Wall clock time and date at job start Sat Apr 11 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35990 * 126.35279 * 2 1 4 4 N 1.30288 * 110.05450 * 179.97438 * 3 2 1 5 5 C 1.34655 * 109.66663 * 359.97438 * 4 3 2 6 6 C 1.37941 * 126.35941 * 179.97438 * 2 1 3 7 7 N 1.32112 * 133.80939 * 359.97438 * 6 2 1 8 8 C 1.31730 * 121.94739 * 180.02562 * 7 6 2 9 9 C 1.38338 * 121.54454 * 359.67492 * 8 7 6 10 10 C 1.39637 * 119.37843 * 0.62633 * 9 8 7 11 11 C 1.47766 * 121.07355 * 179.68360 * 10 9 8 12 12 O 1.21559 * 119.99729 * 187.51886 * 11 10 9 13 13 N 1.34777 * 119.99991 * 7.24567 * 11 10 9 14 14 C 1.47286 * 136.54132 * 357.08788 * 13 11 10 15 15 C 1.54089 * 87.60396 * 151.34808 * 14 13 11 16 16 H 1.08999 * 115.04173 * 141.62429 * 15 14 13 17 17 C 1.53060 * 111.39250 * 273.97280 * 15 14 13 18 18 C 1.52006 * 109.69085 * 142.51793 * 17 15 14 19 19 N 1.46549 * 108.10426 * 301.56345 * 18 17 15 20 20 C 1.36929 * 119.73492 * 236.29309 * 19 18 17 21 21 H 1.08003 * 120.00302 * 34.67330 * 20 19 18 22 22 C 1.38820 * 120.00004 * 214.66412 * 20 19 18 23 23 N 1.31621 * 119.99703 * 355.53615 * 22 20 19 24 24 Si 1.86793 * 120.00025 * 175.53475 * 22 20 19 25 25 H 1.48503 * 109.47421 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47191 * 120.00457 * 24 22 20 27 27 H 1.48503 * 109.47249 * 240.00278 * 24 22 20 28 28 C 1.45701 * 120.52151 * 56.31899 * 19 18 17 29 29 C 1.46464 * 136.54352 * 176.71285 * 13 11 10 30 30 H 1.08998 * 111.44039 * 96.39996 * 29 13 11 31 31 H 1.08999 * 109.47016 * 90.02681 * 1 2 3 32 32 H 1.09002 * 109.46676 * 210.02409 * 1 2 3 33 33 H 1.08995 * 109.47213 * 330.01966 * 1 2 3 34 34 H 1.08003 * 124.97367 * 359.97438 * 3 2 1 35 35 H 1.07995 * 119.22424 * 180.02562 * 8 7 6 36 36 H 1.08007 * 120.31065 * 180.33584 * 9 8 7 37 37 H 1.09001 * 113.52868 * 266.02959 * 14 13 11 38 38 H 1.09002 * 113.53151 * 36.67044 * 14 13 11 39 39 H 1.09002 * 109.51437 * 262.32301 * 17 15 14 40 40 H 1.09002 * 109.51426 * 22.48496 * 17 15 14 41 41 H 1.08993 * 109.88516 * 181.86226 * 18 17 15 42 42 H 1.09000 * 109.71580 * 61.16585 * 18 17 15 43 43 H 0.96998 * 119.99996 * 179.97438 * 23 22 20 44 44 H 1.09003 * 108.78617 * 199.09338 * 28 19 18 45 45 H 1.08997 * 108.69833 * 80.81745 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0952 0.0000 4 7 3.5216 0.7296 0.0005 5 6 3.6007 -0.6146 0.0015 6 6 2.2828 -1.1109 0.0005 7 7 2.0572 -2.4126 0.0015 8 6 3.0395 -3.2902 0.0023 9 6 4.3647 -2.8933 -0.0046 10 6 4.6718 -1.5311 0.0007 11 6 6.0741 -1.0654 0.0006 12 8 6.3222 0.1161 0.1431 13 7 7.0784 -1.9513 -0.1518 14 6 7.2036 -3.4125 -0.2877 15 6 8.4851 -3.1617 -1.1057 16 1 9.2940 -3.8694 -0.9245 17 6 8.1668 -2.9285 -2.5845 18 6 9.0958 -1.8648 -3.1469 19 7 8.9134 -0.6402 -2.3628 20 6 8.5687 0.5252 -2.9937 21 1 7.9174 0.5008 -3.8549 22 6 9.0562 1.7380 -2.5263 23 7 9.7775 1.7772 -1.4259 24 14 8.6887 3.3142 -3.4588 25 1 7.8639 3.0017 -4.6536 26 1 7.9462 4.2498 -2.5763 27 1 9.9631 3.9443 -3.8876 28 6 9.0965 -0.6529 -0.9174 29 6 8.5377 -1.8953 -0.2637 30 1 9.0182 -2.0744 0.6982 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3633 0.8901 0.5135 34 1 1.9253 2.1184 -0.0004 35 1 2.8048 -4.3444 0.0027 36 1 5.1544 -3.6300 -0.0093 37 1 7.3841 -3.9236 0.6580 38 1 6.3994 -3.8662 -0.8670 39 1 8.3083 -3.8566 -3.1382 40 1 7.1335 -2.5966 -2.6866 41 1 8.8501 -1.6725 -4.1912 42 1 10.1297 -2.2009 -3.0684 43 1 10.1184 2.6245 -1.0995 44 1 8.6009 0.2203 -0.4931 45 1 10.1627 -0.5910 -0.6997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084654564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:26 Heat of formation + Delta-G solvation = 152.934874 kcal Electronic energy + Delta-G solvation = -30662.680918 eV Core-core repulsion = 26684.693079 eV Total energy + Delta-G solvation = -3977.987840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.40975 -40.55534 -38.47741 -37.32783 -35.15416 -34.47751 -32.37455 -31.88940 -30.07899 -29.77044 -28.77145 -27.32221 -26.93430 -24.65355 -23.86526 -23.14184 -22.72939 -21.49146 -20.95837 -19.57049 -18.17282 -17.67647 -17.43413 -16.97585 -16.22691 -15.97765 -15.66859 -15.47441 -14.88874 -14.55125 -14.20594 -14.00623 -13.85163 -13.67254 -13.43812 -13.24752 -13.04890 -12.89406 -12.72890 -12.48361 -12.45120 -12.15775 -11.80306 -11.37443 -10.94380 -10.75851 -10.72089 -10.67271 -10.53554 -10.39589 -10.11575 -9.86052 -9.71718 -9.64889 -9.19919 -8.78764 -8.75023 -8.51097 -8.21390 -8.00537 -6.37856 -5.59112 -3.10012 0.48574 1.13389 2.21595 2.80034 3.24845 3.33712 3.51145 3.57858 3.59887 3.99824 4.07900 4.26073 4.41332 4.60412 4.64796 4.69623 4.81564 4.88631 4.89643 5.09119 5.16648 5.18508 5.32899 5.50073 5.55422 5.59118 5.63017 5.73143 5.81761 5.85021 5.95119 5.98619 6.20590 6.29879 6.43280 6.46485 6.52596 6.61853 6.68154 6.83925 6.87550 7.08350 7.61120 7.73819 7.81928 7.94437 8.04905 8.37457 8.72652 8.85919 9.46524 10.06388 10.58356 11.48094 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.004588 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.931603 B = 6102.027354 C = 7906.887063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.489 5.489 3 C 0.267 3.733 4 N -0.453 5.453 5 C 0.052 3.948 6 C 0.230 3.770 7 N -0.474 5.474 8 C 0.129 3.871 9 C -0.171 4.171 10 C -0.013 4.013 11 C 0.576 3.424 12 O -0.476 6.476 13 N -0.628 5.628 14 C 0.084 3.916 15 C -0.112 4.112 16 H 0.093 0.907 17 C -0.115 4.115 18 C 0.148 3.852 19 N -0.586 5.586 20 C -0.254 4.254 21 H 0.058 0.942 22 C 0.018 3.982 23 N -0.900 5.900 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.166 3.834 29 C 0.120 3.880 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.223 0.777 35 H 0.169 0.831 36 H 0.157 0.843 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.252 0.748 44 H 0.107 0.893 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.631 -12.833 4.684 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.182 5.182 3 C -0.019 4.019 4 N -0.170 5.170 5 C -0.072 4.072 6 C -0.006 4.006 7 N -0.188 5.188 8 C -0.037 4.037 9 C -0.194 4.194 10 C -0.026 4.026 11 C 0.363 3.637 12 O -0.348 6.348 13 N -0.365 5.365 14 C -0.039 4.039 15 C -0.131 4.131 16 H 0.111 0.889 17 C -0.154 4.154 18 C 0.021 3.979 19 N -0.309 5.309 20 C -0.384 4.384 21 H 0.076 0.924 22 C -0.181 4.181 23 N -0.544 5.544 24 Si 0.729 3.271 25 H -0.205 1.205 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.040 3.960 29 C 0.016 3.984 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.239 0.761 35 H 0.186 0.814 36 H 0.175 0.825 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.125 0.875 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -15.921 -11.484 4.890 20.230 hybrid contribution -0.299 0.575 -0.323 0.724 sum -16.220 -10.909 4.567 20.074 Atomic orbital electron populations 1.21977 0.75491 1.04680 1.03602 1.45116 1.07551 1.04599 1.60957 1.25756 0.84817 0.93191 0.98088 1.70424 1.17211 1.10674 1.18649 1.19235 0.91874 0.91353 1.04693 1.18890 0.88983 0.88002 1.04693 1.66123 1.38130 0.99451 1.15081 1.22446 0.87259 0.98198 0.95844 1.22728 0.99054 0.95351 1.02261 1.19867 0.92974 0.91907 0.97842 1.17244 0.82612 0.85200 0.78627 1.90934 1.82997 1.15025 1.45816 1.49297 1.07818 1.06893 1.72534 1.23562 0.98007 0.82981 0.99344 1.22707 0.96663 0.97662 0.96044 0.88902 1.21633 1.01489 0.99309 0.92970 1.20545 0.95035 0.87302 0.94976 1.43436 1.81077 1.05235 1.01123 1.19048 1.23241 0.84358 1.11772 0.92427 1.25226 0.97137 0.98349 0.97356 1.69963 1.38301 1.24684 1.21441 0.86256 0.77184 0.84069 0.79543 1.20468 1.21579 1.21674 1.20310 0.97653 0.94114 0.83932 1.22662 0.79348 0.98692 0.97692 0.90985 0.90696 0.89436 0.89279 0.76076 0.81415 0.82545 0.90092 0.90412 0.92750 0.92197 0.92642 0.96340 0.93803 0.87533 0.95303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 11.20 59.85 0.67 1.25 16 2 N -0.49 -5.99 3.20 -124.98 -0.40 -6.39 16 3 C 0.27 3.54 12.50 -89.68 -1.12 2.42 16 4 N -0.45 -8.75 10.66 -11.88 -0.13 -8.88 16 5 C 0.05 0.98 6.85 -84.62 -0.58 0.40 16 6 C 0.23 3.57 8.02 -155.65 -1.25 2.32 16 7 N -0.47 -6.63 10.35 -12.30 -0.13 -6.75 16 8 C 0.13 1.51 11.14 -17.56 -0.20 1.31 16 9 C -0.17 -2.29 9.29 -39.02 -0.36 -2.65 16 10 C -0.01 -0.24 5.93 -104.45 -0.62 -0.86 16 11 C 0.58 12.64 7.94 -12.37 -0.10 12.54 16 12 O -0.48 -12.99 15.53 5.31 0.08 -12.91 16 13 N -0.63 -11.86 3.33 -189.02 -0.63 -12.49 16 14 C 0.08 1.10 6.01 -11.54 -0.07 1.03 16 15 C -0.11 -1.69 4.58 -90.45 -0.41 -2.10 16 16 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 17 C -0.11 -1.93 5.61 -27.21 -0.15 -2.08 16 18 C 0.15 3.13 6.44 -4.52 -0.03 3.10 16 19 N -0.59 -15.40 3.02 -175.58 -0.53 -15.93 16 20 C -0.25 -7.53 9.42 -15.06 -0.14 -7.67 16 21 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 22 C 0.02 0.56 5.29 -17.43 -0.09 0.46 16 23 N -0.90 -27.92 10.65 55.49 0.59 -27.32 16 24 Si 0.90 23.72 29.56 -169.99 -5.02 18.70 16 25 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 C 0.17 4.24 4.57 -5.43 -0.02 4.21 16 29 C 0.12 2.34 4.02 -77.82 -0.31 2.03 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.22 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.16 1.67 4.00 -52.48 -0.21 1.46 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.86 5.99 -51.93 -0.31 0.55 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.13 7.68 -51.93 -0.40 0.73 16 41 H 0.06 1.17 7.90 -51.93 -0.41 0.76 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.11 3.25 5.13 -51.93 -0.27 2.98 16 45 H 0.03 0.79 7.95 -51.93 -0.41 0.38 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -40.88 362.46 -11.28 -52.15 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.78 Total: -1.35 kcal Atomic # 6 Polarization: 20.50 SS G_CDS: -4.79 Total: 15.71 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -1.22 Total: -77.76 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -5.02 Total: 18.70 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -40.88 -11.28 -52.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084654564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.086 kcal (2) G-P(sol) polarization free energy of solvation -40.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds