Wall clock time and date at job start Sat Apr 11 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99469 * 2 1 4 4 C 1.53002 * 109.47244 * 275.91162 * 3 2 1 5 5 H 1.08997 * 112.96335 * 69.00381 * 4 3 2 6 6 C 1.53949 * 113.76916 * 297.32664 * 4 3 2 7 7 C 1.53942 * 86.29147 * 222.09430 * 6 4 3 8 8 N 1.47577 * 113.76831 * 200.83248 * 4 3 2 9 9 C 1.36938 * 134.49460 * 318.93596 * 8 4 3 10 10 H 1.07993 * 119.99620 * 5.20834 * 9 8 4 11 11 C 1.38811 * 120.00034 * 185.19829 * 9 8 4 12 12 N 1.31614 * 120.00037 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00044 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46804 * 60.00176 * 13 11 9 15 15 H 1.48500 * 109.47493 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47014 * 300.00509 * 13 11 9 17 17 C 1.34776 * 120.00071 * 180.02562 * 2 1 3 18 18 O 1.21609 * 119.99482 * 174.45655 * 17 2 1 19 19 C 1.47409 * 120.00240 * 354.73685 * 17 2 1 20 20 C 1.41332 * 126.40761 * 351.43705 * 19 17 2 21 21 N 1.30477 * 108.06869 * 180.02562 * 20 19 17 22 22 N 1.39938 * 108.91175 * 0.02562 * 21 20 19 23 23 C 1.40169 * 125.77040 * 179.97438 * 22 21 20 24 24 C 1.39261 * 120.48499 * 0.03375 * 23 22 21 25 25 C 1.38510 * 118.36633 * 179.97438 * 24 23 22 26 26 C 1.38278 * 119.22843 * 359.97438 * 25 24 23 27 27 N 1.31860 * 120.90798 * 0.02562 * 26 25 24 28 28 C 1.31815 * 121.79768 * 359.65695 * 27 26 25 29 29 C 1.34537 * 108.45754 * 359.73076 * 22 21 20 30 30 H 1.09003 * 109.46937 * 265.85448 * 1 2 3 31 31 H 1.09001 * 109.47445 * 25.85844 * 1 2 3 32 32 H 1.09007 * 109.47288 * 145.86221 * 1 2 3 33 33 H 1.08996 * 109.47486 * 35.91587 * 3 2 1 34 34 H 1.09001 * 109.46490 * 155.91375 * 3 2 1 35 35 H 1.09000 * 113.74057 * 336.43927 * 6 4 3 36 36 H 1.08999 * 113.74361 * 107.63956 * 6 4 3 37 37 H 1.08998 * 113.77583 * 137.90893 * 7 6 4 38 38 H 1.09002 * 113.76676 * 269.19809 * 7 6 4 39 39 H 0.97006 * 119.99983 * 179.97438 * 12 11 9 40 40 H 1.08003 * 125.96691 * 0.03206 * 20 19 17 41 41 H 1.07999 * 120.81905 * 0.02562 * 24 23 22 42 42 H 1.08001 * 120.39158 * 179.97438 * 25 24 23 43 43 H 1.07995 * 119.54287 * 180.02562 * 26 25 24 44 44 H 1.08002 * 119.66547 * 180.31563 * 28 27 26 45 45 H 1.07994 * 126.30988 * 180.26725 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3237 1.7848 -1.4348 5 1 1.3715 2.1067 -1.8563 6 6 3.1291 0.8546 -2.3601 7 6 3.7829 2.1345 -2.9119 8 7 3.4191 2.7556 -1.6235 9 6 3.9034 3.8095 -0.8956 10 1 3.5022 4.0180 0.0851 11 6 4.9102 4.6096 -1.4182 12 7 5.3989 4.3556 -2.6136 13 14 5.5714 6.0469 -0.4250 14 1 6.1382 5.5461 0.8531 15 1 6.6326 6.7380 -1.2004 16 1 4.4687 6.9992 -0.1381 17 6 2.1389 -1.1672 -0.0005 18 8 3.3507 -1.1695 -0.1023 19 6 1.4066 -2.4412 0.1160 20 6 0.0313 -2.5950 0.4028 21 7 -0.2379 -3.8715 0.4217 22 7 0.9346 -4.5863 0.1525 23 6 1.0467 -5.9820 0.0877 24 6 -0.0671 -6.7908 0.2989 25 6 0.0935 -8.1646 0.2240 26 6 1.3440 -8.6839 -0.0563 27 7 2.3788 -7.8903 -0.2513 28 6 2.2681 -6.5780 -0.1951 29 6 1.9349 -3.7073 -0.0389 30 1 -0.3633 -0.0743 1.0250 31 1 -0.3634 0.9248 -0.4482 32 1 -0.3634 -0.8506 -0.5767 33 1 1.6583 1.9996 0.6028 34 1 3.1916 1.1143 0.4194 35 1 3.8222 0.2013 -1.8301 36 1 2.5171 0.3232 -3.0888 37 1 4.8578 2.0461 -3.0691 38 1 3.2612 2.5596 -3.7694 39 1 6.1022 4.9150 -2.9790 40 1 -0.6739 -1.7954 0.5760 41 1 -1.0325 -6.3576 0.5150 42 1 -0.7482 -8.8225 0.3827 43 1 1.4749 -9.7542 -0.1163 44 1 3.1375 -5.9604 -0.3654 45 1 2.9623 -3.9477 -0.2691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085636685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:40 Heat of formation + Delta-G solvation = 147.399717 kcal Electronic energy + Delta-G solvation = -28628.558790 eV Core-core repulsion = 24650.330928 eV Total energy + Delta-G solvation = -3978.227862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.94752 -41.18489 -40.56681 -39.21295 -36.56443 -35.21332 -34.19147 -33.38815 -31.70036 -31.03934 -29.81261 -29.48705 -27.69723 -25.68878 -25.22924 -25.00351 -24.11505 -22.56020 -22.17903 -20.84844 -20.50705 -19.25357 -18.63050 -18.01160 -17.56200 -17.31306 -17.07835 -16.72780 -16.64549 -16.35757 -16.03441 -15.78773 -15.20558 -15.08752 -14.85220 -14.69688 -14.33068 -14.16107 -14.07942 -13.91265 -13.69664 -13.31295 -13.19986 -12.90019 -12.62489 -12.48454 -12.40988 -12.35689 -12.25062 -11.86978 -11.79501 -11.56695 -11.22144 -10.86806 -10.82593 -10.81023 -10.68372 -10.35514 -9.59783 -9.38041 -8.84679 -7.86504 -5.19183 -0.54352 0.07028 0.71014 1.01859 1.11794 1.45360 1.49980 1.55409 2.00823 2.40073 2.52088 2.69004 3.17298 3.31427 3.34943 3.47669 3.54824 3.68719 3.79622 3.85126 3.93819 3.97958 4.23201 4.25292 4.30836 4.33747 4.37485 4.48199 4.56188 4.57549 4.70216 4.83472 4.88101 4.90979 4.96961 5.00579 5.07213 5.13731 5.24843 5.27175 5.38818 5.54828 5.59141 5.79741 5.80332 5.97437 6.30105 6.52028 6.78236 6.94620 7.28393 7.65416 8.62539 9.31660 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025184 B = 0.002117 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.545570 B =13226.010654 C =13731.046950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.600 5.600 3 C 0.132 3.868 4 C 0.136 3.864 5 H 0.062 0.938 6 C -0.134 4.134 7 C 0.159 3.841 8 N -0.629 5.629 9 C -0.225 4.225 10 H 0.089 0.911 11 C -0.076 4.076 12 N -0.959 5.959 13 Si 0.979 3.021 14 H -0.278 1.278 15 H -0.298 1.298 16 H -0.273 1.273 17 C 0.586 3.414 18 O -0.582 6.582 19 C -0.285 4.285 20 C 0.087 3.913 21 N -0.307 5.307 22 N -0.311 5.311 23 C 0.082 3.918 24 C -0.078 4.078 25 C -0.135 4.135 26 C 0.087 3.913 27 N -0.483 5.483 28 C 0.080 3.920 29 C 0.124 3.876 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.027 0.973 38 H 0.019 0.981 39 H 0.246 0.754 40 H 0.245 0.755 41 H 0.156 0.844 42 H 0.182 0.818 43 H 0.194 0.806 44 H 0.169 0.831 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.517 -26.182 7.317 32.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.331 5.331 3 C 0.008 3.992 4 C 0.029 3.971 5 H 0.079 0.921 6 C -0.172 4.172 7 C 0.033 3.967 8 N -0.356 5.356 9 C -0.353 4.353 10 H 0.106 0.894 11 C -0.268 4.268 12 N -0.608 5.608 13 Si 0.807 3.193 14 H -0.204 1.204 15 H -0.224 1.224 16 H -0.198 1.198 17 C 0.376 3.624 18 O -0.463 6.463 19 C -0.299 4.299 20 C -0.100 4.100 21 N -0.124 5.124 22 N -0.084 5.084 23 C -0.012 4.012 24 C -0.105 4.105 25 C -0.155 4.155 26 C -0.070 4.070 27 N -0.191 5.191 28 C -0.080 4.080 29 C -0.023 4.023 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.055 0.945 40 H 0.260 0.740 41 H 0.173 0.827 42 H 0.200 0.800 43 H 0.211 0.789 44 H 0.186 0.814 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -17.813 -27.231 7.327 33.355 hybrid contribution 0.781 2.369 0.054 2.495 sum -17.032 -24.863 7.381 31.028 Atomic orbital electron populations 1.22691 0.77278 1.05164 1.03617 1.47513 1.08333 1.04454 1.72825 1.21397 0.96898 0.84222 0.96676 1.22679 0.91841 0.87817 0.94765 0.92106 1.23556 0.99118 0.95904 0.98618 1.22029 0.97353 0.89124 0.88203 1.46306 1.34155 1.34246 1.20869 1.19390 1.14699 1.03237 0.98016 0.89352 1.25696 1.00717 1.02382 0.98009 1.70040 1.30787 1.41688 1.18291 0.85146 0.77613 0.79108 0.77457 1.20390 1.22419 1.19842 1.17535 0.86023 0.83280 0.75579 1.90790 1.15692 1.87569 1.52229 1.20188 0.95663 0.92673 1.21416 1.25683 0.94989 0.94608 0.94736 1.77229 1.05000 1.05609 1.24596 1.45620 1.06988 1.04216 1.51543 1.18935 0.97743 0.79172 1.05353 1.21646 0.98220 0.94023 0.96611 1.22529 1.00357 0.94284 0.98310 1.23540 0.87973 1.01780 0.93678 1.67827 1.34262 1.03823 1.13218 1.22783 0.95348 0.91957 0.97897 1.23274 0.95740 0.88344 0.94985 0.89328 0.89468 0.88626 0.89445 0.92597 0.90918 0.91285 0.95402 0.96317 0.94505 0.73970 0.82662 0.80018 0.78877 0.81430 0.78052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 8.70 127.77 1.11 1.91 16 2 N -0.60 -16.02 2.76 -850.67 -2.35 -18.37 16 3 C 0.13 4.62 5.38 86.38 0.46 5.08 16 4 C 0.14 5.50 4.60 45.10 0.21 5.71 16 5 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 6 C -0.13 -5.65 7.20 31.25 0.23 -5.42 16 7 C 0.16 8.24 7.39 86.48 0.64 8.88 16 8 N -0.63 -33.51 3.57 -694.13 -2.48 -35.99 16 9 C -0.23 -12.89 10.51 84.03 0.88 -12.00 16 10 H 0.09 4.72 7.83 -2.91 -0.02 4.69 16 11 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 12 N -0.96 -60.80 11.52 21.65 0.25 -60.55 16 13 Si 0.98 47.22 29.55 68.60 2.03 49.24 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 17 C 0.59 17.75 7.25 86.66 0.63 18.38 16 18 O -0.58 -23.15 14.52 -4.06 -0.06 -23.21 16 19 C -0.29 -6.62 5.92 -20.14 -0.12 -6.74 16 20 C 0.09 1.51 9.85 85.66 0.84 2.35 16 21 N -0.31 -5.96 11.85 -56.23 -0.67 -6.62 16 22 N -0.31 -6.16 3.77 -185.91 -0.70 -6.86 16 23 C 0.08 1.40 6.70 38.19 0.26 1.65 16 24 C -0.08 -0.99 9.77 22.58 0.22 -0.77 16 25 C -0.14 -1.02 10.11 22.34 0.23 -0.80 16 26 C 0.09 0.86 11.18 84.70 0.95 1.81 16 27 N -0.48 -7.89 10.35 -195.35 -2.02 -9.91 16 28 C 0.08 1.32 10.62 84.83 0.90 2.22 16 29 C 0.12 2.67 10.63 84.24 0.90 3.56 16 30 H 0.09 0.83 7.43 -2.39 -0.02 0.81 16 31 H 0.09 1.20 8.04 -2.39 -0.02 1.18 16 32 H 0.10 1.11 5.16 -2.38 -0.01 1.10 16 33 H 0.09 2.69 8.11 -2.39 -0.02 2.67 16 34 H 0.06 2.40 7.33 -2.39 -0.02 2.39 16 35 H 0.07 3.37 6.21 -2.39 -0.01 3.36 16 36 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.03 1.63 7.40 -2.39 -0.02 1.61 16 38 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 40 H 0.24 2.32 4.55 -2.91 -0.01 2.30 16 41 H 0.16 1.78 7.77 -2.91 -0.02 1.76 16 42 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 43 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 44 H 0.17 2.40 6.74 -2.91 -0.02 2.39 16 45 H 0.20 3.74 7.03 -2.91 -0.02 3.71 16 Total: -1.00 -83.41 372.99 3.82 -79.59 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 1.03 Total: 10.87 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 8.80 Total: 21.81 kcal Atomic # 7 Polarization: -130.33 SS G_CDS: -7.97 Total: -138.30 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.06 Total: -23.21 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -83.41 3.82 -79.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085636685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.988 kcal (2) G-P(sol) polarization free energy of solvation -83.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds