Wall clock time and date at job start Sat Apr 11 2020 06:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99709 * 2 1 4 4 C 1.53001 * 109.47213 * 263.20266 * 3 2 1 5 5 H 1.09000 * 112.96813 * 311.56550 * 4 3 2 6 6 C 1.53940 * 113.77247 * 179.88065 * 4 3 2 7 7 C 1.53949 * 86.29236 * 222.09473 * 6 4 3 8 8 N 1.47576 * 86.11430 * 23.60780 * 7 6 4 9 9 C 1.36939 * 134.49092 * 155.36186 * 8 7 6 10 10 H 1.08003 * 120.00156 * 182.80372 * 9 8 7 11 11 C 1.38808 * 120.00072 * 2.80724 * 9 8 7 12 12 N 1.31620 * 119.99942 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00141 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47119 * 60.00111 * 13 11 9 15 15 H 1.48505 * 109.47232 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46982 * 299.99991 * 13 11 9 17 17 C 1.34775 * 120.00126 * 180.02562 * 2 1 3 18 18 O 1.21560 * 119.99948 * 185.10268 * 17 2 1 19 19 C 1.47829 * 120.00161 * 5.10909 * 17 2 1 20 20 N 1.34575 * 126.02207 * 354.79356 * 19 17 2 21 21 C 1.30869 * 107.28728 * 180.02562 * 20 19 17 22 22 N 1.34878 * 107.59373 * 359.97438 * 21 20 19 23 23 C 1.40147 * 125.77155 * 180.02562 * 22 21 20 24 24 C 1.38859 * 120.06561 * 180.02562 * 23 22 21 25 25 C 1.38119 * 119.92753 * 179.70042 * 24 23 22 26 26 C 1.38278 * 120.06873 * 0.25736 * 25 24 23 27 27 C 1.38282 * 120.13636 * 0.04300 * 26 25 24 28 28 C 1.38113 * 120.07207 * 359.95980 * 27 26 25 29 29 N 1.28856 * 108.45938 * 0.27035 * 22 21 20 30 30 H 1.08998 * 109.46812 * 238.45820 * 1 2 3 31 31 H 1.08997 * 109.47281 * 358.45223 * 1 2 3 32 32 H 1.09000 * 109.46942 * 118.45989 * 1 2 3 33 33 H 1.08995 * 109.47527 * 23.20337 * 3 2 1 34 34 H 1.09001 * 109.47159 * 143.20551 * 3 2 1 35 35 H 1.09004 * 113.74378 * 336.44187 * 6 4 3 36 36 H 1.09008 * 113.74336 * 107.64169 * 6 4 3 37 37 H 1.08998 * 113.76813 * 137.90699 * 7 6 4 38 38 H 1.08995 * 113.76645 * 269.18994 * 7 6 4 39 39 H 0.97005 * 119.99905 * 180.02562 * 12 11 9 40 40 H 1.08005 * 126.19956 * 179.97438 * 21 20 19 41 41 H 1.07997 * 120.03355 * 359.97438 * 24 23 22 42 42 H 1.07996 * 119.96317 * 180.28087 * 25 24 23 43 43 H 1.07997 * 119.93042 * 180.02562 * 26 25 24 44 44 H 1.08004 * 119.96489 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.03898 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.6003 1.6251 -1.4324 5 1 3.0669 0.7946 -1.9621 6 6 3.3771 2.9492 -1.5473 7 6 2.5149 3.2313 -2.7911 8 7 1.5351 2.2997 -2.1995 9 6 0.1813 2.1294 -2.3156 10 1 -0.3213 1.3787 -1.7238 11 6 -0.5450 2.9217 -3.1941 12 7 0.0676 3.8362 -3.9157 13 14 -2.3916 2.6890 -3.3531 14 1 -3.0359 2.9292 -2.0369 15 1 -2.9277 3.6504 -4.3500 16 1 -2.6792 1.3021 -3.7992 17 6 2.1389 -1.1672 -0.0005 18 8 3.3509 -1.1693 0.0931 19 6 1.4042 -2.4448 -0.1151 20 7 0.0664 -2.5903 -0.1261 21 6 -0.1848 -3.8695 -0.2410 22 7 0.9988 -4.5135 -0.3016 23 6 1.1723 -5.8985 -0.4274 24 6 2.4509 -6.4377 -0.4781 25 6 2.6186 -7.8036 -0.5959 26 6 1.5149 -8.6334 -0.6688 27 6 0.2404 -8.0989 -0.6249 28 6 0.0660 -6.7339 -0.5072 29 7 1.9430 -3.6406 -0.2189 30 1 -0.3633 -0.5376 0.8758 31 1 -0.3634 1.0272 0.0278 32 1 -0.3633 -0.4897 -0.9035 33 1 1.5612 2.0557 0.4049 34 1 3.0918 1.1720 0.6155 35 1 3.1954 3.6377 -0.7220 36 1 4.4369 2.8187 -1.7663 37 1 2.1598 4.2598 -2.8555 38 1 2.9564 2.8748 -3.7217 39 1 -0.4400 4.3901 -4.5293 40 1 -1.1626 -4.3266 -0.2803 41 1 3.3133 -5.7900 -0.4209 42 1 3.6128 -8.2239 -0.6308 43 1 1.6487 -9.7011 -0.7605 44 1 -0.6198 -8.7496 -0.6824 45 1 -0.9297 -6.3170 -0.4725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085660596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:56 Heat of formation + Delta-G solvation = 172.042473 kcal Electronic energy + Delta-G solvation = -29135.403899 eV Core-core repulsion = 25158.244627 eV Total energy + Delta-G solvation = -3977.159272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.78628 -39.80293 -39.30001 -37.64325 -35.16759 -34.62234 -32.35713 -32.15769 -31.34448 -30.09361 -28.52285 -27.70599 -26.30010 -24.72451 -24.27261 -23.23518 -22.72878 -21.93176 -21.43773 -19.61503 -19.01886 -18.59822 -17.01180 -16.88466 -16.69865 -16.44409 -16.18552 -15.29544 -15.20388 -14.96343 -14.78881 -14.58643 -14.04655 -13.92565 -13.65396 -13.37959 -13.12186 -12.82374 -12.64465 -12.46382 -12.19449 -11.88611 -11.54507 -11.36161 -11.32553 -11.18481 -11.02552 -10.89612 -10.64780 -10.51798 -10.35967 -10.09455 -10.05832 -9.70737 -9.59935 -9.58138 -9.23407 -8.87049 -8.70569 -8.13144 -6.77064 -5.68054 -2.98644 0.26950 0.77052 1.62441 1.89970 2.08230 3.14303 3.23144 3.41993 3.46255 3.47803 3.54299 3.94105 4.07075 4.28685 4.45521 4.50949 4.55626 4.62466 4.79153 4.95084 5.09652 5.22421 5.42144 5.50384 5.65303 5.70269 5.72642 5.80962 5.85811 5.93167 5.94015 6.00762 6.12325 6.12794 6.15886 6.22673 6.32758 6.49553 6.55042 6.57738 6.70756 6.80205 7.03507 7.36181 7.51742 7.65536 7.69464 7.88005 8.08148 8.41157 9.13703 9.80774 10.72784 11.49744 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.002819 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.499609 B = 9929.769510 C =11087.964006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.578 5.578 3 C 0.120 3.880 4 C 0.127 3.873 5 H 0.046 0.954 6 C -0.158 4.158 7 C 0.162 3.838 8 N -0.602 5.602 9 C -0.223 4.223 10 H 0.089 0.911 11 C -0.010 4.010 12 N -0.922 5.922 13 Si 0.903 3.097 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.608 3.392 18 O -0.526 6.526 19 C 0.166 3.834 20 N -0.465 5.465 21 C 0.191 3.809 22 N -0.256 5.256 23 C 0.133 3.867 24 C -0.103 4.103 25 C -0.099 4.099 26 C -0.117 4.117 27 C -0.097 4.097 28 C -0.123 4.123 29 N -0.256 5.256 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.252 0.748 40 H 0.227 0.773 41 H 0.144 0.856 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 -23.044 9.417 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.309 5.309 3 C -0.003 4.003 4 C 0.019 3.981 5 H 0.063 0.937 6 C -0.197 4.197 7 C 0.037 3.963 8 N -0.329 5.329 9 C -0.351 4.351 10 H 0.107 0.893 11 C -0.207 4.207 12 N -0.570 5.570 13 Si 0.733 3.267 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.390 3.610 18 O -0.400 6.400 19 C -0.114 4.114 20 N -0.189 5.189 21 C -0.103 4.103 22 N -0.045 5.045 23 C 0.042 3.958 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.136 4.136 27 C -0.116 4.116 28 C -0.143 4.143 29 N -0.092 5.092 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.243 0.757 41 H 0.161 0.839 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.155 0.845 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.896 -22.648 9.364 24.524 hybrid contribution -1.495 -0.495 -0.537 1.663 sum -0.599 -23.143 8.828 24.777 Atomic orbital electron populations 1.22098 0.77831 1.03132 1.02201 1.47521 1.08183 1.04957 1.70275 1.22072 0.96538 0.82947 0.98721 1.22614 0.89709 0.94495 0.91288 0.93677 1.23781 0.97406 0.97433 1.01127 1.22121 0.86257 0.96391 0.91578 1.46190 1.01195 1.35090 1.50375 1.19312 0.80739 1.15985 1.19068 0.89315 1.24785 0.97712 0.99246 0.98923 1.69825 1.34202 1.24092 1.28857 0.86336 0.85587 0.77244 0.77489 1.21000 1.21725 1.21321 1.16248 0.85615 0.80921 0.78177 1.90792 1.12585 1.86329 1.50330 1.23999 0.88062 0.93549 1.05767 1.71701 1.13724 1.14602 1.18869 1.26710 0.93382 0.88466 1.01713 1.44607 1.05101 1.06010 1.48767 1.17688 0.95830 0.77760 1.04547 1.21125 0.95833 0.96105 0.99220 1.21156 0.99790 0.92303 0.98487 1.21357 0.92441 1.00520 0.99233 1.21021 0.97985 0.93738 0.98865 1.20877 0.97248 0.93705 1.02516 1.74369 1.16654 0.98664 1.19524 0.92271 0.89620 0.91067 0.89228 0.90435 0.90656 0.92929 0.91208 0.95821 0.93808 0.75682 0.83866 0.84631 0.85065 0.84536 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.57 7.35 59.85 0.44 2.01 16 2 N -0.58 -10.96 2.89 -182.70 -0.53 -11.49 16 3 C 0.12 2.27 5.25 -4.04 -0.02 2.25 16 4 C 0.13 2.75 4.49 -66.86 -0.30 2.45 16 5 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 6 C -0.16 -3.13 7.86 -25.81 -0.20 -3.34 16 7 C 0.16 3.94 7.45 -2.98 -0.02 3.92 16 8 N -0.60 -15.44 3.57 -170.78 -0.61 -16.06 16 9 C -0.22 -6.08 10.35 -15.06 -0.16 -6.24 16 10 H 0.09 2.25 3.95 -52.48 -0.21 2.04 16 11 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 12 N -0.92 -27.63 11.45 55.49 0.64 -27.00 16 13 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 C 0.61 12.05 7.62 -12.34 -0.09 11.95 16 18 O -0.53 -11.54 16.75 5.31 0.09 -11.45 16 19 C 0.17 2.96 7.71 -156.30 -1.21 1.76 16 20 N -0.46 -7.14 7.99 -12.29 -0.10 -7.24 16 21 C 0.19 2.22 11.93 -90.22 -1.08 1.14 16 22 N -0.26 -3.30 3.52 -11.77 -0.04 -3.34 16 23 C 0.13 1.33 6.67 -83.60 -0.56 0.77 16 24 C -0.10 -0.99 9.62 -39.40 -0.38 -1.36 16 25 C -0.10 -0.66 10.04 -39.61 -0.40 -1.06 16 26 C -0.12 -0.62 10.04 -39.55 -0.40 -1.02 16 27 C -0.10 -0.51 10.04 -39.61 -0.40 -0.91 16 28 C -0.12 -0.83 9.45 -39.40 -0.37 -1.20 16 29 N -0.26 -4.27 11.33 32.08 0.36 -3.91 16 30 H 0.06 0.91 7.36 -51.93 -0.38 0.53 16 31 H 0.09 1.54 6.40 -51.93 -0.33 1.21 16 32 H 0.07 1.34 6.79 -51.93 -0.35 0.99 16 33 H 0.09 1.65 7.77 -51.93 -0.40 1.25 16 34 H 0.08 1.38 7.57 -51.93 -0.39 0.99 16 35 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 36 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 37 H 0.07 1.83 7.29 -51.93 -0.38 1.46 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.23 1.37 7.01 -52.48 -0.37 1.00 16 41 H 0.14 1.54 7.68 -52.49 -0.40 1.14 16 42 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 44 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 45 H 0.14 0.57 6.71 -52.49 -0.35 0.22 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -36.01 373.27 -10.49 -46.50 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.66 Total: 0.62 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: -5.24 Total: 10.73 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -0.28 Total: -69.03 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.01 -10.49 -46.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085660596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.542 kcal (2) G-P(sol) polarization free energy of solvation -36.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds