Wall clock time and date at job start Sat Apr 11 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00017 * 2 1 4 4 C 1.53006 * 109.46743 * 277.85989 * 3 2 1 5 5 H 1.08991 * 112.96516 * 51.04485 * 4 3 2 6 6 C 1.53947 * 113.76817 * 182.72576 * 4 3 2 7 7 C 1.53947 * 86.28998 * 137.90658 * 6 4 3 8 8 N 1.47579 * 86.11781 * 336.39399 * 7 6 4 9 9 C 1.36939 * 134.49331 * 204.64117 * 8 7 6 10 10 H 1.08001 * 120.00134 * 60.71280 * 9 8 7 11 11 C 1.38815 * 120.00106 * 240.70990 * 9 8 7 12 12 N 1.31614 * 120.00017 * 186.28759 * 11 9 8 13 13 Si 1.86801 * 119.99801 * 6.29037 * 11 9 8 14 14 H 1.48496 * 109.47272 * 94.49456 * 13 11 9 15 15 H 1.48494 * 109.46968 * 214.49347 * 13 11 9 16 16 H 1.48503 * 109.47069 * 334.49195 * 13 11 9 17 17 C 1.34781 * 119.99863 * 179.97438 * 2 1 3 18 18 O 1.21551 * 120.00008 * 183.95399 * 17 2 1 19 19 C 1.47864 * 120.00038 * 3.94962 * 17 2 1 20 20 C 1.39659 * 120.08622 * 330.54375 * 19 17 2 21 21 C 1.38015 * 120.09741 * 180.02562 * 20 19 17 22 22 C 1.38164 * 120.26825 * 0.02562 * 21 20 19 23 23 C 1.39407 * 120.17632 * 359.97438 * 22 21 20 24 24 C 1.48417 * 120.05064 * 179.97438 * 23 22 21 25 25 N 1.33978 * 125.65187 * 0.02562 * 24 23 22 26 26 C 1.30682 * 109.77746 * 179.97438 * 25 24 23 27 27 N 1.34516 * 108.29770 * 0.26337 * 26 25 24 28 28 H 0.96996 * 126.74364 * 179.73098 * 27 26 25 29 29 N 1.31499 * 125.65292 * 179.97438 * 24 23 22 30 30 C 1.39094 * 119.89885 * 0.25592 * 23 22 21 31 31 H 1.09000 * 109.47104 * 274.45372 * 1 2 3 32 32 H 1.09004 * 109.46632 * 34.45473 * 1 2 3 33 33 H 1.09002 * 109.46820 * 154.45359 * 1 2 3 34 34 H 1.08991 * 109.47570 * 37.86268 * 3 2 1 35 35 H 1.09004 * 109.47054 * 157.86255 * 3 2 1 36 36 H 1.08992 * 113.74445 * 252.25424 * 6 4 3 37 37 H 1.08997 * 113.74085 * 23.45816 * 6 4 3 38 38 H 1.09002 * 113.77107 * 90.69246 * 7 6 4 39 39 H 1.09000 * 113.77104 * 221.97771 * 7 6 4 40 40 H 0.96996 * 119.99912 * 180.02562 * 12 11 9 41 41 H 1.08003 * 119.95195 * 359.97438 * 20 19 17 42 42 H 1.07998 * 119.86851 * 180.02562 * 21 20 19 43 43 H 1.08006 * 119.91203 * 179.97438 * 22 21 20 44 44 H 1.08005 * 125.84991 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.13520 * 179.72443 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2816 1.8089 -1.4290 5 1 1.3132 1.8448 -1.9278 6 6 3.0922 3.1118 -1.5531 7 6 3.7013 2.4941 -2.8248 8 7 3.3475 1.1869 -2.2384 9 6 3.8189 -0.0903 -2.3858 10 1 4.8462 -0.3182 -2.1429 11 6 2.9762 -1.0922 -2.8476 12 7 3.3907 -2.3411 -2.8724 13 14 1.2541 -0.6677 -3.4338 14 1 1.2661 -0.4738 -4.9060 15 1 0.3266 -1.7745 -3.0878 16 1 0.8007 0.5828 -2.7735 17 6 2.1389 -1.1673 0.0005 18 8 3.3522 -1.1685 0.0731 19 6 1.4022 -2.4463 -0.0871 20 6 0.1078 -2.5454 0.4278 21 6 -0.5799 -3.7393 0.3466 22 6 0.0071 -4.8423 -0.2431 23 6 1.2986 -4.7560 -0.7608 24 6 1.9266 -5.9428 -1.3931 25 7 1.3582 -7.1486 -1.5276 26 6 2.1851 -7.9627 -2.1287 27 7 3.3208 -7.2921 -2.3928 28 1 4.1131 -7.6419 -2.8296 29 7 3.1329 -5.9849 -1.9151 30 6 1.9999 -3.5577 -0.6785 31 1 -0.3633 0.0798 1.0246 32 1 -0.3633 0.8474 -0.5814 33 1 -0.3633 -0.9272 -0.4432 34 1 1.6766 1.9890 0.6307 35 1 3.2036 1.1074 0.3873 36 1 2.4799 3.9932 -1.7433 37 1 3.8112 3.2598 -0.7474 38 1 3.1507 2.7306 -3.7353 39 1 4.7745 2.6579 -2.9222 40 1 2.8020 -3.0411 -3.1953 41 1 -0.3555 -1.6867 0.8909 42 1 -1.5808 -3.8116 0.7456 43 1 -0.5361 -5.7739 -0.3032 44 1 1.9915 -8.9980 -2.3679 45 1 3.0024 -3.4878 -1.0743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085759613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:46 Heat of formation + Delta-G solvation = 185.265253 kcal Electronic energy + Delta-G solvation = -31079.882674 eV Core-core repulsion = 27103.296785 eV Total energy + Delta-G solvation = -3976.585889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.83473 -39.80360 -38.25473 -37.17695 -34.78841 -32.95453 -32.20302 -31.61257 -30.77392 -29.77650 -28.45346 -27.84063 -26.21878 -23.79976 -23.42304 -22.81599 -22.39576 -21.43552 -20.40174 -19.28560 -18.91069 -18.11829 -16.64565 -16.31839 -16.03405 -15.63917 -15.27082 -15.18538 -15.02885 -14.69177 -14.38534 -13.77671 -13.53679 -13.39348 -13.19590 -13.02586 -12.64984 -12.55137 -12.15308 -12.06963 -11.92009 -11.85845 -11.72939 -11.31554 -10.95630 -10.83293 -10.68384 -10.59359 -10.24443 -10.10097 -9.98499 -9.88242 -9.75367 -9.67735 -9.38957 -8.80974 -8.39624 -8.25467 -8.11354 -7.76440 -6.21096 -5.78981 -3.48866 1.14233 1.68401 1.99518 2.82059 3.10280 3.37876 3.49862 3.51285 3.62958 3.89992 4.16022 4.51070 4.62711 4.77856 4.94450 5.03691 5.14357 5.23488 5.34416 5.42309 5.52652 5.61744 5.63402 5.71539 5.86936 5.92360 5.96080 6.01805 6.10742 6.18279 6.30151 6.34779 6.37855 6.39327 6.51076 6.55769 6.68048 6.73461 6.79091 6.90346 7.03600 7.17142 7.19968 7.33145 7.47537 8.12039 8.21617 8.22827 8.47019 9.01409 9.23393 9.80944 10.68012 11.32431 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.004602 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.025186 B = 6082.847539 C = 6975.174104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.613 5.613 3 C 0.128 3.872 4 C 0.101 3.899 5 H 0.056 0.944 6 C -0.146 4.146 7 C 0.102 3.898 8 N -0.604 5.604 9 C -0.216 4.216 10 H 0.072 0.928 11 C 0.059 3.941 12 N -0.879 5.879 13 Si 0.845 3.155 14 H -0.296 1.296 15 H -0.294 1.294 16 H -0.245 1.245 17 C 0.561 3.439 18 O -0.472 6.472 19 C -0.128 4.128 20 C -0.103 4.103 21 C -0.149 4.149 22 C -0.065 4.065 23 C -0.041 4.041 24 C 0.269 3.731 25 N -0.539 5.539 26 C 0.251 3.749 27 N -0.487 5.487 28 H 0.441 0.559 29 N -0.269 5.269 30 C -0.010 4.010 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.029 0.971 39 H 0.046 0.954 40 H 0.260 0.740 41 H 0.143 0.857 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.220 0.780 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 -4.912 5.352 10.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.349 5.349 3 C 0.004 3.996 4 C -0.005 4.005 5 H 0.074 0.926 6 C -0.185 4.185 7 C -0.023 4.023 8 N -0.333 5.333 9 C -0.345 4.345 10 H 0.090 0.910 11 C -0.143 4.143 12 N -0.519 5.519 13 Si 0.675 3.325 14 H -0.224 1.224 15 H -0.221 1.221 16 H -0.170 1.170 17 C 0.348 3.652 18 O -0.343 6.343 19 C -0.131 4.131 20 C -0.122 4.122 21 C -0.167 4.167 22 C -0.085 4.085 23 C -0.044 4.044 24 C -0.010 4.010 25 N -0.268 5.268 26 C -0.049 4.049 27 N -0.205 5.205 28 H 0.286 0.714 29 N -0.097 5.097 30 C -0.031 4.031 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.160 0.840 42 H 0.144 0.856 43 H 0.149 0.851 44 H 0.236 0.764 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -7.293 -4.823 5.429 10.291 hybrid contribution -0.916 -0.558 -1.244 1.643 sum -8.209 -5.382 4.184 10.670 Atomic orbital electron populations 1.22396 0.81902 1.03569 1.00403 1.47408 1.05462 1.06253 1.75748 1.21612 0.97832 0.83236 0.96897 1.23282 0.94442 0.90687 0.92109 0.92642 1.23550 0.99535 0.95855 0.99584 1.22757 0.97883 0.88033 0.93578 1.46050 1.38422 1.03351 1.45445 1.18269 0.97370 0.80576 1.38277 0.91025 1.25952 0.97248 0.95729 0.95377 1.69750 1.35974 0.99344 1.46823 0.87383 0.86974 0.79047 0.79091 1.22405 1.22087 1.17026 1.17824 0.87208 0.82632 0.77520 1.90814 1.12513 1.86145 1.44841 1.20018 0.94809 0.95363 1.02907 1.22163 0.93702 0.98293 0.98034 1.20890 1.00379 0.92738 1.02730 1.21253 0.93496 0.98836 0.94925 1.17422 0.94564 0.89808 1.02610 1.22303 0.89185 0.92255 0.97280 1.70449 1.32539 1.01439 1.22328 1.25969 0.83497 0.99823 0.95567 1.48233 1.16109 1.08833 1.47334 0.71361 1.78666 1.18172 0.95067 1.17789 1.22244 1.02369 0.88531 0.89923 0.92871 0.91990 0.89831 0.92253 0.88971 0.93112 0.90529 0.95322 0.93567 0.92947 0.83976 0.85554 0.85104 0.76375 0.80244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 8.30 59.85 0.50 1.43 16 2 N -0.61 -12.12 2.19 -182.68 -0.40 -12.52 16 3 C 0.13 2.43 5.41 -4.04 -0.02 2.41 16 4 C 0.10 2.07 3.19 -66.86 -0.21 1.86 16 5 H 0.06 1.19 5.67 -51.93 -0.29 0.90 16 6 C -0.15 -2.55 7.86 -25.80 -0.20 -2.76 16 7 C 0.10 2.11 8.93 -2.97 -0.03 2.08 16 8 N -0.60 -14.90 2.52 -170.74 -0.43 -15.33 16 9 C -0.22 -6.23 8.46 -15.06 -0.13 -6.36 16 10 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 11 C 0.06 1.71 3.55 -17.43 -0.06 1.64 16 12 N -0.88 -26.03 11.22 55.49 0.62 -25.41 16 13 Si 0.85 22.18 25.96 -169.99 -4.41 17.77 16 14 H -0.30 -8.18 7.11 56.52 0.40 -7.78 16 15 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 16 H -0.25 -5.92 4.17 56.52 0.24 -5.68 16 17 C 0.56 12.91 4.50 -12.32 -0.06 12.85 16 18 O -0.47 -12.77 13.76 5.32 0.07 -12.69 16 19 C -0.13 -2.72 5.49 -105.01 -0.58 -3.30 16 20 C -0.10 -1.72 7.46 -39.13 -0.29 -2.02 16 21 C -0.15 -2.23 10.02 -39.69 -0.40 -2.63 16 22 C -0.06 -1.08 9.68 -39.17 -0.38 -1.46 16 23 C -0.04 -0.83 5.87 -104.95 -0.62 -1.44 16 24 C 0.27 5.20 7.77 -156.62 -1.22 3.98 16 25 N -0.54 -8.66 10.81 -12.38 -0.13 -8.80 16 26 C 0.25 2.91 13.11 -90.70 -1.19 1.72 16 27 N -0.49 -6.39 7.44 29.52 0.22 -6.17 16 28 H 0.44 3.98 8.96 -182.35 -1.63 2.35 16 29 N -0.27 -5.23 12.42 32.10 0.40 -4.83 16 30 C -0.01 -0.23 8.05 -38.85 -0.31 -0.55 16 31 H 0.05 0.63 7.45 -51.93 -0.39 0.24 16 32 H 0.06 0.90 7.99 -51.93 -0.42 0.48 16 33 H 0.08 1.36 4.61 -51.93 -0.24 1.12 16 34 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 35 H 0.09 1.99 7.16 -51.93 -0.37 1.62 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.26 7.60 7.81 -40.82 -0.32 7.28 16 41 H 0.14 1.95 4.55 -52.48 -0.24 1.71 16 42 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.13 1.92 7.82 -52.48 -0.41 1.51 16 44 H 0.22 1.18 8.06 -52.48 -0.42 0.76 16 45 H 0.18 4.77 5.58 -52.48 -0.29 4.48 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -37.47 354.78 -10.85 -48.32 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.94 Total: 6.83 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -5.19 Total: 7.47 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: 0.28 Total: -73.05 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.07 Total: -12.69 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.41 Total: 17.77 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.47 -10.85 -48.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085759613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.589 kcal (2) G-P(sol) polarization free energy of solvation -37.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds