Wall clock time and date at job start Sat Apr 11 2020 06:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99709 * 2 1 4 4 C 1.53001 * 109.47213 * 263.20266 * 3 2 1 5 5 H 1.09000 * 112.96813 * 311.56550 * 4 3 2 6 6 C 1.53940 * 113.77247 * 179.88065 * 4 3 2 7 7 C 1.53949 * 86.29236 * 222.09473 * 6 4 3 8 8 N 1.47576 * 86.11430 * 23.60780 * 7 6 4 9 9 C 1.36939 * 134.49092 * 155.36186 * 8 7 6 10 10 H 1.08003 * 120.00156 * 182.80372 * 9 8 7 11 11 C 1.38808 * 120.00072 * 2.80724 * 9 8 7 12 12 N 1.31620 * 119.99942 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00141 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47119 * 60.00111 * 13 11 9 15 15 H 1.48505 * 109.47232 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46982 * 299.99991 * 13 11 9 17 17 C 1.34775 * 120.00126 * 180.02562 * 2 1 3 18 18 O 1.21560 * 119.99948 * 185.10268 * 17 2 1 19 19 C 1.47829 * 120.00161 * 5.10909 * 17 2 1 20 20 N 1.34575 * 126.02207 * 354.79356 * 19 17 2 21 21 C 1.30869 * 107.28728 * 180.02562 * 20 19 17 22 22 N 1.34878 * 107.59373 * 359.97438 * 21 20 19 23 23 C 1.40147 * 125.77155 * 180.02562 * 22 21 20 24 24 C 1.38859 * 120.06561 * 180.02562 * 23 22 21 25 25 C 1.38119 * 119.92753 * 179.70042 * 24 23 22 26 26 C 1.38278 * 120.06873 * 0.25736 * 25 24 23 27 27 C 1.38282 * 120.13636 * 0.04300 * 26 25 24 28 28 C 1.38113 * 120.07207 * 359.95980 * 27 26 25 29 29 N 1.28856 * 108.45938 * 0.27035 * 22 21 20 30 30 H 1.08998 * 109.46812 * 238.45820 * 1 2 3 31 31 H 1.08997 * 109.47281 * 358.45223 * 1 2 3 32 32 H 1.09000 * 109.46942 * 118.45989 * 1 2 3 33 33 H 1.08995 * 109.47527 * 23.20337 * 3 2 1 34 34 H 1.09001 * 109.47159 * 143.20551 * 3 2 1 35 35 H 1.09004 * 113.74378 * 336.44187 * 6 4 3 36 36 H 1.09008 * 113.74336 * 107.64169 * 6 4 3 37 37 H 1.08998 * 113.76813 * 137.90699 * 7 6 4 38 38 H 1.08995 * 113.76645 * 269.18994 * 7 6 4 39 39 H 0.97005 * 119.99905 * 180.02562 * 12 11 9 40 40 H 1.08005 * 126.19956 * 179.97438 * 21 20 19 41 41 H 1.07997 * 120.03355 * 359.97438 * 24 23 22 42 42 H 1.07996 * 119.96317 * 180.28087 * 25 24 23 43 43 H 1.07997 * 119.93042 * 180.02562 * 26 25 24 44 44 H 1.08004 * 119.96489 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.03898 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.6003 1.6251 -1.4324 5 1 3.0669 0.7946 -1.9621 6 6 3.3771 2.9492 -1.5473 7 6 2.5149 3.2313 -2.7911 8 7 1.5351 2.2997 -2.1995 9 6 0.1813 2.1294 -2.3156 10 1 -0.3213 1.3787 -1.7238 11 6 -0.5450 2.9217 -3.1941 12 7 0.0676 3.8362 -3.9157 13 14 -2.3916 2.6890 -3.3531 14 1 -3.0359 2.9292 -2.0369 15 1 -2.9277 3.6504 -4.3500 16 1 -2.6792 1.3021 -3.7992 17 6 2.1389 -1.1672 -0.0005 18 8 3.3509 -1.1693 0.0931 19 6 1.4042 -2.4448 -0.1151 20 7 0.0664 -2.5903 -0.1261 21 6 -0.1848 -3.8695 -0.2410 22 7 0.9988 -4.5135 -0.3016 23 6 1.1723 -5.8985 -0.4274 24 6 2.4509 -6.4377 -0.4781 25 6 2.6186 -7.8036 -0.5959 26 6 1.5149 -8.6334 -0.6688 27 6 0.2404 -8.0989 -0.6249 28 6 0.0660 -6.7339 -0.5072 29 7 1.9430 -3.6406 -0.2189 30 1 -0.3633 -0.5376 0.8758 31 1 -0.3634 1.0272 0.0278 32 1 -0.3633 -0.4897 -0.9035 33 1 1.5612 2.0557 0.4049 34 1 3.0918 1.1720 0.6155 35 1 3.1954 3.6377 -0.7220 36 1 4.4369 2.8187 -1.7663 37 1 2.1598 4.2598 -2.8555 38 1 2.9564 2.8748 -3.7217 39 1 -0.4400 4.3901 -4.5293 40 1 -1.1626 -4.3266 -0.2803 41 1 3.3133 -5.7900 -0.4209 42 1 3.6128 -8.2239 -0.6308 43 1 1.6487 -9.7011 -0.7605 44 1 -0.6198 -8.7496 -0.6824 45 1 -0.9297 -6.3170 -0.4725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085660596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:55 Heat of formation + Delta-G solvation = 150.968427 kcal Electronic energy + Delta-G solvation = -29136.317738 eV Core-core repulsion = 25158.244627 eV Total energy + Delta-G solvation = -3978.073111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.82856 -41.05463 -40.17862 -39.41665 -36.61864 -35.60805 -34.23066 -33.29672 -31.94710 -31.07667 -30.10741 -29.51734 -27.73432 -25.97579 -25.23690 -25.05506 -23.96883 -22.85838 -22.36534 -20.98289 -20.72684 -19.55555 -18.74034 -18.03428 -17.89931 -17.66948 -17.18312 -16.82838 -16.46495 -16.23114 -15.86849 -15.75925 -15.33571 -15.20056 -14.74843 -14.70451 -14.45239 -14.05822 -13.94547 -13.79111 -13.40028 -13.09497 -12.99497 -12.88962 -12.69782 -12.67868 -12.46709 -12.28275 -12.13392 -12.09784 -11.84652 -11.57977 -11.47790 -11.26068 -11.17651 -11.17024 -10.77856 -10.08604 -9.71895 -9.54582 -8.84787 -7.81733 -5.13969 -0.47644 0.27209 0.51868 0.99294 1.14653 1.47358 1.51139 1.56136 1.82507 2.14267 2.52069 2.70263 2.87918 3.16825 3.34460 3.45513 3.56331 3.84662 3.86354 3.96583 4.17787 4.22417 4.30120 4.32485 4.36279 4.42194 4.50186 4.55567 4.67861 4.71201 4.76667 4.89385 4.94448 4.97112 4.99446 5.05193 5.10388 5.27666 5.31293 5.36531 5.45207 5.46139 5.56619 5.64821 5.71497 5.89731 5.99828 6.20693 6.71357 6.97534 7.00223 7.70703 8.66555 9.36440 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.002819 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.499609 B = 9929.769510 C =11087.964006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.581 5.581 3 C 0.127 3.873 4 C 0.127 3.873 5 H 0.022 0.978 6 C -0.129 4.129 7 C 0.154 3.846 8 N -0.624 5.624 9 C -0.224 4.224 10 H 0.105 0.895 11 C -0.075 4.075 12 N -0.960 5.960 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.301 1.301 16 H -0.281 1.281 17 C 0.603 3.397 18 O -0.559 6.559 19 C 0.135 3.865 20 N -0.485 5.485 21 C 0.205 3.795 22 N -0.249 5.249 23 C 0.092 3.908 24 C -0.128 4.128 25 C -0.105 4.105 26 C -0.107 4.107 27 C -0.093 4.093 28 C -0.115 4.115 29 N -0.282 5.282 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.005 0.995 39 H 0.244 0.756 40 H 0.282 0.718 41 H 0.116 0.884 42 H 0.151 0.849 43 H 0.163 0.837 44 H 0.173 0.827 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 -26.382 10.738 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.312 5.312 3 C 0.005 3.995 4 C 0.020 3.980 5 H 0.040 0.960 6 C -0.168 4.168 7 C 0.028 3.972 8 N -0.350 5.350 9 C -0.352 4.352 10 H 0.122 0.878 11 C -0.267 4.267 12 N -0.610 5.610 13 Si 0.796 3.204 14 H -0.191 1.191 15 H -0.228 1.228 16 H -0.208 1.208 17 C 0.388 3.612 18 O -0.436 6.436 19 C -0.144 4.144 20 N -0.210 5.210 21 C -0.088 4.088 22 N -0.037 5.037 23 C 0.003 3.997 24 C -0.148 4.148 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.111 4.111 28 C -0.135 4.135 29 N -0.120 5.120 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.023 0.977 39 H 0.053 0.947 40 H 0.297 0.703 41 H 0.134 0.866 42 H 0.169 0.831 43 H 0.180 0.820 44 H 0.190 0.810 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.278 -26.028 10.718 28.177 hybrid contribution -0.777 0.254 -0.968 1.267 sum -2.055 -25.774 9.750 27.633 Atomic orbital electron populations 1.22027 0.76899 1.02741 1.02523 1.47599 1.08779 1.04792 1.69985 1.21942 0.97444 0.83376 0.96785 1.22661 0.88700 0.94518 0.92102 0.96034 1.23580 0.98086 0.96080 0.99021 1.22074 0.87363 0.94824 0.92939 1.46585 1.01506 1.35959 1.50930 1.19853 0.81875 1.15269 1.18206 0.87769 1.25629 1.02130 0.99591 0.99356 1.70036 1.35535 1.25445 1.30022 0.85306 0.80521 0.76839 0.77772 1.19089 1.22818 1.20751 1.16560 0.85453 0.81851 0.77355 1.90746 1.13959 1.87044 1.51878 1.23588 0.89195 0.93048 1.08562 1.71592 1.12382 1.16879 1.20184 1.27675 0.94675 0.87353 0.99104 1.44801 1.04805 1.06749 1.47383 1.18143 0.97221 0.76633 1.07725 1.21128 0.95269 0.97286 1.01128 1.21395 1.01505 0.91185 0.98215 1.21807 0.91982 1.01909 0.96796 1.21519 0.99150 0.93422 0.97023 1.21289 0.97380 0.94018 1.00804 1.74272 1.18631 0.99019 1.20080 0.90081 0.90181 0.92482 0.88367 0.89010 0.88569 0.90181 0.93638 0.97672 0.94742 0.70327 0.86623 0.83099 0.81950 0.80959 0.81699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.43 7.35 127.77 0.94 4.37 16 2 N -0.58 -22.11 2.89 -850.22 -2.46 -24.56 16 3 C 0.13 4.77 5.25 86.38 0.45 5.23 16 4 C 0.13 5.56 4.49 45.09 0.20 5.76 16 5 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.13 -5.01 7.86 31.25 0.25 -4.77 16 7 C 0.15 7.69 7.45 86.48 0.64 8.33 16 8 N -0.62 -32.50 3.57 -694.21 -2.48 -34.98 16 9 C -0.22 -12.30 10.35 84.03 0.87 -11.43 16 10 H 0.10 5.26 3.95 -2.91 -0.01 5.24 16 11 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 12 N -0.96 -59.32 11.45 21.65 0.25 -59.08 16 13 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 15 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 C 0.60 24.57 7.62 86.78 0.66 25.23 16 18 O -0.56 -25.46 16.75 -3.90 -0.07 -25.52 16 19 C 0.13 4.91 7.71 137.09 1.06 5.97 16 20 N -0.49 -14.51 7.99 -192.79 -1.54 -16.05 16 21 C 0.20 4.31 11.93 180.21 2.15 6.46 16 22 N -0.25 -6.26 3.52 -191.14 -0.67 -6.94 16 23 C 0.09 1.75 6.67 38.11 0.25 2.00 16 24 C -0.13 -2.48 9.62 22.39 0.22 -2.27 16 25 C -0.10 -1.25 10.04 22.25 0.22 -1.02 16 26 C -0.11 -0.73 10.04 22.29 0.22 -0.51 16 27 C -0.09 -0.55 10.04 22.25 0.22 -0.32 16 28 C -0.11 -1.14 9.45 22.39 0.21 -0.92 16 29 N -0.28 -9.71 11.33 -52.42 -0.59 -10.30 16 30 H 0.08 2.41 7.36 -2.39 -0.02 2.39 16 31 H 0.08 2.81 6.40 -2.39 -0.02 2.79 16 32 H 0.06 2.12 6.79 -2.39 -0.02 2.11 16 33 H 0.10 3.52 7.77 -2.39 -0.02 3.50 16 34 H 0.09 3.20 7.57 -2.39 -0.02 3.18 16 35 H 0.10 3.36 8.10 -2.38 -0.02 3.35 16 36 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 37 H 0.05 2.48 7.29 -2.39 -0.02 2.46 16 38 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.24 14.77 8.31 -92.70 -0.77 14.00 16 40 H 0.28 2.13 7.01 -2.91 -0.02 2.10 16 41 H 0.12 2.78 7.68 -2.91 -0.02 2.76 16 42 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 43 H 0.16 0.13 8.06 -2.91 -0.02 0.10 16 44 H 0.17 -0.16 8.06 -2.91 -0.02 -0.19 16 45 H 0.17 0.54 6.71 -2.91 -0.02 0.52 16 Total: -1.00 -83.58 373.27 4.53 -79.05 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.03 Total: 12.46 kcal Atomic # 6 Polarization: 29.22 SS G_CDS: 9.04 Total: 38.26 kcal Atomic # 7 Polarization: -144.41 SS G_CDS: -7.50 Total: -151.91 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.07 Total: -25.52 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -83.58 4.53 -79.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085660596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.015 kcal (2) G-P(sol) polarization free energy of solvation -83.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds