Wall clock time and date at job start Sat Apr 11 2020 06:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 120.00032 * 2 1 4 4 C 1.52999 * 109.47129 * 264.25500 * 3 2 1 5 5 H 1.09000 * 112.96299 * 310.95750 * 4 3 2 6 6 C 1.53943 * 113.76523 * 179.28311 * 4 3 2 7 7 C 1.53946 * 86.29071 * 222.08974 * 6 4 3 8 8 N 1.47579 * 113.76799 * 82.63973 * 4 3 2 9 9 C 1.36937 * 134.49584 * 318.92948 * 8 4 3 10 10 H 1.08001 * 119.99591 * 2.95225 * 9 8 4 11 11 C 1.38811 * 119.99909 * 182.95190 * 9 8 4 12 12 N 1.31618 * 120.00241 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99745 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47170 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47256 * 120.00441 * 13 11 9 16 16 H 1.48505 * 109.47192 * 240.00307 * 13 11 9 17 17 C 1.34773 * 119.99909 * 180.02562 * 2 1 3 18 18 O 1.21518 * 120.00277 * 185.08380 * 17 2 1 19 19 C 1.48162 * 120.00155 * 5.07324 * 17 2 1 20 20 C 1.39228 * 119.68791 * 174.80508 * 19 17 2 21 21 C 1.38717 * 119.18924 * 180.02562 * 20 19 17 22 22 C 1.38403 * 118.55781 * 0.02562 * 21 20 19 23 23 C 1.39263 * 119.30181 * 0.02562 * 22 21 20 24 24 N 1.39819 * 119.62269 * 179.97438 * 23 22 21 25 25 C 1.37171 * 126.49263 * 184.99475 * 24 23 22 26 26 C 1.34616 * 106.83221 * 180.02562 * 25 24 23 27 27 N 1.34149 * 108.21537 * 0.02562 * 26 25 24 28 28 C 1.30478 * 109.37763 * 359.97438 * 27 26 25 29 29 N 1.31981 * 120.75899 * 0.27398 * 23 22 21 30 30 H 1.09003 * 109.47153 * 236.93733 * 1 2 3 31 31 H 1.09000 * 109.47086 * 356.93572 * 1 2 3 32 32 H 1.09003 * 109.47468 * 116.93926 * 1 2 3 33 33 H 1.09003 * 109.46640 * 24.25474 * 3 2 1 34 34 H 1.09000 * 109.46693 * 144.25451 * 3 2 1 35 35 H 1.09004 * 113.74462 * 336.43358 * 6 4 3 36 36 H 1.09005 * 113.74389 * 107.63663 * 6 4 3 37 37 H 1.09005 * 113.77015 * 137.90330 * 7 6 4 38 38 H 1.08993 * 113.77131 * 269.19638 * 7 6 4 39 39 H 0.97002 * 120.00109 * 180.02562 * 12 11 9 40 40 H 1.07999 * 120.40661 * 0.02562 * 20 19 17 41 41 H 1.08004 * 120.71977 * 180.02562 * 21 20 19 42 42 H 1.07993 * 120.35120 * 180.02562 * 22 21 20 43 43 H 1.08003 * 126.58816 * 0.05234 * 25 24 23 44 44 H 1.07996 * 125.89165 * 180.02562 * 26 25 24 45 45 H 1.07993 * 125.72534 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5776 1.6382 -1.4352 5 1 3.0452 0.8157 -1.9765 6 6 3.3399 2.9706 -1.5517 7 6 2.4585 3.2522 -2.7821 8 7 1.4946 2.3041 -2.1847 9 6 0.1416 2.1179 -2.2848 10 1 -0.3445 1.3592 -1.6895 11 6 -0.6049 2.9045 -3.1513 12 7 -0.0124 3.8288 -3.8772 13 14 -2.4507 2.6510 -3.2873 14 1 -2.8688 1.5578 -2.3735 15 1 -3.1515 3.9054 -2.9127 16 1 -2.7989 2.2878 -4.6845 17 6 2.1389 -1.1672 -0.0005 18 8 3.3505 -1.1694 0.0927 19 6 1.4024 -2.4477 -0.1146 20 6 2.1092 -3.6423 -0.2237 21 6 1.4093 -4.8352 -0.3305 22 6 0.0259 -4.7933 -0.3250 23 6 -0.6184 -3.5637 -0.2138 24 7 -2.0157 -3.5136 -0.2081 25 6 -2.7914 -2.3823 -0.2021 26 6 -4.0745 -2.7894 -0.1975 27 7 -4.0887 -4.1309 -0.2000 28 6 -2.8626 -4.5768 -0.2066 29 7 0.0748 -2.4445 -0.1197 30 1 -0.3633 -0.5607 0.8613 31 1 -0.3633 1.0262 0.0549 32 1 -0.3634 -0.4656 -0.9161 33 1 1.5677 2.0518 0.4222 34 1 3.1015 1.1663 0.6004 35 1 3.1625 3.6519 -0.7196 36 1 4.3979 2.8519 -1.7856 37 1 2.0925 4.2776 -2.8349 38 1 2.8909 2.9061 -3.7208 39 1 -0.5341 4.3786 -4.4824 40 1 3.1892 -3.6403 -0.2253 41 1 1.9325 -5.7761 -0.4160 42 1 -0.5480 -5.7046 -0.4061 43 1 -2.4402 -1.3609 -0.2017 44 1 -4.9426 -2.1470 -0.1926 45 1 -2.5696 -5.6163 -0.2096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085684748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:15 Heat of formation + Delta-G solvation = 160.769633 kcal Electronic energy + Delta-G solvation = -30050.029466 eV Core-core repulsion = 26072.381367 eV Total energy + Delta-G solvation = -3977.648099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.55254 -40.79289 -39.18201 -37.72690 -35.25073 -34.43479 -33.09254 -32.22061 -30.48485 -29.60452 -28.61646 -27.77129 -26.44597 -24.72601 -24.35136 -23.31776 -22.65845 -21.32633 -21.21764 -19.92768 -19.08611 -18.39315 -17.38428 -16.84760 -16.55007 -16.28152 -16.04487 -15.66493 -15.22982 -14.93165 -14.58760 -14.18622 -14.08066 -13.90523 -13.85195 -13.64028 -13.48696 -13.22443 -12.89936 -12.63378 -12.49118 -12.09659 -11.47628 -11.38684 -11.12988 -11.01136 -10.99485 -10.73336 -10.51422 -10.44180 -10.35228 -10.28890 -10.06687 -9.68376 -9.46221 -9.28367 -9.07786 -8.79012 -8.69972 -8.24208 -6.84942 -5.75845 -3.06531 0.19362 0.58650 1.91813 2.14425 2.73661 2.93966 3.09596 3.36235 3.39541 3.44647 3.61037 3.79918 4.14619 4.37295 4.43255 4.45213 4.51713 4.65421 4.92157 5.08959 5.13780 5.21601 5.40004 5.42942 5.55481 5.59230 5.64470 5.72943 5.81601 5.87600 5.90237 5.98257 6.03494 6.07562 6.22279 6.37204 6.45569 6.49097 6.59758 6.70504 6.85416 6.92040 7.27023 7.31612 7.42902 7.58499 7.62700 7.75838 7.99615 8.23478 9.05145 9.72994 10.64618 11.41966 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009503 B = 0.004620 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.633396 B = 6058.660652 C = 8504.530473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.574 5.574 3 C 0.116 3.884 4 C 0.128 3.872 5 H 0.045 0.955 6 C -0.158 4.158 7 C 0.162 3.838 8 N -0.602 5.602 9 C -0.225 4.225 10 H 0.090 0.910 11 C -0.009 4.009 12 N -0.919 5.919 13 Si 0.901 3.099 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.292 1.292 17 C 0.562 3.438 18 O -0.537 6.537 19 C 0.125 3.875 20 C -0.124 4.124 21 C -0.053 4.053 22 C -0.164 4.164 23 C 0.340 3.660 24 N -0.410 5.410 25 C -0.020 4.020 26 C -0.031 4.031 27 N -0.478 5.478 28 C 0.188 3.812 29 N -0.462 5.462 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.025 0.975 39 H 0.251 0.749 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.185 0.815 44 H 0.177 0.823 45 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.531 -16.296 9.796 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.303 5.303 3 C -0.007 4.007 4 C 0.020 3.980 5 H 0.062 0.938 6 C -0.197 4.197 7 C 0.037 3.963 8 N -0.328 5.328 9 C -0.353 4.353 10 H 0.107 0.893 11 C -0.206 4.206 12 N -0.567 5.567 13 Si 0.732 3.268 14 H -0.203 1.203 15 H -0.217 1.217 16 H -0.219 1.219 17 C 0.348 3.652 18 O -0.415 6.415 19 C -0.015 4.015 20 C -0.145 4.145 21 C -0.079 4.079 22 C -0.186 4.186 23 C 0.110 3.890 24 N -0.093 5.093 25 C -0.149 4.149 26 C -0.175 4.175 27 N -0.195 5.195 28 C -0.093 4.093 29 N -0.177 5.177 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.174 0.826 41 H 0.171 0.829 42 H 0.164 0.836 43 H 0.202 0.798 44 H 0.194 0.806 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.729 -15.824 9.795 18.624 hybrid contribution -0.114 -0.432 -0.603 0.750 sum 0.615 -16.255 9.192 18.685 Atomic orbital electron populations 1.22197 0.78124 1.02533 1.01811 1.47681 1.08138 1.05545 1.68947 1.22100 0.96573 0.83268 0.98804 1.22591 0.89674 0.94462 0.91290 0.93790 1.23770 0.97457 0.97372 1.01144 1.22159 0.86314 0.96217 0.91658 1.46225 1.01086 1.34413 1.51117 1.19387 0.80652 1.15804 1.19445 0.89250 1.24791 0.97727 0.99154 0.98905 1.69836 1.34003 1.23773 1.29050 0.86217 0.85640 0.77418 0.77557 1.20301 1.21740 1.21941 1.17732 0.86438 0.82797 0.78266 1.90770 1.12724 1.86642 1.51351 1.21139 0.87679 0.95076 0.97605 1.22186 1.02897 0.91364 0.98053 1.21499 0.92790 0.99087 0.94530 1.21736 0.95880 0.97148 1.03852 1.18250 0.82903 0.90333 0.97483 1.43113 1.03285 1.08647 1.54257 1.23113 0.91164 0.92607 1.08017 1.22418 0.96259 0.91280 1.07575 1.70313 1.19832 1.11118 1.18205 1.25271 0.84076 0.93949 1.06006 1.67563 1.08442 1.28102 1.13550 0.92298 0.89980 0.91247 0.89438 0.90403 0.90675 0.92902 0.91234 0.95744 0.93839 0.82577 0.82918 0.83619 0.79819 0.80558 0.77320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.55 6.78 59.85 0.41 1.96 16 2 N -0.57 -9.88 2.89 -182.57 -0.53 -10.41 16 3 C 0.12 2.04 5.26 -4.04 -0.02 2.02 16 4 C 0.13 2.61 4.49 -66.87 -0.30 2.31 16 5 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 6 C -0.16 -2.98 7.86 -25.79 -0.20 -3.18 16 7 C 0.16 3.80 7.45 -2.84 -0.02 3.77 16 8 N -0.60 -14.80 3.58 -169.71 -0.61 -15.41 16 9 C -0.23 -5.92 10.29 -15.06 -0.16 -6.07 16 10 H 0.09 2.18 3.77 -52.49 -0.20 1.98 16 11 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 12 N -0.92 -26.95 11.48 55.49 0.64 -26.31 16 13 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 C 0.56 9.47 7.61 -12.19 -0.09 9.37 16 18 O -0.54 -9.92 15.97 5.35 0.09 -9.84 16 19 C 0.12 1.75 6.68 -83.02 -0.55 1.20 16 20 C -0.12 -1.33 9.63 -39.04 -0.38 -1.71 16 21 C -0.05 -0.40 10.16 -39.34 -0.40 -0.80 16 22 C -0.16 -1.35 9.51 -39.14 -0.37 -1.72 16 23 C 0.34 3.98 7.50 -154.52 -1.16 2.82 16 24 N -0.41 -4.89 2.98 -63.81 -0.19 -5.08 16 25 C -0.02 -0.25 11.17 -16.44 -0.18 -0.44 16 26 C -0.03 -0.39 11.85 -17.82 -0.21 -0.60 16 27 N -0.48 -6.21 11.24 -14.47 -0.16 -6.37 16 28 C 0.19 1.98 11.89 -89.57 -1.07 0.92 16 29 N -0.46 -6.35 5.50 -8.85 -0.05 -6.39 16 30 H 0.06 0.85 7.05 -51.93 -0.37 0.48 16 31 H 0.08 1.40 6.42 -51.93 -0.33 1.07 16 32 H 0.07 1.23 6.48 -51.93 -0.34 0.89 16 33 H 0.09 1.54 7.78 -51.93 -0.40 1.14 16 34 H 0.08 1.29 7.53 -51.93 -0.39 0.90 16 35 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.78 7.31 -51.93 -0.38 1.40 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.16 1.55 7.64 -52.49 -0.40 1.15 16 41 H 0.15 0.60 8.06 -52.48 -0.42 0.17 16 42 H 0.15 0.70 6.77 -52.49 -0.36 0.34 16 43 H 0.18 2.35 7.53 -52.48 -0.40 1.96 16 44 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 45 H 0.21 1.25 7.06 -52.49 -0.37 0.88 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -34.03 370.46 -10.66 -44.69 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.60 Total: 3.50 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -4.80 Total: 9.50 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -0.90 Total: -69.98 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.03 -10.66 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085684748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.463 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds