Wall clock time and date at job start Sat Apr 11 2020 06:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99580 * 2 1 4 4 C 1.52998 * 109.47051 * 264.77825 * 3 2 1 5 5 H 1.08997 * 112.96513 * 294.36438 * 4 3 2 6 6 C 1.53947 * 113.77051 * 66.04225 * 4 3 2 7 7 C 1.53943 * 86.28987 * 137.90618 * 6 4 3 8 8 N 1.47579 * 113.77012 * 162.68527 * 4 3 2 9 9 C 1.36935 * 134.49222 * 41.06827 * 8 4 3 10 10 H 1.08004 * 120.00013 * 4.93288 * 9 8 4 11 11 C 1.38810 * 120.00049 * 184.92780 * 9 8 4 12 12 N 1.31624 * 120.00039 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00235 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46686 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47299 * 119.99788 * 13 11 9 16 16 H 1.48493 * 109.46869 * 240.00239 * 13 11 9 17 17 C 1.34775 * 120.00419 * 179.97438 * 2 1 3 18 18 O 1.21605 * 120.00065 * 181.64333 * 17 2 1 19 19 C 1.47416 * 120.00028 * 1.63959 * 17 2 1 20 20 C 1.41333 * 126.40691 * 345.91042 * 19 17 2 21 21 N 1.30478 * 108.06586 * 179.73684 * 20 19 17 22 22 N 1.39939 * 108.91174 * 0.44279 * 21 20 19 23 23 C 1.40171 * 125.77127 * 179.81037 * 22 21 20 24 24 C 1.39268 * 120.48462 * 359.69705 * 23 22 21 25 25 C 1.38504 * 118.36438 * 179.97438 * 24 23 22 26 26 C 1.38267 * 119.23073 * 0.24834 * 25 24 23 27 27 N 1.31863 * 120.91148 * 359.49956 * 26 25 24 28 28 C 1.31816 * 121.79680 * 0.49112 * 27 26 25 29 29 C 1.34532 * 108.45810 * 359.54664 * 22 21 20 30 30 H 1.09001 * 109.47291 * 264.11130 * 1 2 3 31 31 H 1.08993 * 109.47281 * 24.11580 * 1 2 3 32 32 H 1.08999 * 109.46712 * 144.11643 * 1 2 3 33 33 H 1.08997 * 109.47596 * 24.78190 * 3 2 1 34 34 H 1.09000 * 109.46951 * 144.78318 * 3 2 1 35 35 H 1.08993 * 113.74176 * 252.25764 * 6 4 3 36 36 H 1.09006 * 113.73704 * 23.45439 * 6 4 3 37 37 H 1.08998 * 113.76641 * 90.69967 * 7 6 4 38 38 H 1.08996 * 113.76905 * 221.97604 * 7 6 4 39 39 H 0.97000 * 120.00137 * 180.02562 * 12 11 9 40 40 H 1.08000 * 125.96497 * 0.02562 * 20 19 17 41 41 H 1.08006 * 120.81443 * 359.97438 * 24 23 22 42 42 H 1.07997 * 120.38249 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.54621 * 179.72491 * 26 25 24 44 44 H 1.07991 * 119.67003 * 179.75393 * 28 27 26 45 45 H 1.08000 * 126.31126 * 180.23167 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.5660 1.6448 -1.4365 5 1 3.2727 0.9499 -1.8900 6 6 1.3505 1.9625 -2.3262 7 6 2.1839 3.1354 -2.8736 8 7 2.9366 3.0636 -1.6036 9 6 3.6784 3.9540 -0.8743 10 1 4.2050 3.6226 0.0086 11 6 3.7537 5.2824 -1.2696 12 7 3.1117 5.6864 -2.3452 13 14 4.7664 6.4970 -0.2751 14 1 5.3846 5.7972 0.8796 15 1 5.8321 7.0731 -1.1339 16 1 3.8868 7.5862 0.2200 17 6 2.1389 -1.1671 0.0005 18 8 3.3546 -1.1673 0.0307 19 6 1.4024 -2.4436 -0.0354 20 6 0.0211 -2.6221 0.2049 21 7 -0.2514 -3.8915 0.0750 22 7 0.9264 -4.5784 -0.2399 23 6 1.0377 -5.9594 -0.4527 24 6 -0.0815 -6.7822 -0.3520 25 6 0.0785 -8.1403 -0.5714 26 6 1.3345 -8.6318 -0.8756 27 7 2.3735 -7.8251 -0.9682 28 6 2.2648 -6.5269 -0.7674 29 6 1.9329 -3.6884 -0.3098 30 1 -0.3634 -0.1054 1.0222 31 1 -0.3633 0.9379 -0.4199 32 1 -0.3633 -0.8326 -0.6024 33 1 1.5711 2.0500 0.4307 34 1 3.1061 1.1637 0.5926 35 1 1.1361 1.1928 -3.0674 36 1 0.4672 2.2726 -1.7678 37 1 2.7793 2.8798 -3.7502 38 1 1.6157 4.0570 -2.9996 39 1 3.1646 6.6146 -2.6217 40 1 -0.6862 -1.8432 0.4484 41 1 -1.0502 -6.3712 -0.1088 42 1 -0.7673 -8.8083 -0.5014 43 1 1.4658 -9.6906 -1.0433 44 1 3.1393 -5.8984 -0.8481 45 1 2.9656 -3.9073 -0.5378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085636686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:45 Heat of formation + Delta-G solvation = 171.095963 kcal Electronic energy + Delta-G solvation = -28494.071208 eV Core-core repulsion = 24516.870892 eV Total energy + Delta-G solvation = -3977.200316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.19032 -40.50876 -39.37150 -37.67076 -35.37148 -34.46973 -32.86376 -32.11816 -30.80994 -30.27237 -28.42200 -27.81166 -26.61452 -24.81270 -24.43417 -23.30616 -22.85760 -21.55167 -21.38955 -19.68285 -19.05173 -18.38130 -17.44060 -16.97082 -16.65756 -16.06261 -16.05078 -15.91041 -15.40589 -15.24276 -14.66270 -14.57774 -14.26197 -14.01590 -13.76210 -13.52293 -13.44459 -13.37306 -12.91914 -12.71888 -12.36072 -12.19981 -11.79876 -11.53980 -11.40559 -11.22316 -10.97399 -10.76558 -10.67416 -10.41155 -10.30717 -10.18826 -9.84027 -9.73928 -9.66155 -9.58319 -9.50416 -8.73620 -8.70897 -8.30852 -6.81327 -5.70840 -3.04075 0.07249 0.57865 1.50381 1.73070 1.89528 3.09906 3.20653 3.41842 3.43799 3.48154 3.50263 3.80465 3.89147 4.07343 4.33212 4.37303 4.48621 4.51628 4.67272 4.81824 4.88679 5.04112 5.07487 5.21266 5.26697 5.34521 5.43789 5.47741 5.49231 5.60566 5.68924 5.82140 5.87192 6.01222 6.01651 6.22817 6.32736 6.47833 6.48521 6.65601 6.75998 6.87022 7.05879 7.29570 7.30640 7.49467 7.60597 7.64960 8.04693 8.37732 9.10268 9.76742 10.66680 11.45413 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027507 B = 0.002031 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.677108 B =13786.008608 C =14038.828649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.599 5.599 3 C 0.120 3.880 4 C 0.131 3.869 5 H 0.047 0.953 6 C -0.157 4.157 7 C 0.155 3.845 8 N -0.602 5.602 9 C -0.218 4.218 10 H 0.079 0.921 11 C -0.009 4.009 12 N -0.921 5.921 13 Si 0.909 3.091 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.588 3.412 18 O -0.541 6.541 19 C -0.265 4.265 20 C 0.077 3.923 21 N -0.295 5.295 22 N -0.314 5.314 23 C 0.108 3.892 24 C -0.073 4.073 25 C -0.147 4.147 26 C 0.088 3.912 27 N -0.456 5.456 28 C 0.089 3.911 29 C 0.123 3.877 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.022 0.978 38 H 0.078 0.922 39 H 0.252 0.748 40 H 0.215 0.785 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.165 0.835 44 H 0.165 0.835 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.596 -26.650 3.978 29.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.331 5.331 3 C -0.003 4.003 4 C 0.023 3.977 5 H 0.065 0.935 6 C -0.196 4.196 7 C 0.030 3.970 8 N -0.329 5.329 9 C -0.346 4.346 10 H 0.097 0.903 11 C -0.205 4.205 12 N -0.569 5.569 13 Si 0.740 3.260 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.376 3.624 18 O -0.419 6.419 19 C -0.279 4.279 20 C -0.111 4.111 21 N -0.112 5.112 22 N -0.087 5.087 23 C 0.013 3.987 24 C -0.100 4.100 25 C -0.168 4.168 26 C -0.070 4.070 27 N -0.164 5.164 28 C -0.072 4.072 29 C -0.023 4.023 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.231 0.769 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.182 0.818 44 H 0.182 0.818 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -10.896 -27.604 3.905 29.932 hybrid contribution 0.377 1.755 0.552 1.878 sum -10.519 -25.849 4.457 28.261 Atomic orbital electron populations 1.22424 0.80456 1.04208 1.01188 1.47558 1.06603 1.06108 1.72827 1.21818 0.96939 0.82383 0.99121 1.22522 0.93729 0.88518 0.92907 0.93511 1.23747 0.97446 0.99334 0.99044 1.22304 0.90725 0.95743 0.88261 1.46071 1.60259 1.04536 1.22034 1.19072 1.22134 0.88053 1.05339 0.90334 1.24773 1.00831 0.96844 0.98094 1.69833 1.46138 1.15636 1.25245 0.86079 0.79424 0.81316 0.79182 1.20427 1.21846 1.21785 1.17148 0.86443 0.82296 0.76557 1.90804 1.13183 1.87154 1.50741 1.20432 0.94395 0.94354 1.18716 1.25250 0.95629 0.93965 0.96275 1.77260 1.04452 1.06339 1.23173 1.45527 1.06790 1.04530 1.51888 1.18717 0.96756 0.80166 1.03074 1.21420 0.98603 0.93022 0.96976 1.22153 0.99560 0.95072 0.99965 1.22930 0.88145 1.00351 0.95547 1.67795 1.33033 1.03252 1.12308 1.22669 0.95086 0.92053 0.97361 1.23034 0.95035 0.87999 0.96266 0.92351 0.89940 0.90364 0.89666 0.90525 0.93476 0.90956 0.96003 0.90418 0.93828 0.76865 0.83097 0.83564 0.81818 0.81815 0.78956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 8.47 59.85 0.51 1.09 16 2 N -0.60 -8.60 2.79 -182.86 -0.51 -9.11 16 3 C 0.12 2.17 5.25 -4.04 -0.02 2.15 16 4 C 0.13 2.74 4.53 -66.86 -0.30 2.44 16 5 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 6 C -0.16 -2.95 7.31 -25.79 -0.19 -3.14 16 7 C 0.15 3.69 7.65 -2.85 -0.02 3.67 16 8 N -0.60 -15.50 3.58 -169.74 -0.61 -16.11 16 9 C -0.22 -6.14 10.51 -15.06 -0.16 -6.30 16 10 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 11 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 12 N -0.92 -27.45 11.32 55.49 0.63 -26.82 16 13 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 C 0.59 9.05 7.63 -12.52 -0.10 8.95 16 18 O -0.54 -10.41 16.58 5.27 0.09 -10.32 16 19 C -0.27 -3.22 5.90 -105.05 -0.62 -3.84 16 20 C 0.08 0.76 9.81 -16.95 -0.17 0.59 16 21 N -0.29 -3.16 11.85 30.88 0.37 -2.79 16 22 N -0.31 -3.25 3.77 -10.11 -0.04 -3.29 16 23 C 0.11 0.96 6.71 -83.45 -0.56 0.40 16 24 C -0.07 -0.53 9.77 -39.10 -0.38 -0.91 16 25 C -0.15 -0.77 10.10 -39.47 -0.40 -1.17 16 26 C 0.09 0.53 11.18 -17.53 -0.20 0.33 16 27 N -0.46 -3.90 10.35 -13.10 -0.14 -4.04 16 28 C 0.09 0.74 10.62 -17.35 -0.18 0.56 16 29 C 0.12 1.33 10.65 -16.43 -0.17 1.15 16 30 H 0.06 0.44 7.57 -51.93 -0.39 0.04 16 31 H 0.08 0.81 6.65 -51.93 -0.35 0.47 16 32 H 0.08 0.63 4.91 -51.93 -0.26 0.38 16 33 H 0.08 1.52 8.03 -51.93 -0.42 1.10 16 34 H 0.08 1.53 7.56 -51.93 -0.39 1.14 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.25 6.95 -51.93 -0.36 0.89 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 2.02 6.97 -51.93 -0.36 1.66 16 39 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.22 1.48 4.68 -52.49 -0.25 1.23 16 41 H 0.15 1.03 7.77 -52.48 -0.41 0.62 16 42 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16 43 H 0.16 0.51 8.06 -52.49 -0.42 0.08 16 44 H 0.16 1.09 6.74 -52.49 -0.35 0.74 16 45 H 0.19 1.67 7.04 -52.49 -0.37 1.31 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -36.16 374.26 -8.22 -44.38 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.56 Total: -0.53 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -3.06 Total: 5.62 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: -0.30 Total: -62.16 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.16 -8.22 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085636686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.472 kcal (2) G-P(sol) polarization free energy of solvation -36.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds