Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 119.99640 * 2 1 4 4 C 1.53000 * 109.46955 * 275.58883 * 3 2 1 5 5 H 1.08997 * 112.96353 * 67.20169 * 4 3 2 6 6 C 1.53946 * 113.76955 * 295.52444 * 4 3 2 7 7 C 1.53945 * 86.28942 * 222.09538 * 6 4 3 8 8 N 1.47575 * 113.76721 * 198.88163 * 4 3 2 9 9 C 1.36939 * 134.49385 * 318.93257 * 8 4 3 10 10 H 1.07996 * 120.00220 * 6.08634 * 9 8 4 11 11 C 1.38819 * 120.00048 * 186.08948 * 9 8 4 12 12 N 1.31618 * 119.99778 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99903 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47306 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46825 * 120.00472 * 13 11 9 16 16 H 1.48509 * 109.47210 * 239.99992 * 13 11 9 17 17 C 1.34776 * 119.99776 * 179.97438 * 2 1 3 18 18 O 1.21616 * 119.99559 * 185.15043 * 17 2 1 19 19 C 1.47312 * 120.00188 * 5.14936 * 17 2 1 20 20 C 1.37912 * 126.81032 * 321.97713 * 19 17 2 21 21 N 1.34190 * 107.89571 * 179.76062 * 20 19 17 22 22 H 0.97001 * 125.16877 * 180.28070 * 21 20 19 23 23 N 1.39779 * 109.66660 * 0.24181 * 21 20 19 24 24 C 1.31367 * 109.06990 * 0.02562 * 23 21 20 25 25 C 1.48272 * 126.51078 * 180.02562 * 24 23 21 26 26 C 1.39805 * 120.90820 * 144.69807 * 25 24 23 27 27 C 1.37969 * 119.01204 * 179.72944 * 26 25 24 28 28 N 1.31933 * 120.88588 * 0.55098 * 27 26 25 29 29 C 1.31927 * 122.01588 * 359.71762 * 28 27 26 30 30 C 1.37972 * 120.88294 * 359.97438 * 29 28 27 31 31 H 1.08990 * 109.47532 * 264.62458 * 1 2 3 32 32 H 1.08999 * 109.47033 * 24.63009 * 1 2 3 33 33 H 1.09006 * 109.46738 * 144.62147 * 1 2 3 34 34 H 1.09002 * 109.47269 * 35.59041 * 3 2 1 35 35 H 1.09007 * 109.46812 * 155.58976 * 3 2 1 36 36 H 1.09009 * 113.74318 * 336.43627 * 6 4 3 37 37 H 1.08999 * 113.74293 * 107.63959 * 6 4 3 38 38 H 1.09002 * 113.77036 * 137.91094 * 7 6 4 39 39 H 1.09006 * 113.76197 * 269.19040 * 7 6 4 40 40 H 0.97003 * 119.99912 * 179.97438 * 12 11 9 41 41 H 1.08003 * 126.04867 * 0.02562 * 20 19 17 42 42 H 1.08001 * 120.49523 * 359.96925 * 26 25 24 43 43 H 1.08007 * 119.55820 * 180.29466 * 27 26 25 44 44 H 1.07991 * 119.56112 * 179.97438 * 29 28 27 45 45 H 1.08001 * 120.49051 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3308 1.7807 -1.4357 5 1 1.3761 2.0721 -1.8736 6 6 3.1774 0.8698 -2.3431 7 6 3.8017 2.1655 -2.8921 8 7 3.3976 2.7849 -1.6124 9 6 3.8361 3.8578 -0.8831 10 1 3.4225 4.0507 0.0958 11 6 4.8121 4.6975 -1.4019 12 7 5.3158 4.4628 -2.5951 13 14 5.4097 6.1614 -0.4073 14 1 4.6905 6.2045 0.8911 15 1 6.8682 6.0300 -0.1607 16 1 5.1461 7.4132 -1.1616 17 6 2.1389 -1.1672 0.0005 18 8 3.3514 -1.1693 0.0951 19 6 1.4068 -2.4404 -0.1134 20 6 0.1915 -2.7491 0.4609 21 7 -0.1249 -4.0042 0.1069 22 1 -0.9324 -4.4724 0.3709 23 7 0.8854 -4.5341 -0.7007 24 6 1.8275 -3.6320 -0.8568 25 6 3.0759 -3.7870 -1.6417 26 6 3.6197 -2.7089 -2.3463 27 6 4.7860 -2.8954 -3.0593 28 7 5.3800 -4.0730 -3.0901 29 6 4.8972 -5.1170 -2.4439 30 6 3.7386 -5.0166 -1.7015 31 1 -0.3634 -0.0963 1.0230 32 1 -0.3633 0.9342 -0.4283 33 1 -0.3633 -0.8380 -0.5950 34 1 1.6554 2.0013 0.5981 35 1 3.1896 1.1155 0.4247 36 1 3.8813 0.2400 -1.7988 37 1 2.5927 0.3167 -3.0780 38 1 4.8811 2.1080 -3.0323 39 1 3.2811 2.5704 -3.7600 40 1 5.9975 5.0497 -2.9578 41 1 -0.4026 -2.0948 1.0817 42 1 3.1361 -1.7433 -2.3296 43 1 5.2164 -2.0673 -3.6029 44 1 5.4157 -6.0628 -2.4968 45 1 3.3491 -5.8752 -1.1747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085695246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = 146.700526 kcal Electronic energy + Delta-G solvation = -29982.805278 eV Core-core repulsion = 26004.547096 eV Total energy + Delta-G solvation = -3978.258181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.55066 -39.80209 -39.39529 -37.55024 -35.25950 -33.75974 -32.14747 -31.34426 -30.84429 -30.68745 -28.21575 -27.78686 -26.56462 -24.44847 -23.65185 -23.39538 -22.98574 -21.75516 -20.65401 -19.66658 -18.99044 -17.89067 -16.84884 -16.71172 -16.42977 -16.10882 -15.80304 -15.72273 -15.32725 -14.84552 -14.65508 -14.29815 -13.98397 -13.73222 -13.58834 -13.57551 -13.36684 -13.22490 -12.78108 -12.45964 -12.29940 -11.93666 -11.73401 -11.37093 -11.34056 -10.99928 -10.82390 -10.66262 -10.63731 -10.39226 -9.87986 -9.77180 -9.64635 -9.48752 -9.45095 -9.29796 -9.08811 -8.87219 -8.74377 -8.32451 -6.80079 -5.71239 -3.02688 0.79007 1.21790 1.32868 2.15284 2.31903 3.02545 3.33333 3.42630 3.47586 3.50359 3.88547 3.96479 4.28542 4.50971 4.51926 4.71864 4.81179 4.99003 5.05318 5.11108 5.12050 5.22913 5.23383 5.29610 5.49376 5.57432 5.58990 5.63842 5.70857 5.83881 5.91687 5.97773 6.10614 6.13989 6.23992 6.38989 6.55648 6.69716 6.71641 6.73986 6.78054 6.83154 7.12584 7.32901 7.49558 7.60978 7.65782 8.01402 8.04169 8.40941 9.10112 9.77150 10.67781 11.46618 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.003528 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.614582 B = 7934.623568 C = 9549.208205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.605 5.605 3 C 0.116 3.884 4 C 0.129 3.871 5 H 0.040 0.960 6 C -0.162 4.162 7 C 0.166 3.834 8 N -0.599 5.599 9 C -0.222 4.222 10 H 0.078 0.922 11 C -0.006 4.006 12 N -0.918 5.918 13 Si 0.908 3.092 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.586 3.414 18 O -0.519 6.519 19 C -0.262 4.262 20 C 0.097 3.903 21 N -0.465 5.465 22 H 0.444 0.556 23 N -0.275 5.275 24 C 0.163 3.837 25 C 0.025 3.975 26 C -0.121 4.121 27 C 0.105 3.895 28 N -0.479 5.479 29 C 0.091 3.909 30 C -0.147 4.147 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.026 0.974 40 H 0.252 0.748 41 H 0.192 0.808 42 H 0.141 0.859 43 H 0.163 0.837 44 H 0.157 0.843 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.258 -18.944 4.375 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.338 5.338 3 C -0.007 4.007 4 C 0.020 3.980 5 H 0.057 0.943 6 C -0.201 4.201 7 C 0.041 3.959 8 N -0.326 5.326 9 C -0.350 4.350 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.565 5.565 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.219 1.219 17 C 0.373 3.627 18 O -0.395 6.395 19 C -0.277 4.277 20 C -0.052 4.052 21 N -0.171 5.171 22 H 0.289 0.711 23 N -0.096 5.096 24 C -0.006 4.006 25 C 0.015 3.985 26 C -0.142 4.142 27 C -0.052 4.052 28 N -0.188 5.188 29 C -0.065 4.065 30 C -0.168 4.168 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.209 0.791 42 H 0.159 0.841 43 H 0.181 0.819 44 H 0.174 0.826 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.027 -19.886 3.741 24.066 hybrid contribution -1.086 1.767 1.467 2.540 sum -14.114 -18.120 5.207 23.551 Atomic orbital electron populations 1.21963 0.80624 1.03669 1.00787 1.47649 1.06432 1.06254 1.73479 1.21860 0.97980 0.82088 0.98818 1.22497 0.92870 0.89746 0.92845 0.94253 1.23887 0.99575 0.97838 0.98758 1.22121 0.99340 0.86160 0.88291 1.45991 1.33320 1.31454 1.21788 1.19011 1.17217 1.01257 0.97519 0.90378 1.24782 0.99907 0.98928 0.96644 1.69842 1.30877 1.39228 1.16563 0.86114 0.78471 0.82605 0.78972 1.20520 1.21731 1.21854 1.17142 0.86701 0.82051 0.76794 1.90848 1.13151 1.86727 1.48741 1.21379 0.97966 0.97079 1.11285 1.23215 0.95848 0.87603 0.98485 1.45941 1.19730 1.11409 1.40046 0.71138 1.77312 0.98400 1.20790 1.13138 1.21615 0.93201 0.89905 0.95861 1.17939 0.91130 0.94276 0.95198 1.22310 0.97047 0.99101 0.95729 1.22763 0.91627 0.94777 0.96014 1.67644 1.32417 0.99849 1.18902 1.22634 0.93128 0.97566 0.93211 1.22125 0.96880 0.97136 1.00652 0.92996 0.90446 0.91343 0.91436 0.88553 0.89587 0.93897 0.91606 0.95605 0.93748 0.79138 0.84085 0.81937 0.82618 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 9.07 59.85 0.54 1.18 16 2 N -0.60 -8.22 2.78 -182.89 -0.51 -8.73 16 3 C 0.12 1.99 5.42 -4.04 -0.02 1.97 16 4 C 0.13 2.54 4.58 -66.87 -0.31 2.24 16 5 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.16 -3.16 6.36 -25.79 -0.16 -3.32 16 7 C 0.17 3.98 7.38 -2.85 -0.02 3.96 16 8 N -0.60 -15.16 3.58 -169.73 -0.61 -15.77 16 9 C -0.22 -6.16 10.51 -15.06 -0.16 -6.32 16 10 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 11 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 12 N -0.92 -27.52 11.57 55.49 0.64 -26.88 16 13 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 17 C 0.59 8.83 5.89 -12.57 -0.07 8.76 16 18 O -0.52 -9.91 13.68 5.26 0.07 -9.84 16 19 C -0.26 -3.22 5.51 -102.95 -0.57 -3.79 16 20 C 0.10 0.75 9.73 -16.64 -0.16 0.59 16 21 N -0.46 -3.38 7.20 30.81 0.22 -3.16 16 22 H 0.44 1.44 8.96 -182.84 -1.64 -0.20 16 23 N -0.27 -3.10 12.65 34.57 0.44 -2.66 16 24 C 0.16 2.13 6.98 -80.56 -0.56 1.57 16 25 C 0.02 0.34 5.75 -104.60 -0.60 -0.26 16 26 C -0.12 -1.77 8.37 -39.09 -0.33 -2.10 16 27 C 0.10 1.50 11.17 -17.61 -0.20 1.31 16 28 N -0.48 -6.85 10.35 -13.34 -0.14 -6.99 16 29 C 0.09 1.10 11.17 -17.61 -0.20 0.90 16 30 C -0.15 -1.77 9.88 -39.09 -0.39 -2.16 16 31 H 0.05 0.32 7.36 -51.93 -0.38 -0.06 16 32 H 0.08 0.67 8.03 -51.93 -0.42 0.25 16 33 H 0.07 0.50 5.90 -51.93 -0.31 0.20 16 34 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 35 H 0.10 1.98 7.20 -51.92 -0.37 1.61 16 36 H 0.09 1.78 6.31 -51.92 -0.33 1.45 16 37 H 0.04 0.73 7.87 -51.93 -0.41 0.32 16 38 H 0.07 1.74 7.47 -51.93 -0.39 1.35 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.19 0.74 6.32 -52.48 -0.33 0.41 16 42 H 0.14 2.18 4.97 -52.49 -0.26 1.92 16 43 H 0.16 2.11 8.06 -52.48 -0.42 1.69 16 44 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 45 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -36.54 371.05 -9.53 -46.06 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.92 Total: 0.85 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -3.30 Total: 4.26 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: 0.05 Total: -64.19 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.54 -9.53 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085695246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.764 kcal (2) G-P(sol) polarization free energy of solvation -36.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds