Wall clock time and date at job start Sat Apr 11 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99469 * 2 1 4 4 C 1.53002 * 109.47244 * 275.91162 * 3 2 1 5 5 H 1.08997 * 112.96335 * 69.00381 * 4 3 2 6 6 C 1.53949 * 113.76916 * 297.32664 * 4 3 2 7 7 C 1.53942 * 86.29147 * 222.09430 * 6 4 3 8 8 N 1.47577 * 113.76831 * 200.83248 * 4 3 2 9 9 C 1.36938 * 134.49460 * 318.93596 * 8 4 3 10 10 H 1.07993 * 119.99620 * 5.20834 * 9 8 4 11 11 C 1.38811 * 120.00034 * 185.19829 * 9 8 4 12 12 N 1.31614 * 120.00037 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00044 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46804 * 60.00176 * 13 11 9 15 15 H 1.48500 * 109.47493 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47014 * 300.00509 * 13 11 9 17 17 C 1.34776 * 120.00071 * 180.02562 * 2 1 3 18 18 O 1.21609 * 119.99482 * 174.45655 * 17 2 1 19 19 C 1.47409 * 120.00240 * 354.73685 * 17 2 1 20 20 C 1.41332 * 126.40761 * 351.43705 * 19 17 2 21 21 N 1.30477 * 108.06869 * 180.02562 * 20 19 17 22 22 N 1.39938 * 108.91175 * 0.02562 * 21 20 19 23 23 C 1.40169 * 125.77040 * 179.97438 * 22 21 20 24 24 C 1.39261 * 120.48499 * 0.03375 * 23 22 21 25 25 C 1.38510 * 118.36633 * 179.97438 * 24 23 22 26 26 C 1.38278 * 119.22843 * 359.97438 * 25 24 23 27 27 N 1.31860 * 120.90798 * 0.02562 * 26 25 24 28 28 C 1.31815 * 121.79768 * 359.65695 * 27 26 25 29 29 C 1.34537 * 108.45754 * 359.73076 * 22 21 20 30 30 H 1.09003 * 109.46937 * 265.85448 * 1 2 3 31 31 H 1.09001 * 109.47445 * 25.85844 * 1 2 3 32 32 H 1.09007 * 109.47288 * 145.86221 * 1 2 3 33 33 H 1.08996 * 109.47486 * 35.91587 * 3 2 1 34 34 H 1.09001 * 109.46490 * 155.91375 * 3 2 1 35 35 H 1.09000 * 113.74057 * 336.43927 * 6 4 3 36 36 H 1.08999 * 113.74361 * 107.63956 * 6 4 3 37 37 H 1.08998 * 113.77583 * 137.90893 * 7 6 4 38 38 H 1.09002 * 113.76676 * 269.19809 * 7 6 4 39 39 H 0.97006 * 119.99983 * 179.97438 * 12 11 9 40 40 H 1.08003 * 125.96691 * 0.03206 * 20 19 17 41 41 H 1.07999 * 120.81905 * 0.02562 * 24 23 22 42 42 H 1.08001 * 120.39158 * 179.97438 * 25 24 23 43 43 H 1.07995 * 119.54287 * 180.02562 * 26 25 24 44 44 H 1.08002 * 119.66547 * 180.31563 * 28 27 26 45 45 H 1.07994 * 126.30988 * 180.26725 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3237 1.7848 -1.4348 5 1 1.3715 2.1067 -1.8563 6 6 3.1291 0.8546 -2.3601 7 6 3.7829 2.1345 -2.9119 8 7 3.4191 2.7556 -1.6235 9 6 3.9034 3.8095 -0.8956 10 1 3.5022 4.0180 0.0851 11 6 4.9102 4.6096 -1.4182 12 7 5.3989 4.3556 -2.6136 13 14 5.5714 6.0469 -0.4250 14 1 6.1382 5.5461 0.8531 15 1 6.6326 6.7380 -1.2004 16 1 4.4687 6.9992 -0.1381 17 6 2.1389 -1.1672 -0.0005 18 8 3.3507 -1.1695 -0.1023 19 6 1.4066 -2.4412 0.1160 20 6 0.0313 -2.5950 0.4028 21 7 -0.2379 -3.8715 0.4217 22 7 0.9346 -4.5863 0.1525 23 6 1.0467 -5.9820 0.0877 24 6 -0.0671 -6.7908 0.2989 25 6 0.0935 -8.1646 0.2240 26 6 1.3440 -8.6839 -0.0563 27 7 2.3788 -7.8903 -0.2513 28 6 2.2681 -6.5780 -0.1951 29 6 1.9349 -3.7073 -0.0389 30 1 -0.3633 -0.0743 1.0250 31 1 -0.3634 0.9248 -0.4482 32 1 -0.3634 -0.8506 -0.5767 33 1 1.6583 1.9996 0.6028 34 1 3.1916 1.1143 0.4194 35 1 3.8222 0.2013 -1.8301 36 1 2.5171 0.3232 -3.0888 37 1 4.8578 2.0461 -3.0691 38 1 3.2612 2.5596 -3.7694 39 1 6.1022 4.9150 -2.9790 40 1 -0.6739 -1.7954 0.5760 41 1 -1.0325 -6.3576 0.5150 42 1 -0.7482 -8.8225 0.3827 43 1 1.4749 -9.7542 -0.1163 44 1 3.1375 -5.9604 -0.3654 45 1 2.9623 -3.9477 -0.2691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085636685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:42 Heat of formation + Delta-G solvation = 171.718755 kcal Electronic energy + Delta-G solvation = -28627.504237 eV Core-core repulsion = 24650.330928 eV Total energy + Delta-G solvation = -3977.173309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.17384 -40.49515 -39.38050 -37.51337 -35.39937 -34.45915 -32.84957 -32.09164 -30.78269 -30.24579 -28.35297 -27.72972 -26.69387 -24.79066 -24.42039 -23.21990 -22.80531 -21.54577 -21.37418 -19.64200 -18.88982 -18.42376 -17.42697 -16.94546 -16.59029 -16.12422 -16.05583 -15.82558 -15.35559 -15.27535 -14.65063 -14.53830 -14.21344 -13.91597 -13.77518 -13.53757 -13.43807 -13.37099 -12.93816 -12.70751 -12.28338 -12.27112 -11.64279 -11.52837 -11.33251 -11.13287 -10.94980 -10.78630 -10.62313 -10.39184 -10.29647 -10.17157 -9.82310 -9.67769 -9.60018 -9.55418 -9.38490 -8.72043 -8.67641 -8.27759 -6.76920 -5.67950 -2.99508 0.08670 0.59111 1.51932 1.74443 1.90478 3.12363 3.21999 3.44632 3.48125 3.48680 3.49993 3.81926 3.90530 4.08776 4.34238 4.39184 4.50005 4.54151 4.68779 4.83012 4.89902 5.04800 5.06191 5.23536 5.27036 5.34767 5.44940 5.48680 5.53425 5.61786 5.67182 5.83686 5.94536 6.02008 6.05249 6.20400 6.46546 6.49952 6.64457 6.77709 6.84865 6.91131 7.07094 7.31140 7.36980 7.56052 7.66142 7.70130 8.07954 8.43255 9.13265 9.80022 10.71699 11.49652 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025184 B = 0.002117 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.545570 B =13226.010654 C =13731.046950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.602 5.602 3 C 0.118 3.882 4 C 0.128 3.872 5 H 0.040 0.960 6 C -0.159 4.159 7 C 0.164 3.836 8 N -0.600 5.600 9 C -0.222 4.222 10 H 0.078 0.922 11 C -0.008 4.008 12 N -0.920 5.920 13 Si 0.909 3.091 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.589 3.411 18 O -0.530 6.530 19 C -0.265 4.265 20 C 0.075 3.925 21 N -0.296 5.296 22 N -0.314 5.314 23 C 0.108 3.892 24 C -0.073 4.073 25 C -0.148 4.148 26 C 0.088 3.912 27 N -0.456 5.456 28 C 0.089 3.911 29 C 0.124 3.876 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.065 0.935 38 H 0.024 0.976 39 H 0.253 0.747 40 H 0.215 0.785 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.165 0.835 44 H 0.165 0.835 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.322 -24.518 5.943 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.335 5.335 3 C -0.005 4.005 4 C 0.020 3.980 5 H 0.057 0.943 6 C -0.197 4.197 7 C 0.039 3.961 8 N -0.326 5.326 9 C -0.349 4.349 10 H 0.095 0.905 11 C -0.205 4.205 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.376 3.624 18 O -0.407 6.407 19 C -0.279 4.279 20 C -0.113 4.113 21 N -0.113 5.113 22 N -0.088 5.088 23 C 0.013 3.987 24 C -0.100 4.100 25 C -0.168 4.168 26 C -0.070 4.070 27 N -0.164 5.164 28 C -0.071 4.071 29 C -0.022 4.022 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.063 0.937 40 H 0.231 0.769 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.182 0.818 44 H 0.182 0.818 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -14.528 -25.523 5.925 29.960 hybrid contribution -0.136 2.073 0.484 2.133 sum -14.664 -23.450 6.409 28.390 Atomic orbital electron populations 1.22318 0.80731 1.03802 1.01107 1.47517 1.06367 1.06212 1.73411 1.21848 0.97727 0.82119 0.98811 1.22508 0.92571 0.90003 0.92930 0.94280 1.23854 0.99613 0.97656 0.98568 1.22105 0.99317 0.86603 0.88086 1.45958 1.32078 1.33940 1.20658 1.18929 1.15179 1.03379 0.97445 0.90468 1.24793 0.99762 0.99230 0.96693 1.69831 1.29985 1.40502 1.16383 0.86246 0.78349 0.82382 0.79058 1.21099 1.21648 1.21291 1.17101 0.86472 0.82166 0.76630 1.90815 1.13371 1.86803 1.49760 1.20452 0.94584 0.93935 1.18948 1.25276 0.95734 0.94230 0.96032 1.77252 1.04677 1.05333 1.24043 1.45529 1.07304 1.03683 1.52243 1.18715 0.96824 0.79677 1.03506 1.21413 0.98563 0.93155 0.96918 1.22155 0.99577 0.94805 1.00249 1.22933 0.88193 1.00553 0.95293 1.67796 1.32812 1.03652 1.12098 1.22682 0.95124 0.91644 0.97677 1.23059 0.95098 0.88238 0.95820 0.92408 0.90367 0.90456 0.91418 0.88762 0.89218 0.94156 0.91637 0.95813 0.93688 0.76939 0.83132 0.83585 0.81825 0.81767 0.78880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 8.70 59.85 0.52 1.11 16 2 N -0.60 -8.56 2.76 -182.85 -0.51 -9.06 16 3 C 0.12 2.11 5.38 -4.04 -0.02 2.08 16 4 C 0.13 2.65 4.60 -66.86 -0.31 2.34 16 5 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 6 C -0.16 -3.33 7.20 -25.81 -0.19 -3.51 16 7 C 0.16 4.12 7.39 -2.97 -0.02 4.10 16 8 N -0.60 -15.74 3.57 -170.75 -0.61 -16.35 16 9 C -0.22 -6.27 10.51 -15.06 -0.16 -6.43 16 10 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -28.12 11.52 55.49 0.64 -27.48 16 13 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 C 0.59 9.03 7.25 -12.53 -0.09 8.94 16 18 O -0.53 -10.20 14.52 5.27 0.08 -10.12 16 19 C -0.27 -3.22 5.92 -105.05 -0.62 -3.85 16 20 C 0.08 0.74 9.85 -16.95 -0.17 0.58 16 21 N -0.30 -3.17 11.85 30.88 0.37 -2.80 16 22 N -0.31 -3.27 3.77 -10.11 -0.04 -3.31 16 23 C 0.11 0.97 6.70 -83.45 -0.56 0.41 16 24 C -0.07 -0.54 9.77 -39.10 -0.38 -0.92 16 25 C -0.15 -0.78 10.11 -39.47 -0.40 -1.18 16 26 C 0.09 0.54 11.18 -17.52 -0.20 0.34 16 27 N -0.46 -3.96 10.35 -13.10 -0.14 -4.10 16 28 C 0.09 0.76 10.62 -17.35 -0.18 0.57 16 29 C 0.12 1.35 10.63 -16.43 -0.17 1.17 16 30 H 0.06 0.41 7.43 -51.93 -0.39 0.02 16 31 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 32 H 0.08 0.60 5.16 -51.93 -0.27 0.34 16 33 H 0.07 1.11 8.11 -51.93 -0.42 0.69 16 34 H 0.09 1.99 7.33 -51.93 -0.38 1.61 16 35 H 0.09 2.01 6.21 -51.93 -0.32 1.69 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.81 7.40 -51.93 -0.38 1.43 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.21 1.44 4.55 -52.48 -0.24 1.21 16 41 H 0.15 1.03 7.77 -52.49 -0.41 0.62 16 42 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 43 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.17 1.13 6.74 -52.49 -0.35 0.78 16 45 H 0.19 1.72 7.03 -52.49 -0.37 1.35 16 LS Contribution 372.99 15.07 5.62 5.62 Total: -1.00 -36.60 372.99 -8.26 -44.87 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.61 Total: -0.24 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -3.05 Total: 5.43 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: -0.28 Total: -63.10 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.60 -8.26 -44.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085636685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.587 kcal (2) G-P(sol) polarization free energy of solvation -36.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds