 0.97005 * 120.00046 * 179.97438 * 24 23 21 44 44 H 1.08995 * 110.35047 * 85.23360 * 29 8 6 45 45 H 1.09004 * 110.40962 * 322.89386 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1920 1.0600 0.0000 4 6 3.4563 0.7120 -0.0006 5 6 3.4659 -0.6972 -0.0015 6 6 4.6487 -1.5835 -0.0029 7 8 5.7664 -1.1055 -0.0039 8 7 4.4881 -2.9216 -0.0032 9 6 5.5721 -3.9147 -0.0041 10 6 4.9147 -5.3108 0.0218 11 1 4.8371 -5.7191 -0.9858 12 6 5.6818 -6.2490 0.9175 13 6 5.9564 -5.8879 2.2234 14 6 6.6565 -6.7503 3.0462 15 6 7.0892 -7.9701 2.5608 16 6 6.8193 -8.3289 1.2534 17 6 6.1157 -7.4682 0.4317 18 6 3.5071 -5.0211 0.6068 19 1 3.5390 -4.9717 1.6952 20 7 2.5359 -6.0216 0.1576 21 6 1.3868 -6.2298 0.8729 22 1 1.1968 -5.6567 1.7684 23 6 0.4662 -7.1775 0.4470 24 7 0.6980 -7.8762 -0.6440 25 14 -1.1008 -7.4620 1.4231 26 1 -1.8839 -6.2015 1.4805 27 1 -1.9104 -8.5174 0.7631 28 1 -0.7542 -7.8926 2.8014 29 6 3.1956 -3.6316 -0.0027 30 7 2.1923 -1.0604 -0.0058 31 1 -0.3632 0.0005 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5143 34 1 4.3130 1.3695 -0.0003 35 1 6.1966 -3.7827 0.8795 36 1 6.1767 -3.8063 -0.9045 37 1 5.6215 -4.9333 2.6015 38 1 6.8677 -6.4698 4.0675 39 1 7.6386 -8.6426 3.2029 40 1 7.1577 -9.2817 0.8740 41 1 5.9046 -7.7486 -0.5897 42 1 2.7085 -6.5393 -0.6443 43 1 0.0548 -8.5387 -0.9414 44 1 2.8220 -3.7395 -1.0210 45 1 2.4705 -3.1008 0.6141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081197233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:13 Heat of formation + Delta-G solvation = 110.173105 kcal Electronic energy + Delta-G solvation = -29523.383519 eV Core-core repulsion = 25543.541390 eV Total energy + Delta-G solvation = -3979.842129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.71053 -41.35570 -40.01846 -38.48903 -35.89635 -34.84294 -34.20285 -33.44998 -32.65760 -31.71624 -30.00047 -29.11831 -28.65092 -26.18207 -25.37480 -23.96858 -23.47965 -23.10881 -22.40045 -21.14166 -20.71532 -19.23094 -18.40276 -18.16971 -18.06779 -17.73491 -16.99306 -16.83648 -16.27819 -15.99209 -15.80812 -15.74154 -15.35101 -15.00228 -14.60395 -14.32983 -14.26805 -14.16897 -13.90378 -13.81517 -13.64403 -13.39099 -13.13945 -13.08822 -12.92294 -12.72368 -12.56683 -12.23735 -12.05884 -11.92818 -11.84719 -11.73859 -11.62556 -11.50905 -11.35492 -10.96103 -10.51072 -9.80611 -9.69127 -9.52278 -8.99300 -7.91892 -5.21133 0.18784 0.52217 0.59710 0.86567 1.22323 1.49551 1.51443 1.57279 1.84493 2.09625 2.57223 2.82002 2.92995 3.37186 3.42515 3.67552 3.76124 3.87225 3.98480 4.10323 4.15842 4.23230 4.27272 4.29065 4.30797 4.33810 4.38021 4.48687 4.54457 4.65257 4.67901 4.69813 4.81866 4.87411 4.94930 5.00854 5.13836 5.21945 5.24219 5.29748 5.54203 5.54663 5.65845 5.69565 5.80776 6.20900 6.27268 6.30737 6.84348 7.08878 7.36387 8.05554 8.31718 9.30569 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007308 B = 0.004665 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3830.626486 B = 6000.736614 C = 9169.258629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.138 5.138 3 N -0.296 5.296 4 C 0.034 3.966 5 C -0.067 4.067 6 C 0.619 3.381 7 O -0.559 6.559 8 N -0.598 5.598 9 C 0.126 3.874 10 C -0.062 4.062 11 H 0.090 0.910 12 C -0.068 4.068 13 C -0.126 4.126 14 C -0.125 4.125 15 C -0.130 4.130 16 C -0.126 4.126 17 C -0.125 4.125 18 C 0.183 3.817 19 H 0.061 0.939 20 N -0.714 5.714 21 C -0.239 4.239 22 H 0.074 0.926 23 C -0.064 4.064 24 N -0.964 5.964 25 Si 0.964 3.036 26 H -0.275 1.275 27 H -0.298 1.298 28 H -0.282 1.282 29 C 0.095 3.905 30 N -0.253 5.253 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.131 0.869 34 H 0.229 0.771 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.121 0.879 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.057 0.943 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.959 10.799 3.390 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.042 5.042 3 N -0.136 5.136 4 C -0.149 4.149 5 C -0.228 4.228 6 C 0.406 3.594 7 O -0.437 6.437 8 N -0.330 5.330 9 C 0.003 3.997 10 C -0.081 4.081 11 H 0.108 0.892 12 C -0.069 4.069 13 C -0.144 4.144 14 C -0.143 4.143 15 C -0.148 4.148 16 C -0.144 4.144 17 C -0.143 4.143 18 C 0.072 3.928 19 H 0.079 0.921 20 N -0.352 5.352 21 C -0.370 4.370 22 H 0.092 0.908 23 C -0.256 4.256 24 N -0.614 5.614 25 Si 0.794 3.206 26 H -0.201 1.201 27 H -0.224 1.224 28 H -0.209 1.209 29 C -0.031 4.031 30 N -0.103 5.103 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.149 0.851 34 H 0.246 0.754 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.138 0.862 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.139 0.861 42 H 0.210 0.790 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.030 11.117 3.514 13.126 hybrid contribution -0.264 -0.596 -0.171 0.674 sum 5.766 10.522 3.343 12.455 Atomic orbital electron populations 1.22745 0.67203 1.07861 1.07070 1.48660 1.10625 0.98685 1.46275 1.73990 1.03774 1.15786 1.20077 1.25172 0.95036 0.92979 1.01670 1.22907 0.91142 0.95276 1.13524 1.16422 0.86192 0.80209 0.76565 1.90763 1.24686 1.75111 1.53130 1.48291 1.09817 1.04242 1.70619 1.22039 0.89159 0.85287 1.03168 1.21391 0.94428 0.93001 0.99328 0.89190 1.19546 0.97479 0.95228 0.94621 1.21100 0.99449 1.00381 0.93508 1.21377 0.98133 0.94436 1.00313 1.21438 1.00471 0.97006 0.95890 1.21393 0.98641 0.99861 0.94486 1.21221 0.98476 0.93971 1.00632 1.21453 0.87398 0.87305 0.96684 0.92058 1.42278 1.19987 1.42537 1.30443 1.19476 0.96232 1.15932 1.05377 0.90789 1.25412 1.01888 0.99411 0.98931 1.69789 1.37706 1.28015 1.25874 0.85358 0.80067 0.77301 0.77910 1.20131 1.22435 1.20858 1.23277 0.84298 0.94210 1.01344 1.74650 1.03293 1.16031 1.16310 0.87127 0.86886 0.85060 0.75434 0.90204 0.90251 0.86221 0.84157 0.83790 0.84342 0.86064 0.78978 0.94055 0.92504 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 11.55 127.77 1.48 2.73 16 2 N -0.14 -3.38 4.35 -206.55 -0.90 -4.27 16 3 N -0.30 -7.33 12.01 -56.16 -0.67 -8.01 16 4 C 0.03 0.87 12.04 85.46 1.03 1.90 16 5 C -0.07 -2.05 7.02 42.24 0.30 -1.76 16 6 C 0.62 20.63 7.86 86.77 0.68 21.31 16 7 O -0.56 -20.18 17.28 -3.91 -0.07 -20.24 16 8 N -0.60 -19.48 3.33 -815.17 -2.71 -22.19 16 9 C 0.13 3.73 6.34 86.73 0.55 4.28 16 10 C -0.06 -1.97 2.80 -10.35 -0.03 -2.00 16 11 H 0.09 2.93 7.80 -2.39 -0.02 2.91 16 12 C -0.07 -2.11 4.95 -19.87 -0.10 -2.21 16 13 C -0.13 -3.64 8.12 22.27 0.18 -3.45 16 14 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 15 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 16 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 17 C -0.12 -3.72 9.68 22.27 0.22 -3.51 16 18 C 0.18 6.89 3.09 46.38 0.14 7.03 16 19 H 0.06 2.41 7.19 -2.38 -0.02 2.39 16 20 N -0.71 -33.54 5.26 -316.39 -1.67 -35.20 16 21 C -0.24 -12.45 9.97 84.03 0.84 -11.61 16 22 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 23 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 24 N -0.96 -56.25 13.06 21.65 0.28 -55.96 16 25 Si 0.96 44.11 29.55 68.60 2.03 46.14 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 29 C 0.09 3.36 5.87 86.84 0.51 3.87 16 30 N -0.25 -7.60 9.31 -48.17 -0.45 -8.05 16 31 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.23 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.08 2.29 6.67 -2.39 -0.02 2.27 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.12 3.31 7.30 -2.91 -0.02 3.29 16 38 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 40 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.12 3.48 7.98 -2.91 -0.02 3.46 16 42 H 0.38 19.12 7.73 -92.71 -0.72 18.41 16 43 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.08 3.03 6.24 -2.39 -0.01 3.02 16 Total: -1.00 -68.73 380.38 3.08 -65.64 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.31 Total: 37.37 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.93 Total: 4.79 kcal Atomic # 7 Polarization: -127.57 SS G_CDS: -6.11 Total: -133.69 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.07 Total: -20.24 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.73 3.08 -65.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081197233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.814 kcal (2) G-P(sol) polarization free energy of solvation -68.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds