Wall clock time and date at job start Sat Apr 11 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00344 * 2 1 4 4 C 1.52999 * 109.47680 * 276.21857 * 3 2 1 5 5 H 1.08998 * 112.96420 * 55.25622 * 4 3 2 6 6 C 1.53940 * 113.76832 * 186.93958 * 4 3 2 7 7 C 1.53947 * 86.29156 * 137.90759 * 6 4 3 8 8 N 1.47577 * 113.76486 * 283.43299 * 4 3 2 9 9 C 1.36936 * 134.49487 * 41.05907 * 8 4 3 10 10 H 1.07998 * 120.00317 * 3.79794 * 9 8 4 11 11 C 1.38817 * 120.00133 * 183.80435 * 9 8 4 12 12 N 1.31617 * 119.99684 * 342.42625 * 11 9 8 13 13 Si 1.86803 * 120.00077 * 162.43239 * 11 9 8 14 14 H 1.48494 * 109.47149 * 358.68283 * 13 11 9 15 15 H 1.48501 * 109.47067 * 118.68454 * 13 11 9 16 16 H 1.48501 * 109.46749 * 238.68301 * 13 11 9 17 17 C 1.34777 * 120.00159 * 180.02562 * 2 1 3 18 18 O 1.21618 * 119.99864 * 7.62110 * 17 2 1 19 19 C 1.47316 * 120.00518 * 187.62619 * 17 2 1 20 20 C 1.37921 * 126.79982 * 334.16307 * 19 17 2 21 21 N 1.34199 * 107.88993 * 179.97438 * 20 19 17 22 22 H 0.96997 * 125.16131 * 180.02562 * 21 20 19 23 23 N 1.39771 * 109.66919 * 359.78127 * 21 20 19 24 24 C 1.31380 * 109.06719 * 0.37724 * 23 21 20 25 25 C 1.48273 * 126.50934 * 179.91014 * 24 23 21 26 26 C 1.39819 * 120.90430 * 314.41797 * 25 24 23 27 27 C 1.37968 * 119.01105 * 180.25574 * 26 25 24 28 28 N 1.31930 * 120.88403 * 359.42709 * 27 26 25 29 29 C 1.31930 * 122.01723 * 0.59453 * 28 27 26 30 30 C 1.37965 * 120.88345 * 359.69655 * 29 28 27 31 31 H 1.09000 * 109.46469 * 274.72591 * 1 2 3 32 32 H 1.08998 * 109.46729 * 34.71958 * 1 2 3 33 33 H 1.08999 * 109.47026 * 154.72903 * 1 2 3 34 34 H 1.09005 * 109.46452 * 36.21622 * 3 2 1 35 35 H 1.09002 * 109.47251 * 156.21062 * 3 2 1 36 36 H 1.08998 * 113.74252 * 252.25128 * 6 4 3 37 37 H 1.08998 * 113.74805 * 23.45002 * 6 4 3 38 38 H 1.08995 * 113.77518 * 90.68998 * 7 6 4 39 39 H 1.09002 * 113.77049 * 221.98564 * 7 6 4 40 40 H 0.97005 * 119.99637 * 180.02562 * 12 11 9 41 41 H 1.07997 * 126.05560 * 359.97438 * 20 19 17 42 42 H 1.07998 * 120.49182 * 359.97438 * 26 25 24 43 43 H 1.07996 * 119.55594 * 179.72428 * 27 26 25 44 44 H 1.07995 * 119.55506 * 179.72082 * 29 28 27 45 45 H 1.08003 * 120.49140 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3174 1.7886 -1.4339 5 1 1.3532 1.8864 -1.9328 6 6 3.2155 3.0313 -1.5703 7 6 3.7795 2.3614 -2.8365 8 7 3.3371 1.0871 -2.2376 9 6 3.7194 -0.2208 -2.3733 10 1 3.1810 -0.9977 -1.8511 11 6 4.7991 -0.5480 -3.1822 12 7 5.2367 0.3134 -4.0758 13 14 5.6307 -2.2110 -3.0023 14 1 4.9738 -2.9777 -1.9133 15 1 5.5140 -2.9633 -4.2773 16 1 7.0653 -2.0140 -2.6733 17 6 2.1389 -1.1672 -0.0005 18 8 1.5389 -2.2157 -0.1407 19 6 3.6023 -1.1730 0.1688 20 6 4.4746 -0.1523 -0.1469 21 7 5.7153 -0.5604 0.1612 22 1 6.5221 -0.0356 0.0403 23 7 5.6679 -1.8541 0.6880 24 6 4.4200 -2.2644 0.7067 25 6 3.9307 -3.5792 1.1869 26 6 4.5753 -4.7637 0.8178 27 6 4.0836 -5.9660 1.2829 28 7 3.0284 -6.0057 2.0737 29 6 2.3913 -4.9118 2.4453 30 6 2.8126 -3.6683 2.0213 31 1 -0.3632 0.0847 1.0242 32 1 -0.3633 0.8447 -0.5853 33 1 -0.3633 -0.9293 -0.4387 34 1 1.6611 1.9979 0.6072 35 1 3.1936 1.1131 0.4145 36 1 2.6651 3.9510 -1.7686 37 1 3.9437 3.1371 -0.7662 38 1 3.2457 2.6268 -3.7489 39 1 4.8614 2.4500 -2.9356 40 1 5.9910 0.0846 -4.6413 41 1 4.2066 0.8056 -0.5675 42 1 5.4424 -4.7383 0.1745 43 1 4.5720 -6.8866 0.9996 44 1 1.5288 -4.9908 3.0904 45 1 2.2861 -2.7769 2.3291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085695245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:25 Heat of formation + Delta-G solvation = 157.646608 kcal Electronic energy + Delta-G solvation = -31727.049030 eV Core-core repulsion = 27749.265507 eV Total energy + Delta-G solvation = -3977.783523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.40635 -40.87445 -40.28153 -39.44340 -36.19757 -34.68194 -34.38182 -32.27998 -31.87304 -31.31697 -30.10389 -29.18518 -27.42461 -25.39241 -25.19018 -24.48791 -24.25436 -22.81568 -21.63021 -20.95561 -20.41639 -18.90368 -18.48208 -17.63721 -17.30839 -17.09410 -16.97887 -16.64007 -16.61213 -16.21041 -15.85390 -15.38461 -15.28874 -15.07972 -14.70046 -14.58051 -14.53138 -14.22810 -13.85797 -13.71430 -13.44539 -13.11157 -12.99607 -12.98556 -12.74246 -12.66794 -12.36814 -12.24340 -11.94286 -11.72123 -11.53789 -11.44442 -11.16214 -10.79570 -10.69956 -10.56590 -10.11897 -9.94764 -9.47136 -9.28878 -8.73703 -8.18086 -5.30688 -0.05456 0.19849 0.91405 1.25106 1.28731 1.31887 1.47115 1.95986 2.27073 2.34335 2.51685 2.87948 3.15258 3.29940 3.43080 3.55160 3.84759 3.94913 4.05607 4.11263 4.16340 4.23688 4.26114 4.32349 4.55484 4.59443 4.64622 4.70910 4.74883 4.82472 4.84327 4.85781 4.98558 5.00410 5.04059 5.14331 5.18356 5.30871 5.36772 5.53249 5.61633 5.69336 5.70545 5.80621 5.85486 6.47889 6.55409 6.72929 6.84081 6.95257 7.45311 7.48961 8.43037 8.97289 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012274 B = 0.005830 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.772995 B = 4801.300773 C = 6114.267012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.612 5.612 3 C 0.086 3.914 4 C 0.113 3.887 5 H 0.055 0.945 6 C -0.126 4.126 7 C 0.142 3.858 8 N -0.625 5.625 9 C -0.200 4.200 10 H 0.090 0.910 11 C -0.017 4.017 12 N -0.910 5.910 13 Si 0.911 3.089 14 H -0.271 1.271 15 H -0.311 1.311 16 H -0.286 1.286 17 C 0.601 3.399 18 O -0.594 6.594 19 C -0.339 4.339 20 C 0.183 3.817 21 N -0.476 5.476 22 H 0.447 0.553 23 N -0.321 5.321 24 C 0.140 3.860 25 C 0.026 3.974 26 C -0.167 4.167 27 C 0.097 3.903 28 N -0.498 5.498 29 C 0.098 3.902 30 C -0.129 4.129 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.016 0.984 39 H 0.045 0.955 40 H 0.252 0.748 41 H 0.236 0.764 42 H 0.126 0.874 43 H 0.186 0.814 44 H 0.188 0.812 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 5.881 12.421 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.343 5.343 3 C -0.037 4.037 4 C 0.007 3.993 5 H 0.073 0.927 6 C -0.164 4.164 7 C 0.017 3.983 8 N -0.352 5.352 9 C -0.328 4.328 10 H 0.107 0.893 11 C -0.216 4.216 12 N -0.556 5.556 13 Si 0.742 3.258 14 H -0.196 1.196 15 H -0.239 1.239 16 H -0.213 1.213 17 C 0.393 3.607 18 O -0.476 6.476 19 C -0.354 4.354 20 C 0.034 3.966 21 N -0.183 5.183 22 H 0.292 0.708 23 N -0.143 5.143 24 C -0.028 4.028 25 C 0.016 3.984 26 C -0.188 4.188 27 C -0.060 4.060 28 N -0.208 5.208 29 C -0.058 4.058 30 C -0.150 4.150 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.034 0.966 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.251 0.749 42 H 0.144 0.856 43 H 0.203 0.797 44 H 0.205 0.795 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.810 4.031 12.788 13.939 hybrid contribution 0.600 0.038 -1.985 2.074 sum -3.211 4.069 10.803 11.982 Atomic orbital electron populations 1.21664 0.78385 1.02810 1.02524 1.47575 1.07293 1.05842 1.73634 1.22681 0.99168 0.84860 0.96995 1.23049 0.93427 0.90923 0.91932 0.92739 1.23584 0.98605 0.96162 0.98073 1.22328 0.98336 0.83565 0.94053 1.47330 1.38265 1.01909 1.47711 1.19742 1.06836 0.84401 1.21779 0.89307 1.24949 1.01093 0.97984 0.97555 1.70010 1.27740 1.36226 1.21619 0.86001 0.79457 0.83540 0.76784 1.19600 1.23933 1.21291 1.17263 0.85810 0.83244 0.74376 1.90678 1.70711 1.32997 1.53236 1.20776 0.93905 0.96076 1.24642 1.25059 0.83271 1.01263 0.86965 1.45916 1.09105 1.12254 1.51018 0.70769 1.77025 1.18436 0.95945 1.22848 1.21663 0.90362 0.93195 0.97624 1.18331 0.95051 0.89852 0.95179 1.22288 1.01527 0.93198 1.01813 1.22998 0.92471 0.97618 0.92867 1.67685 1.08210 1.32612 1.12293 1.23061 0.98707 0.86620 0.97395 1.22082 0.95197 1.00396 0.97302 0.90788 0.89582 0.93108 0.86071 0.88611 0.88619 0.88067 0.96634 0.93636 0.93845 0.74948 0.85581 0.79727 0.79479 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.23 10.57 127.77 1.35 3.58 16 2 N -0.61 -19.12 2.88 -850.79 -2.45 -21.57 16 3 C 0.09 2.13 5.06 86.38 0.44 2.57 16 4 C 0.11 3.24 4.41 45.09 0.20 3.44 16 5 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 6 C -0.13 -2.94 7.53 31.25 0.24 -2.70 16 7 C 0.14 5.18 7.48 86.48 0.65 5.83 16 8 N -0.63 -24.95 2.32 -694.18 -1.61 -26.56 16 9 C -0.20 -9.64 6.04 84.03 0.51 -9.13 16 10 H 0.09 4.65 3.82 -2.91 -0.01 4.64 16 11 C -0.02 -0.91 5.35 84.86 0.45 -0.46 16 12 N -0.91 -49.15 11.74 21.65 0.25 -48.89 16 13 Si 0.91 46.28 28.77 68.60 1.97 48.26 16 14 H -0.27 -14.37 6.53 99.48 0.65 -13.72 16 15 H -0.31 -16.56 7.11 99.48 0.71 -15.85 16 16 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 17 C 0.60 24.10 5.19 86.63 0.45 24.55 16 18 O -0.59 -27.53 14.67 -4.09 -0.06 -27.59 16 19 C -0.34 -13.59 4.47 -18.78 -0.08 -13.68 16 20 C 0.18 6.64 5.77 84.26 0.49 7.13 16 21 N -0.48 -16.84 6.75 -56.43 -0.38 -17.22 16 22 H 0.45 13.16 8.96 -213.54 -1.91 11.25 16 23 N -0.32 -12.79 12.66 -44.53 -0.56 -13.35 16 24 C 0.14 5.78 6.35 44.07 0.28 6.06 16 25 C 0.03 1.01 5.48 -19.85 -0.11 0.90 16 26 C -0.17 -6.01 9.89 22.59 0.22 -5.79 16 27 C 0.10 2.97 11.17 84.61 0.95 3.91 16 28 N -0.50 -15.67 10.35 -196.14 -2.03 -17.70 16 29 C 0.10 2.92 11.17 84.61 0.95 3.86 16 30 C -0.13 -4.36 8.29 22.58 0.19 -4.18 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.74 8.11 -2.39 -0.02 1.72 16 33 H 0.05 1.56 7.20 -2.39 -0.02 1.54 16 34 H 0.12 1.93 8.12 -2.38 -0.02 1.91 16 35 H 0.10 2.50 3.91 -2.39 -0.01 2.49 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.94 8.04 -2.39 -0.02 1.92 16 38 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.05 1.86 7.47 -2.39 -0.02 1.84 16 40 H 0.25 13.57 8.31 -92.70 -0.77 12.80 16 41 H 0.24 7.99 2.68 -2.91 -0.01 7.98 16 42 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 43 H 0.19 4.28 8.06 -2.91 -0.02 4.26 16 44 H 0.19 4.09 8.06 -2.91 -0.02 4.06 16 45 H 0.13 4.34 7.71 -2.91 -0.02 4.32 16 Total: -1.00 -72.72 356.18 1.38 -71.34 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -0.91 Total: 27.39 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 7.15 Total: 25.89 kcal Atomic # 7 Polarization: -138.51 SS G_CDS: -6.77 Total: -145.29 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.06 Total: -27.59 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.97 Total: 48.26 kcal Total: -72.72 1.38 -71.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085695245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.984 kcal (2) G-P(sol) polarization free energy of solvation -72.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds