Wall clock time and date at job start Sat Apr 11 2020 06:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46494 * 120.00087 * 2 1 4 4 C 1.53004 * 109.46995 * 264.50504 * 3 2 1 5 5 H 1.08995 * 112.96722 * 292.02134 * 4 3 2 6 6 C 1.53946 * 113.77046 * 63.70286 * 4 3 2 7 7 C 1.53947 * 86.29352 * 137.90527 * 6 4 3 8 8 N 1.47580 * 113.76736 * 160.34497 * 4 3 2 9 9 C 1.36935 * 134.49833 * 41.06623 * 8 4 3 10 10 H 1.08006 * 119.99744 * 4.85600 * 9 8 4 11 11 C 1.38808 * 120.00532 * 184.85423 * 9 8 4 12 12 N 1.31619 * 120.00124 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00255 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47003 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47253 * 119.99847 * 13 11 9 16 16 H 1.48500 * 109.47238 * 239.99913 * 13 11 9 17 17 C 1.34779 * 120.00260 * 179.97438 * 2 1 3 18 18 O 1.21589 * 120.00356 * 184.39342 * 17 2 1 19 19 C 1.47516 * 119.99928 * 4.39862 * 17 2 1 20 20 C 1.36621 * 125.76794 * 173.63072 * 19 17 2 21 21 N 1.35076 * 106.79240 * 180.11434 * 20 19 17 22 22 C 1.40230 * 126.60984 * 179.90786 * 21 20 19 23 23 C 1.38816 * 120.06793 * 359.43025 * 22 21 20 24 24 C 1.38121 * 119.93767 * 180.30062 * 23 22 21 25 25 C 1.38277 * 120.06241 * 359.95770 * 24 23 22 26 26 C 1.38277 * 120.13586 * 0.04261 * 25 24 23 27 27 C 1.38130 * 120.06182 * 359.97438 * 26 25 24 28 28 N 1.40213 * 106.77566 * 359.64104 * 21 20 19 29 29 N 1.28752 * 108.38381 * 0.23008 * 28 21 20 30 30 H 1.08999 * 109.47427 * 264.04234 * 1 2 3 31 31 H 1.08992 * 109.47255 * 24.05429 * 1 2 3 32 32 H 1.09002 * 109.46764 * 144.04798 * 1 2 3 33 33 H 1.08997 * 109.47182 * 24.50646 * 3 2 1 34 34 H 1.09000 * 109.47608 * 144.50690 * 3 2 1 35 35 H 1.08995 * 113.74280 * 252.25887 * 6 4 3 36 36 H 1.09006 * 113.73787 * 23.45420 * 6 4 3 37 37 H 1.08998 * 113.76329 * 90.68948 * 7 6 4 38 38 H 1.08994 * 113.76658 * 221.98182 * 7 6 4 39 39 H 0.96998 * 120.00469 * 179.97438 * 12 11 9 40 40 H 1.07992 * 126.60276 * 0.02562 * 20 19 17 41 41 H 1.08001 * 120.03399 * 0.25739 * 23 22 21 42 42 H 1.08000 * 119.97027 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.93459 * 180.02562 * 25 24 23 44 44 H 1.07993 * 119.97376 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.03205 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5721 1.6413 -1.4359 5 1 3.3112 0.9685 -1.8708 6 6 1.3582 1.9014 -2.3463 7 6 2.1540 3.0987 -2.8969 8 7 2.8905 3.0710 -1.6156 9 6 3.5873 3.9980 -0.8873 10 1 4.1124 3.6980 0.0075 11 6 3.6188 5.3232 -1.2991 12 7 2.9785 5.6891 -2.3893 13 14 4.5698 6.5876 -0.3060 14 1 5.1973 5.9261 0.8662 15 1 5.6262 7.1924 -1.1566 16 1 3.6427 7.6492 0.1616 17 6 2.1389 -1.1672 0.0005 18 8 3.3521 -1.1687 0.0812 19 6 1.4046 -2.4429 -0.0969 20 6 1.9680 -3.6804 -0.2297 21 7 0.9514 -4.5681 -0.2849 22 6 1.0625 -5.9594 -0.4213 23 6 2.3142 -6.5502 -0.5266 24 6 2.4202 -7.9201 -0.6671 25 6 1.2810 -8.7031 -0.7021 26 6 0.0327 -8.1175 -0.5975 27 6 -0.0796 -6.7480 -0.4572 28 7 -0.2361 -3.8310 -0.1733 29 7 0.0684 -2.5847 -0.0644 30 1 -0.3634 -0.1067 1.0221 31 1 -0.3633 0.9383 -0.4188 32 1 -0.3633 -0.8319 -0.6034 33 1 1.5693 2.0509 0.4263 34 1 3.1037 1.1650 0.5966 35 1 1.1839 1.1151 -3.0807 36 1 0.4557 2.1841 -1.8042 37 1 2.7713 2.8555 -3.7617 38 1 1.5529 3.9962 -3.0422 39 1 3.0002 6.6152 -2.6769 40 1 3.0229 -3.9054 -0.2821 41 1 3.2043 -5.9391 -0.4993 42 1 3.3938 -8.3803 -0.7494 43 1 1.3663 -9.7741 -0.8116 44 1 -0.8552 -8.7315 -0.6247 45 1 -1.0548 -6.2911 -0.3759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085691624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:23 Heat of formation + Delta-G solvation = 172.750138 kcal Electronic energy + Delta-G solvation = -28506.555913 eV Core-core repulsion = 24529.427328 eV Total energy + Delta-G solvation = -3977.128585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.72248 -39.91095 -39.36000 -37.68327 -35.37090 -34.78666 -32.11309 -31.94398 -31.15411 -30.33388 -28.40773 -27.78996 -26.35407 -24.80547 -24.22434 -23.27852 -22.88916 -21.91995 -21.59886 -19.91504 -19.06147 -18.41581 -17.10033 -16.70294 -16.46032 -16.28700 -16.13952 -15.56493 -15.32147 -15.16754 -14.66692 -14.51011 -14.16442 -14.09688 -13.70643 -13.55260 -13.34346 -12.83941 -12.66272 -12.62642 -12.32852 -12.23464 -12.08231 -11.68494 -11.61832 -11.36251 -11.22321 -10.92281 -10.66640 -10.60684 -10.39255 -9.97611 -9.79097 -9.73592 -9.68152 -9.65235 -9.48464 -8.98893 -8.71693 -8.26434 -6.79471 -5.68941 -3.02173 0.00826 0.67107 1.33925 1.54922 1.58918 3.08316 3.11855 3.32396 3.43437 3.49231 3.51505 3.88400 3.93728 4.20502 4.38628 4.43274 4.52837 4.58557 4.69396 4.70737 4.90045 5.01244 5.24938 5.25105 5.34841 5.46218 5.57206 5.66492 5.67238 5.72108 5.77683 5.83959 5.91133 5.97101 6.03060 6.17336 6.28373 6.36008 6.38055 6.53706 6.69571 6.78345 6.88700 7.32773 7.50408 7.54223 7.66385 7.67854 8.06477 8.28046 9.11983 9.78448 10.68648 11.47348 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028611 B = 0.002036 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.417347 B =13748.667556 C =14023.569915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.587 5.587 3 C 0.118 3.882 4 C 0.131 3.869 5 H 0.047 0.953 6 C -0.157 4.157 7 C 0.155 3.845 8 N -0.602 5.602 9 C -0.218 4.218 10 H 0.079 0.921 11 C -0.009 4.009 12 N -0.921 5.921 13 Si 0.910 3.090 14 H -0.279 1.279 15 H -0.292 1.292 16 H -0.291 1.291 17 C 0.595 3.405 18 O -0.536 6.536 19 C -0.080 4.080 20 C 0.090 3.910 21 N -0.313 5.313 22 C 0.136 3.864 23 C -0.125 4.125 24 C -0.095 4.095 25 C -0.116 4.116 26 C -0.099 4.099 27 C -0.105 4.105 28 N -0.063 5.063 29 N -0.192 5.192 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.022 0.978 38 H 0.078 0.922 39 H 0.252 0.748 40 H 0.207 0.793 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 -30.231 3.418 31.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.318 5.318 3 C -0.005 4.005 4 C 0.023 3.977 5 H 0.065 0.935 6 C -0.195 4.195 7 C 0.030 3.970 8 N -0.329 5.329 9 C -0.346 4.346 10 H 0.097 0.903 11 C -0.205 4.205 12 N -0.568 5.568 13 Si 0.740 3.260 14 H -0.204 1.204 15 H -0.219 1.219 16 H -0.218 1.218 17 C 0.380 3.620 18 O -0.413 6.413 19 C -0.218 4.218 20 C -0.063 4.063 21 N -0.091 5.091 22 C 0.044 3.956 23 C -0.146 4.146 24 C -0.114 4.114 25 C -0.135 4.135 26 C -0.117 4.117 27 C -0.125 4.125 28 N -0.041 5.041 29 N -0.066 5.066 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.224 0.776 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.907 -29.863 3.593 31.100 hybrid contribution 1.665 0.717 0.350 1.846 sum -6.242 -29.146 3.943 30.067 Atomic orbital electron populations 1.22239 0.78576 1.04047 1.02302 1.47630 1.07659 1.05652 1.70885 1.21884 0.96998 0.82425 0.99211 1.22528 0.94119 0.88315 0.92777 0.93518 1.23748 0.97583 0.99256 0.98956 1.22310 0.91322 0.95257 0.88109 1.46063 1.62624 1.03301 1.20866 1.19073 1.23804 0.87175 1.04565 0.90317 1.24773 1.00930 0.96873 0.97971 1.69832 1.46385 1.16381 1.24225 0.86076 0.79123 0.81623 0.79151 1.20435 1.21868 1.21775 1.16747 0.86050 0.81692 0.77490 1.90821 1.12644 1.86636 1.51184 1.21612 0.89695 0.95364 1.15144 1.23362 0.96374 0.88342 0.98201 1.47624 1.06874 1.06119 1.48531 1.17648 0.95646 0.77960 1.04332 1.21013 0.95334 0.96153 1.02100 1.21064 0.99558 0.92299 0.98471 1.21372 0.92356 1.00657 0.99098 1.21139 0.98366 0.93703 0.98501 1.21003 0.97805 0.93719 0.99969 1.82067 1.03271 0.96646 1.22149 1.74810 1.12835 1.08982 1.09925 0.92733 0.90706 0.88918 0.89389 0.90479 0.93486 0.90824 0.95982 0.90398 0.93826 0.77613 0.84596 0.84486 0.84998 0.84580 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 9.30 59.84 0.56 1.52 16 2 N -0.59 -9.54 2.75 -182.83 -0.50 -10.04 16 3 C 0.12 2.24 5.28 -4.04 -0.02 2.22 16 4 C 0.13 2.81 4.55 -66.86 -0.30 2.51 16 5 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 6 C -0.16 -3.10 7.28 -25.79 -0.19 -3.29 16 7 C 0.16 3.78 7.65 -2.84 -0.02 3.76 16 8 N -0.60 -15.75 3.58 -169.72 -0.61 -16.36 16 9 C -0.22 -6.21 10.51 -15.06 -0.16 -6.37 16 10 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 12 N -0.92 -27.71 11.32 55.49 0.63 -27.09 16 13 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 C 0.60 9.82 7.63 -12.48 -0.10 9.72 16 18 O -0.54 -10.25 16.51 5.29 0.09 -10.16 16 19 C -0.08 -1.11 6.70 -83.54 -0.56 -1.67 16 20 C 0.09 0.99 10.61 -16.71 -0.18 0.82 16 21 N -0.31 -3.33 3.82 -10.43 -0.04 -3.37 16 22 C 0.14 1.13 6.69 -83.58 -0.56 0.57 16 23 C -0.13 -0.78 9.47 -39.41 -0.37 -1.15 16 24 C -0.10 -0.44 10.04 -39.61 -0.40 -0.83 16 25 C -0.12 -0.48 10.04 -39.55 -0.40 -0.88 16 26 C -0.10 -0.48 10.04 -39.61 -0.40 -0.88 16 27 C -0.11 -0.75 9.68 -39.40 -0.38 -1.13 16 28 N -0.06 -0.79 13.12 60.35 0.79 0.00 16 29 N -0.19 -2.59 8.79 32.85 0.29 -2.30 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.97 6.57 -51.93 -0.34 0.63 16 32 H 0.09 1.22 5.24 -51.93 -0.27 0.95 16 33 H 0.09 1.68 8.03 -51.93 -0.42 1.26 16 34 H 0.08 1.57 7.53 -51.93 -0.39 1.18 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.37 6.81 -51.93 -0.35 1.02 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 2.07 6.97 -51.93 -0.36 1.70 16 39 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.21 1.65 7.13 -52.49 -0.37 1.28 16 41 H 0.14 0.64 6.81 -52.49 -0.36 0.29 16 42 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 43 H 0.13 0.25 8.06 -52.49 -0.42 -0.18 16 44 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 45 H 0.14 1.01 7.73 -52.49 -0.41 0.60 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -34.76 377.45 -8.04 -42.80 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.78 Total: -1.28 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -3.57 Total: 4.55 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.56 Total: -59.16 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.76 -8.04 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085691624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.551 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds