Wall clock time and date at job start Sat Apr 11 2020 06:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46507 * 119.99697 * 2 1 4 4 C 1.52994 * 109.46951 * 264.24287 * 3 2 1 5 5 H 1.09000 * 112.96857 * 310.96534 * 4 3 2 6 6 C 1.53951 * 113.76671 * 179.29123 * 4 3 2 7 7 C 1.53954 * 86.28482 * 222.09070 * 6 4 3 8 8 N 1.47577 * 113.77074 * 82.64780 * 4 3 2 9 9 C 1.36941 * 134.48809 * 318.92836 * 8 4 3 10 10 H 1.07995 * 120.00448 * 2.95312 * 9 8 4 11 11 C 1.38817 * 119.99474 * 182.95127 * 9 8 4 12 12 N 1.31619 * 120.00323 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99516 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47389 * 60.00142 * 13 11 9 15 15 H 1.48501 * 109.46894 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47127 * 299.99919 * 13 11 9 17 17 C 1.34774 * 119.99888 * 179.97438 * 2 1 3 18 18 O 1.21554 * 119.99565 * 185.07803 * 17 2 1 19 19 C 1.47935 * 120.00376 * 5.08049 * 17 2 1 20 20 C 1.39499 * 119.59458 * 174.78617 * 19 17 2 21 21 C 1.38231 * 119.18502 * 179.70390 * 20 19 17 22 22 C 1.39795 * 118.38683 * 0.57674 * 21 20 19 23 23 C 1.48265 * 120.43636 * 179.71383 * 22 21 20 24 24 C 1.40950 * 126.24836 * 359.75039 * 23 22 21 25 25 N 1.30633 * 108.06788 * 179.77409 * 24 23 22 26 26 N 1.40001 * 108.56933 * 0.22895 * 25 24 23 27 27 H 0.97001 * 125.87121 * 180.02562 * 26 25 24 28 28 C 1.34712 * 108.25684 * 0.02562 * 26 25 24 29 29 C 1.39736 * 119.12138 * 359.44549 * 22 21 20 30 30 N 1.31307 * 120.73283 * 0.27139 * 29 22 21 31 31 H 1.09006 * 109.46626 * 237.00559 * 1 2 3 32 32 H 1.09001 * 109.47016 * 356.99755 * 1 2 3 33 33 H 1.08997 * 109.47181 * 117.00646 * 1 2 3 34 34 H 1.09000 * 109.47116 * 24.24898 * 3 2 1 35 35 H 1.09003 * 109.46587 * 144.24326 * 3 2 1 36 36 H 1.08992 * 113.74277 * 336.43241 * 6 4 3 37 37 H 1.08996 * 113.74292 * 107.64393 * 6 4 3 38 38 H 1.09002 * 113.76270 * 137.90766 * 7 6 4 39 39 H 1.08997 * 113.76752 * 269.19010 * 7 6 4 40 40 H 0.97001 * 119.99565 * 180.02562 * 12 11 9 41 41 H 1.08002 * 120.40835 * 359.97438 * 20 19 17 42 42 H 1.08001 * 120.80690 * 180.29694 * 21 20 19 43 43 H 1.07999 * 125.96669 * 0.03937 * 24 23 22 44 44 H 1.07998 * 126.19758 * 179.97438 * 28 26 25 45 45 H 1.08006 * 119.63646 * 180.28982 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5777 1.6381 -1.4352 5 1 3.0454 0.8156 -1.9764 6 6 3.3402 2.9705 -1.5517 7 6 2.4589 3.2519 -2.7823 8 7 1.4949 2.3040 -2.1849 9 6 0.1419 2.1178 -2.2851 10 1 -0.3444 1.3592 -1.6898 11 6 -0.6045 2.9043 -3.1519 12 7 -0.0118 3.8285 -3.8777 13 14 -2.4502 2.6508 -3.2880 14 1 -3.0804 2.8797 -1.9631 15 1 -3.0099 3.6088 -4.2751 16 1 -2.7275 1.2620 -3.7348 17 6 2.1389 -1.1672 0.0005 18 8 3.3508 -1.1691 0.0937 19 6 1.4036 -2.4459 -0.1124 20 6 2.1138 -3.6417 -0.2210 21 6 1.4182 -4.8322 -0.3198 22 6 0.0210 -4.7876 -0.3190 23 6 -0.7704 -6.0365 -0.4292 24 6 -0.2540 -7.3427 -0.5464 25 7 -1.2611 -8.1720 -0.6140 26 7 -2.4501 -7.4357 -0.5486 27 1 -3.3478 -7.8020 -0.5769 28 6 -2.1330 -6.1310 -0.4396 29 6 -0.6199 -3.5509 -0.2074 30 7 0.0753 -2.4412 -0.1095 31 1 -0.3633 -0.5597 0.8620 32 1 -0.3633 1.0263 0.0538 33 1 -0.3633 -0.4666 -0.9156 34 1 1.5677 2.0519 0.4221 35 1 3.1014 1.1664 0.6005 36 1 3.1628 3.6519 -0.7198 37 1 4.3982 2.8517 -1.7856 38 1 2.0930 4.2774 -2.8352 39 1 2.8914 2.9056 -3.7209 40 1 -0.5335 4.3783 -4.4831 41 1 3.1938 -3.6378 -0.2234 42 1 1.9415 -5.7735 -0.4002 43 1 0.7917 -7.6115 -0.5713 44 1 -2.8299 -5.3090 -0.3689 45 1 -1.6990 -3.5072 -0.2012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085680549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:03 Heat of formation + Delta-G solvation = 132.894822 kcal Electronic energy + Delta-G solvation = -29080.078805 eV Core-core repulsion = 25101.221964 eV Total energy + Delta-G solvation = -3978.856841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.29068 -41.54499 -40.20310 -39.22948 -36.45334 -34.43393 -34.16471 -32.96297 -32.37456 -30.59906 -29.90463 -29.16910 -27.48951 -25.47985 -25.21249 -24.89993 -23.78005 -22.55006 -21.46297 -20.99697 -20.71674 -19.18086 -18.76463 -18.23081 -17.73033 -16.91295 -16.64847 -16.46536 -16.29010 -16.00342 -15.72098 -15.70590 -15.43066 -15.20912 -14.69969 -14.56200 -14.35625 -14.27139 -13.83747 -13.79938 -13.48900 -13.19116 -13.04144 -12.87366 -12.75564 -12.63620 -12.44345 -12.25662 -11.88907 -11.76300 -11.46196 -11.36262 -11.23758 -11.10138 -10.76276 -10.72458 -10.57211 -10.18981 -9.56216 -8.95209 -8.81771 -7.80067 -5.11792 -0.48688 0.34212 0.93721 1.47676 1.49936 1.52035 1.56848 1.96551 2.01235 2.13815 2.53744 3.01413 3.14353 3.36900 3.47555 3.54612 3.74027 3.85612 3.94801 3.99194 4.09126 4.24838 4.28211 4.31706 4.35864 4.50002 4.56819 4.60212 4.71341 4.79770 4.84206 4.86780 4.95068 5.01438 5.06863 5.09142 5.17786 5.26324 5.38361 5.48746 5.56239 5.65969 5.69411 5.75868 6.01298 6.33613 6.42347 6.61389 6.80020 7.01621 7.15804 7.72700 8.68882 9.38433 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012347 B = 0.003050 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.208663 B = 9179.192671 C =10934.207347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.588 5.588 3 C 0.124 3.876 4 C 0.130 3.870 5 H 0.025 0.975 6 C -0.131 4.131 7 C 0.153 3.847 8 N -0.624 5.624 9 C -0.223 4.223 10 H 0.107 0.893 11 C -0.077 4.077 12 N -0.961 5.961 13 Si 0.967 3.033 14 H -0.267 1.267 15 H -0.302 1.302 16 H -0.279 1.279 17 C 0.558 3.442 18 O -0.575 6.575 19 C 0.037 3.963 20 C -0.104 4.104 21 C -0.086 4.086 22 C -0.008 4.008 23 C -0.230 4.230 24 C 0.070 3.930 25 N -0.328 5.328 26 N -0.463 5.463 27 H 0.456 0.544 28 C 0.104 3.896 29 C 0.083 3.917 30 N -0.456 5.456 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.007 0.993 40 H 0.243 0.757 41 H 0.145 0.855 42 H 0.171 0.829 43 H 0.206 0.794 44 H 0.220 0.780 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.871 -21.557 11.101 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.317 5.317 3 C 0.001 3.999 4 C 0.023 3.977 5 H 0.042 0.958 6 C -0.169 4.169 7 C 0.028 3.972 8 N -0.351 5.351 9 C -0.351 4.351 10 H 0.124 0.876 11 C -0.269 4.269 12 N -0.612 5.612 13 Si 0.795 3.205 14 H -0.192 1.192 15 H -0.229 1.229 16 H -0.205 1.205 17 C 0.346 3.654 18 O -0.456 6.456 19 C -0.099 4.099 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.011 4.011 23 C -0.242 4.242 24 C -0.117 4.117 25 N -0.150 5.150 26 N -0.170 5.170 27 H 0.303 0.697 28 C -0.046 4.046 29 C -0.078 4.078 30 N -0.167 5.167 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.025 0.975 40 H 0.052 0.948 41 H 0.163 0.837 42 H 0.189 0.811 43 H 0.223 0.777 44 H 0.236 0.764 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.342 -21.897 11.027 24.898 hybrid contribution -0.595 0.198 -0.964 1.149 sum -4.936 -21.699 10.063 24.423 Atomic orbital electron populations 1.22019 0.77288 1.01322 1.02431 1.47767 1.08651 1.05416 1.69872 1.21841 0.97281 0.84223 0.96569 1.22640 0.88351 0.94412 0.92276 0.95779 1.23573 0.98139 0.96235 0.99000 1.22108 0.87521 0.94574 0.92995 1.46606 1.01461 1.35354 1.51634 1.19920 0.81851 1.14977 1.18330 0.87556 1.25634 1.02122 0.99622 0.99489 1.70038 1.35427 1.25294 1.30420 0.85309 0.80559 0.76926 0.77678 1.19241 1.22926 1.20537 1.18342 0.86407 0.83995 0.76627 1.90702 1.14315 1.87605 1.52982 1.20901 0.90708 0.93481 1.04804 1.22059 1.02230 0.91621 0.96560 1.21790 0.93188 0.98760 0.97385 1.19371 0.93301 0.92737 0.95710 1.18798 0.92735 0.92405 1.20248 1.24424 1.00111 0.90143 0.97060 1.77236 0.91147 1.20992 1.25588 1.46331 1.09158 1.04714 1.56829 0.69662 1.23307 0.96685 0.88723 0.95925 1.23384 1.01556 0.86138 0.96743 1.67992 1.06758 1.31572 1.10332 0.89941 0.91754 0.92524 0.89408 0.89367 0.88912 0.90102 0.93877 0.97513 0.94825 0.83701 0.81142 0.77735 0.76368 0.79359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.73 7.21 127.77 0.92 4.65 16 2 N -0.59 -21.48 2.89 -850.06 -2.45 -23.93 16 3 C 0.12 4.60 5.26 86.38 0.45 5.06 16 4 C 0.13 5.58 4.49 45.09 0.20 5.78 16 5 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 6 C -0.13 -5.03 7.86 31.25 0.25 -4.78 16 7 C 0.15 7.62 7.45 86.44 0.64 8.26 16 8 N -0.62 -32.21 3.58 -690.85 -2.48 -34.68 16 9 C -0.22 -12.12 10.29 84.03 0.86 -11.25 16 10 H 0.11 5.30 3.77 -2.91 -0.01 5.29 16 11 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 12 N -0.96 -59.11 11.48 21.65 0.25 -58.86 16 13 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 14 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 15 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 C 0.56 20.47 7.60 86.81 0.66 21.13 16 18 O -0.58 -23.39 15.96 -3.88 -0.06 -23.45 16 19 C 0.04 1.13 6.68 41.87 0.28 1.41 16 20 C -0.10 -2.54 9.61 22.57 0.22 -2.33 16 21 C -0.09 -1.50 9.69 22.64 0.22 -1.28 16 22 C -0.01 -0.13 5.90 -19.87 -0.12 -0.24 16 23 C -0.23 -3.03 6.05 -20.33 -0.12 -3.16 16 24 C 0.07 0.94 11.45 85.54 0.98 1.92 16 25 N -0.33 -5.08 12.66 -56.41 -0.71 -5.80 16 26 N -0.46 -4.33 7.32 -56.96 -0.42 -4.74 16 27 H 0.46 1.36 8.96 -213.38 -1.91 -0.55 16 28 C 0.10 0.88 11.40 83.87 0.96 1.84 16 29 C 0.08 1.58 10.73 85.13 0.91 2.49 16 30 N -0.46 -12.22 5.94 -184.12 -1.09 -13.32 16 31 H 0.08 2.36 7.03 -2.38 -0.02 2.34 16 32 H 0.06 2.27 6.42 -2.39 -0.02 2.25 16 33 H 0.06 2.04 6.58 -2.39 -0.02 2.03 16 34 H 0.09 3.19 7.78 -2.39 -0.02 3.18 16 35 H 0.09 3.05 7.53 -2.39 -0.02 3.03 16 36 H 0.09 3.25 8.10 -2.39 -0.02 3.23 16 37 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.04 2.34 7.31 -2.39 -0.02 2.32 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.24 14.67 8.31 -92.71 -0.77 13.89 16 41 H 0.15 3.51 7.64 -2.91 -0.02 3.48 16 42 H 0.17 1.77 7.16 -2.91 -0.02 1.75 16 43 H 0.21 1.66 7.41 -2.91 -0.02 1.64 16 44 H 0.22 0.16 7.30 -2.91 -0.02 0.14 16 45 H 0.19 2.13 7.03 -2.91 -0.02 2.11 16 Total: -1.00 -80.33 370.66 1.98 -78.34 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -0.86 Total: 13.72 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 7.78 Total: 25.58 kcal Atomic # 7 Polarization: -134.43 SS G_CDS: -6.91 Total: -141.33 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.06 Total: -23.45 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -80.33 1.98 -78.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085680549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.239 kcal (2) G-P(sol) polarization free energy of solvation -80.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds