Wall clock time and date at job start Sat Apr 11 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46507 * 119.99697 * 2 1 4 4 C 1.52994 * 109.46951 * 264.24287 * 3 2 1 5 5 H 1.09000 * 112.96857 * 310.96534 * 4 3 2 6 6 C 1.53951 * 113.76671 * 179.29123 * 4 3 2 7 7 C 1.53954 * 86.28482 * 222.09070 * 6 4 3 8 8 N 1.47577 * 113.77074 * 82.64780 * 4 3 2 9 9 C 1.36941 * 134.48809 * 318.92836 * 8 4 3 10 10 H 1.07995 * 120.00448 * 2.95312 * 9 8 4 11 11 C 1.38817 * 119.99474 * 182.95127 * 9 8 4 12 12 N 1.31619 * 120.00323 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99516 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47389 * 60.00142 * 13 11 9 15 15 H 1.48501 * 109.46894 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47127 * 299.99919 * 13 11 9 17 17 C 1.34774 * 119.99888 * 179.97438 * 2 1 3 18 18 O 1.21554 * 119.99565 * 185.07803 * 17 2 1 19 19 C 1.47935 * 120.00376 * 5.08049 * 17 2 1 20 20 C 1.39499 * 119.59458 * 174.78617 * 19 17 2 21 21 C 1.38231 * 119.18502 * 179.70390 * 20 19 17 22 22 C 1.39795 * 118.38683 * 0.57674 * 21 20 19 23 23 C 1.48265 * 120.43636 * 179.71383 * 22 21 20 24 24 C 1.40950 * 126.24836 * 359.75039 * 23 22 21 25 25 N 1.30633 * 108.06788 * 179.77409 * 24 23 22 26 26 N 1.40001 * 108.56933 * 0.22895 * 25 24 23 27 27 H 0.97001 * 125.87121 * 180.02562 * 26 25 24 28 28 C 1.34712 * 108.25684 * 0.02562 * 26 25 24 29 29 C 1.39736 * 119.12138 * 359.44549 * 22 21 20 30 30 N 1.31307 * 120.73283 * 0.27139 * 29 22 21 31 31 H 1.09006 * 109.46626 * 237.00559 * 1 2 3 32 32 H 1.09001 * 109.47016 * 356.99755 * 1 2 3 33 33 H 1.08997 * 109.47181 * 117.00646 * 1 2 3 34 34 H 1.09000 * 109.47116 * 24.24898 * 3 2 1 35 35 H 1.09003 * 109.46587 * 144.24326 * 3 2 1 36 36 H 1.08992 * 113.74277 * 336.43241 * 6 4 3 37 37 H 1.08996 * 113.74292 * 107.64393 * 6 4 3 38 38 H 1.09002 * 113.76270 * 137.90766 * 7 6 4 39 39 H 1.08997 * 113.76752 * 269.19010 * 7 6 4 40 40 H 0.97001 * 119.99565 * 180.02562 * 12 11 9 41 41 H 1.08002 * 120.40835 * 359.97438 * 20 19 17 42 42 H 1.08001 * 120.80690 * 180.29694 * 21 20 19 43 43 H 1.07999 * 125.96669 * 0.03937 * 24 23 22 44 44 H 1.07998 * 126.19758 * 179.97438 * 28 26 25 45 45 H 1.08006 * 119.63646 * 180.28982 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5777 1.6381 -1.4352 5 1 3.0454 0.8156 -1.9764 6 6 3.3402 2.9705 -1.5517 7 6 2.4589 3.2519 -2.7823 8 7 1.4949 2.3040 -2.1849 9 6 0.1419 2.1178 -2.2851 10 1 -0.3444 1.3592 -1.6898 11 6 -0.6045 2.9043 -3.1519 12 7 -0.0118 3.8285 -3.8777 13 14 -2.4502 2.6508 -3.2880 14 1 -3.0804 2.8797 -1.9631 15 1 -3.0099 3.6088 -4.2751 16 1 -2.7275 1.2620 -3.7348 17 6 2.1389 -1.1672 0.0005 18 8 3.3508 -1.1691 0.0937 19 6 1.4036 -2.4459 -0.1124 20 6 2.1138 -3.6417 -0.2210 21 6 1.4182 -4.8322 -0.3198 22 6 0.0210 -4.7876 -0.3190 23 6 -0.7704 -6.0365 -0.4292 24 6 -0.2540 -7.3427 -0.5464 25 7 -1.2611 -8.1720 -0.6140 26 7 -2.4501 -7.4357 -0.5486 27 1 -3.3478 -7.8020 -0.5769 28 6 -2.1330 -6.1310 -0.4396 29 6 -0.6199 -3.5509 -0.2074 30 7 0.0753 -2.4412 -0.1095 31 1 -0.3633 -0.5597 0.8620 32 1 -0.3633 1.0263 0.0538 33 1 -0.3633 -0.4666 -0.9156 34 1 1.5677 2.0519 0.4221 35 1 3.1014 1.1664 0.6005 36 1 3.1628 3.6519 -0.7198 37 1 4.3982 2.8517 -1.7856 38 1 2.0930 4.2774 -2.8352 39 1 2.8914 2.9056 -3.7209 40 1 -0.5335 4.3783 -4.4831 41 1 3.1938 -3.6378 -0.2234 42 1 1.9415 -5.7735 -0.4002 43 1 0.7917 -7.6115 -0.5713 44 1 -2.8299 -5.3090 -0.3689 45 1 -1.6990 -3.5072 -0.2012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085680549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:04 Heat of formation + Delta-G solvation = 156.605586 kcal Electronic energy + Delta-G solvation = -29079.050629 eV Core-core repulsion = 25101.221964 eV Total energy + Delta-G solvation = -3977.828666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.69523 -40.47510 -38.89709 -37.58034 -35.02740 -33.56224 -32.16301 -32.09304 -31.78744 -29.50430 -28.28212 -27.60088 -26.14128 -24.34116 -24.10824 -23.23614 -22.33569 -21.93140 -20.75685 -19.67746 -18.98118 -18.60299 -17.16712 -16.71359 -16.55520 -15.55572 -15.36199 -15.29444 -15.15231 -15.04495 -14.81050 -14.55747 -14.03650 -13.79682 -13.58287 -13.42925 -13.17593 -13.00312 -12.79595 -12.40480 -12.25857 -11.77243 -11.35400 -11.29789 -11.26901 -11.03780 -10.89142 -10.65479 -10.57249 -10.46539 -10.16310 -10.02882 -9.88707 -9.69807 -9.61939 -9.22717 -9.08799 -8.71205 -8.30278 -8.02814 -6.77213 -5.68509 -2.98689 0.40317 1.17499 1.49030 2.32659 2.38844 3.10045 3.37237 3.40802 3.44406 3.46710 3.98231 4.08881 4.24048 4.36883 4.50339 4.64325 4.67402 4.77728 4.93970 5.03725 5.18795 5.23849 5.46785 5.51176 5.63685 5.71773 5.81854 5.89941 5.96618 6.00029 6.04824 6.09432 6.17923 6.21961 6.33549 6.44963 6.54889 6.64188 6.72356 6.72451 6.80597 7.07706 7.13329 7.35849 7.52149 7.67079 7.71227 7.85579 8.07420 8.49236 9.13144 9.80474 10.72769 11.49553 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012347 B = 0.003050 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.208663 B = 9179.192671 C =10934.207347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.579 5.579 3 C 0.116 3.884 4 C 0.129 3.871 5 H 0.045 0.955 6 C -0.159 4.159 7 C 0.162 3.838 8 N -0.602 5.602 9 C -0.223 4.223 10 H 0.091 0.909 11 C -0.011 4.011 12 N -0.923 5.923 13 Si 0.902 3.098 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.287 1.287 17 C 0.563 3.437 18 O -0.547 6.547 19 C 0.076 3.924 20 C -0.102 4.102 21 C -0.086 4.086 22 C -0.029 4.029 23 C -0.202 4.202 24 C 0.071 3.929 25 N -0.294 5.294 26 N -0.471 5.471 27 H 0.443 0.557 28 C 0.083 3.917 29 C 0.091 3.909 30 N -0.437 5.437 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.024 0.976 40 H 0.252 0.748 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.188 0.812 44 H 0.185 0.815 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -19.137 9.701 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.308 5.308 3 C -0.007 4.007 4 C 0.021 3.979 5 H 0.062 0.938 6 C -0.198 4.198 7 C 0.036 3.964 8 N -0.329 5.329 9 C -0.351 4.351 10 H 0.109 0.891 11 C -0.207 4.207 12 N -0.570 5.570 13 Si 0.733 3.267 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.349 3.651 18 O -0.425 6.425 19 C -0.062 4.062 20 C -0.123 4.123 21 C -0.112 4.112 22 C -0.033 4.033 23 C -0.214 4.214 24 C -0.116 4.116 25 N -0.115 5.115 26 N -0.177 5.177 27 H 0.287 0.713 28 C -0.066 4.066 29 C -0.070 4.070 30 N -0.148 5.148 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.166 0.834 42 H 0.157 0.843 43 H 0.205 0.795 44 H 0.202 0.798 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.741 -19.427 9.593 21.839 hybrid contribution -1.037 -0.345 -0.524 1.212 sum -3.778 -19.773 9.068 22.079 Atomic orbital electron populations 1.22132 0.77950 1.02084 1.02160 1.47668 1.08187 1.05439 1.69468 1.22032 0.96532 0.83587 0.98558 1.22589 0.89529 0.94347 0.91449 0.93769 1.23773 0.97429 0.97524 1.01104 1.22156 0.86358 0.96177 0.91662 1.46216 1.01106 1.34452 1.51097 1.19367 0.80710 1.15707 1.19293 0.89143 1.24787 0.97674 0.99248 0.99013 1.69822 1.34148 1.23877 1.29173 0.86342 0.85677 0.77238 0.77436 1.21054 1.21734 1.21348 1.17821 0.86450 0.83071 0.77733 1.90746 1.13100 1.86986 1.51710 1.21238 0.89873 0.94284 1.00808 1.22002 1.02211 0.91408 0.96641 1.21456 0.92853 0.98562 0.98358 1.19216 0.93235 0.92388 0.98418 1.18794 0.91872 0.93074 1.17634 1.24043 0.99205 0.90279 0.98104 1.77258 0.90197 1.19865 1.24175 1.46240 1.08902 1.04668 1.57897 0.71263 1.22739 0.96738 0.88077 0.99023 1.22841 1.00201 0.86616 0.97329 1.68142 1.07250 1.29815 1.09595 0.92121 0.90536 0.91143 0.89657 0.90604 0.90723 0.92952 0.91294 0.95783 0.93831 0.83432 0.84320 0.79509 0.79811 0.82562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.69 7.21 59.85 0.43 2.12 16 2 N -0.58 -10.61 2.89 -182.65 -0.53 -11.14 16 3 C 0.12 2.18 5.26 -4.04 -0.02 2.15 16 4 C 0.13 2.75 4.49 -66.87 -0.30 2.45 16 5 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 6 C -0.16 -3.12 7.86 -25.79 -0.20 -3.32 16 7 C 0.16 3.90 7.45 -2.85 -0.02 3.88 16 8 N -0.60 -15.30 3.58 -169.71 -0.61 -15.91 16 9 C -0.22 -6.02 10.29 -15.06 -0.15 -6.17 16 10 H 0.09 2.26 3.77 -52.49 -0.20 2.07 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 12 N -0.92 -27.48 11.48 55.49 0.64 -26.84 16 13 Si 0.90 21.79 29.55 -169.99 -5.02 16.76 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 C 0.56 10.26 7.60 -12.29 -0.09 10.16 16 18 O -0.55 -10.95 15.96 5.32 0.08 -10.87 16 19 C 0.08 1.17 6.68 -82.99 -0.55 0.61 16 20 C -0.10 -1.29 9.61 -39.11 -0.38 -1.66 16 21 C -0.09 -0.85 9.69 -39.00 -0.38 -1.23 16 22 C -0.03 -0.28 5.90 -104.63 -0.62 -0.90 16 23 C -0.20 -1.68 6.05 -105.34 -0.64 -2.31 16 24 C 0.07 0.58 11.45 -17.04 -0.20 0.39 16 25 N -0.29 -2.65 12.66 30.82 0.39 -2.26 16 26 N -0.47 -2.97 7.32 30.65 0.22 -2.75 16 27 H 0.44 1.37 8.96 -182.67 -1.64 -0.27 16 28 C 0.08 0.52 11.40 -16.88 -0.19 0.33 16 29 C 0.09 0.99 10.73 -17.22 -0.18 0.80 16 30 N -0.44 -6.17 5.94 -9.55 -0.06 -6.23 16 31 H 0.06 0.91 7.03 -51.93 -0.37 0.54 16 32 H 0.08 1.37 6.42 -51.93 -0.33 1.04 16 33 H 0.07 1.29 6.58 -51.93 -0.34 0.95 16 34 H 0.09 1.58 7.78 -51.93 -0.40 1.18 16 35 H 0.08 1.34 7.53 -51.93 -0.39 0.95 16 36 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.80 7.31 -51.93 -0.38 1.42 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.15 1.78 7.64 -52.49 -0.40 1.38 16 42 H 0.14 0.93 7.16 -52.49 -0.38 0.55 16 43 H 0.19 1.03 7.41 -52.49 -0.39 0.64 16 44 H 0.18 0.56 7.30 -52.49 -0.38 0.18 16 45 H 0.16 1.21 7.03 -52.48 -0.37 0.84 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -35.80 370.66 -9.68 -45.48 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.79 Total: 1.27 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -3.59 Total: 6.89 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: 0.06 Total: -65.12 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.80 -9.68 -45.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085680549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.088 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds