Wall clock time and date at job start Sat Apr 11 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00269 * 2 1 4 4 C 1.52998 * 109.47121 * 277.93123 * 3 2 1 5 5 H 1.09001 * 112.96334 * 53.86176 * 4 3 2 6 6 C 1.53944 * 113.76903 * 185.53699 * 4 3 2 7 7 C 1.53942 * 86.29175 * 137.91049 * 6 4 3 8 8 N 1.47580 * 86.11787 * 336.39258 * 7 6 4 9 9 C 1.36934 * 134.49698 * 204.64280 * 8 7 6 10 10 H 1.08001 * 119.99944 * 197.09556 * 9 8 7 11 11 C 1.38808 * 120.00073 * 17.09760 * 9 8 7 12 12 N 1.31617 * 119.99721 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00050 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47409 * 89.99799 * 13 11 9 15 15 H 1.48499 * 109.46974 * 209.99944 * 13 11 9 16 16 H 1.48497 * 109.47355 * 329.99468 * 13 11 9 17 17 C 1.34777 * 119.99429 * 180.02562 * 2 1 3 18 18 O 1.21564 * 119.99606 * 177.17607 * 17 2 1 19 19 C 1.47857 * 120.00406 * 357.17529 * 17 2 1 20 20 C 1.39616 * 120.11374 * 29.56422 * 19 17 2 21 21 C 1.37971 * 119.98771 * 179.74410 * 20 19 17 22 22 C 1.38265 * 120.21614 * 0.55770 * 21 20 19 23 23 C 1.38909 * 120.22884 * 359.69638 * 22 21 20 24 24 N 1.40224 * 119.99936 * 180.02562 * 23 22 21 25 25 C 1.34726 * 126.83830 * 359.68714 * 24 23 22 26 26 N 1.30852 * 108.03201 * 179.83406 * 25 24 23 27 27 C 1.33258 * 109.84281 * 0.44061 * 26 25 24 28 28 N 1.30757 * 109.00208 * 359.72830 * 27 26 25 29 29 C 1.38600 * 120.01019 * 0.02562 * 23 22 21 30 30 H 1.09004 * 109.46783 * 84.65727 * 1 2 3 31 31 H 1.09002 * 109.47307 * 204.65940 * 1 2 3 32 32 H 1.08998 * 109.47240 * 324.65956 * 1 2 3 33 33 H 1.09000 * 109.47426 * 157.93046 * 3 2 1 34 34 H 1.09002 * 109.46903 * 37.93429 * 3 2 1 35 35 H 1.09007 * 113.74499 * 252.25426 * 6 4 3 36 36 H 1.08996 * 113.74525 * 23.45501 * 6 4 3 37 37 H 1.08999 * 113.77507 * 90.69232 * 7 6 4 38 38 H 1.09004 * 113.77436 * 221.98209 * 7 6 4 39 39 H 0.97003 * 119.99795 * 180.02562 * 12 11 9 40 40 H 1.08003 * 120.00264 * 0.02562 * 20 19 17 41 41 H 1.08000 * 119.89049 * 180.27282 * 21 20 19 42 42 H 1.08005 * 119.88493 * 179.71705 * 22 21 20 43 43 H 1.07993 * 125.98378 * 359.97438 * 25 24 23 44 44 H 1.07994 * 125.50592 * 179.74236 * 27 26 25 45 45 H 1.07996 * 120.10922 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.2802 1.8098 -1.4287 5 1 1.3053 1.8920 -1.9094 6 6 3.1473 3.0747 -1.5639 7 6 3.7040 2.4345 -2.8485 8 7 3.3014 1.1427 -2.2594 9 6 3.7109 -0.1542 -2.4193 10 1 3.0827 -0.9646 -2.0801 11 6 4.9334 -0.4273 -3.0174 12 7 5.6987 0.5603 -3.4313 13 14 5.4916 -2.1965 -3.2362 14 1 5.0171 -2.7068 -4.5475 15 1 6.9746 -2.2570 -3.1887 16 1 4.9271 -3.0321 -2.1462 17 6 2.1388 -1.1673 -0.0005 18 8 3.3533 -1.1679 -0.0524 19 6 1.4008 -2.4470 0.0620 20 6 0.1166 -2.5421 -0.4774 21 6 -0.5676 -3.7389 -0.4223 22 6 0.0097 -4.8436 0.1762 23 6 1.2848 -4.7576 0.7204 24 7 1.8659 -5.8811 1.3258 25 6 1.3134 -7.1024 1.4606 26 7 2.1752 -7.8712 2.0759 27 6 3.2787 -7.1790 2.3570 28 7 3.1374 -5.9556 1.9178 29 6 1.9829 -3.5616 0.6652 30 1 -0.3633 0.0957 -1.0233 31 1 -0.3634 -0.9339 0.4288 32 1 -0.3633 0.8383 0.5944 33 1 3.2040 1.1071 0.3861 34 1 1.6773 1.9886 0.6318 35 1 2.5726 3.9840 -1.7402 36 1 3.8869 3.1865 -0.7711 37 1 3.1482 2.6995 -3.7479 38 1 4.7816 2.5493 -2.9652 39 1 6.5528 0.3694 -3.8496 40 1 -0.3393 -1.6801 -0.9418 41 1 -1.5592 -3.8119 -0.8440 42 1 -0.5326 -5.7766 0.2203 43 1 0.3321 -7.3962 1.1186 44 1 4.1494 -7.5661 2.8653 45 1 2.9742 -3.4928 1.0882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085810607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:03 Heat of formation + Delta-G solvation = 189.494960 kcal Electronic energy + Delta-G solvation = -29951.730891 eV Core-core repulsion = 25975.328415 eV Total energy + Delta-G solvation = -3976.402475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.51434 -40.33227 -38.64144 -37.42297 -35.26816 -34.24601 -32.01479 -31.86942 -31.12206 -30.08394 -28.15918 -27.67048 -26.56930 -24.30405 -24.07052 -23.17733 -22.46113 -21.66222 -21.28173 -19.69855 -18.96068 -18.14864 -16.88061 -16.79025 -16.29617 -16.05048 -15.87768 -15.33763 -15.23065 -14.75215 -14.58431 -14.39047 -14.04121 -13.72465 -13.53624 -13.46296 -13.11391 -12.80783 -12.69116 -12.58206 -12.27543 -11.58714 -11.52812 -11.45067 -11.27626 -11.02136 -10.86610 -10.71270 -10.55778 -10.41043 -10.33497 -10.11154 -9.87937 -9.59017 -9.46337 -9.24013 -9.11857 -8.56518 -8.46511 -8.08223 -6.58663 -5.55375 -2.88667 0.42777 0.88743 1.74599 1.94503 2.67038 3.08537 3.33717 3.51827 3.58549 3.67566 3.77375 3.96731 4.19322 4.47891 4.56667 4.63442 4.69111 4.85318 4.88782 5.12728 5.22892 5.27887 5.29820 5.45376 5.55732 5.63137 5.68447 5.73518 5.81360 5.88393 5.99183 5.99996 6.02694 6.09565 6.12386 6.21947 6.34384 6.40071 6.46717 6.74838 6.77655 6.78605 6.99524 7.36076 7.61708 7.75331 7.77372 7.84400 8.24304 8.72925 9.25707 9.94211 10.80185 11.59597 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012397 B = 0.003849 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.007295 B = 7272.880001 C = 8691.855568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.606 5.606 3 C 0.119 3.881 4 C 0.123 3.877 5 H 0.041 0.959 6 C -0.154 4.154 7 C 0.139 3.861 8 N -0.593 5.593 9 C -0.184 4.184 10 H 0.078 0.922 11 C -0.005 4.005 12 N -0.922 5.922 13 Si 0.898 3.102 14 H -0.296 1.296 15 H -0.292 1.292 16 H -0.275 1.275 17 C 0.535 3.465 18 O -0.469 6.469 19 C -0.091 4.091 20 C -0.108 4.108 21 C -0.102 4.102 22 C -0.120 4.120 23 C 0.135 3.865 24 N -0.325 5.325 25 C 0.257 3.743 26 N -0.540 5.540 27 C 0.202 3.798 28 N -0.306 5.306 29 C -0.058 4.058 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.017 0.983 38 H 0.086 0.914 39 H 0.248 0.752 40 H 0.154 0.846 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.222 0.778 44 H 0.223 0.777 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.185 -6.872 10.205 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.340 5.340 3 C -0.004 4.004 4 C 0.014 3.986 5 H 0.059 0.941 6 C -0.193 4.193 7 C 0.014 3.986 8 N -0.319 5.319 9 C -0.311 4.311 10 H 0.095 0.905 11 C -0.200 4.200 12 N -0.570 5.570 13 Si 0.729 3.271 14 H -0.224 1.224 15 H -0.219 1.219 16 H -0.200 1.200 17 C 0.321 3.679 18 O -0.340 6.340 19 C -0.095 4.095 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.141 4.141 23 C 0.043 3.957 24 N -0.109 5.109 25 C -0.038 4.038 26 N -0.266 5.266 27 C -0.100 4.100 28 N -0.131 5.131 29 C -0.079 4.079 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.035 0.965 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.171 0.829 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.238 0.762 44 H 0.239 0.761 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.728 -6.928 10.254 20.013 hybrid contribution 0.026 -1.044 -0.498 1.157 sum -15.702 -7.972 9.756 20.132 Atomic orbital electron populations 1.22392 0.81162 1.03139 1.01336 1.47456 1.05936 1.06174 1.74442 1.21917 0.97784 0.82695 0.97983 1.22694 0.93498 0.91415 0.90951 0.94131 1.23729 0.99178 0.95188 1.01197 1.22448 1.01039 0.83950 0.91205 1.45876 1.38570 1.03053 1.44398 1.18997 0.99106 0.81057 1.31980 0.90474 1.24760 0.96220 0.96762 1.02279 1.69790 1.12093 1.29235 1.45897 0.86286 0.77884 0.85459 0.77432 1.22393 1.21860 1.20043 1.17960 0.87533 0.82955 0.79472 1.90999 1.12482 1.86153 1.44383 1.20062 0.94711 0.94801 0.99909 1.22189 0.93531 0.99020 0.97924 1.20928 1.00578 0.91571 0.99012 1.20887 0.92866 1.00373 1.00011 1.17399 0.93356 0.85329 0.99620 1.47739 1.12171 1.09255 1.41741 1.26152 1.00281 0.81311 0.96099 1.70613 1.02669 1.33232 1.20071 1.26194 0.97890 0.87582 0.98365 1.78289 0.96463 1.21491 1.16848 1.20981 1.00301 0.89409 0.97183 0.92486 0.89806 0.91665 0.88947 0.91752 0.93428 0.90697 0.96507 0.89614 0.94155 0.82881 0.84198 0.84918 0.76162 0.76076 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 8.80 59.85 0.53 1.21 16 2 N -0.61 -9.93 2.88 -182.69 -0.53 -10.45 16 3 C 0.12 2.10 5.39 -4.05 -0.02 2.08 16 4 C 0.12 2.43 4.52 -66.86 -0.30 2.13 16 5 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.15 -2.92 7.86 -25.81 -0.20 -3.12 16 7 C 0.14 3.33 7.97 -2.98 -0.02 3.30 16 8 N -0.59 -15.29 3.54 -170.75 -0.60 -15.89 16 9 C -0.18 -5.30 8.36 -15.06 -0.13 -5.43 16 10 H 0.08 2.23 4.97 -52.49 -0.26 1.97 16 11 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 12 N -0.92 -28.77 11.28 55.49 0.63 -28.14 16 13 Si 0.90 24.62 29.55 -169.99 -5.02 19.60 16 14 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 15 H -0.29 -8.05 7.11 56.52 0.40 -7.65 16 16 H -0.28 -7.65 7.11 56.52 0.40 -7.24 16 17 C 0.53 10.33 5.80 -12.32 -0.07 10.26 16 18 O -0.47 -11.54 13.10 5.31 0.07 -11.47 16 19 C -0.09 -1.43 5.51 -104.99 -0.58 -2.01 16 20 C -0.11 -1.25 7.45 -39.17 -0.29 -1.54 16 21 C -0.10 -0.90 10.02 -39.67 -0.40 -1.30 16 22 C -0.12 -1.12 9.47 -39.32 -0.37 -1.49 16 23 C 0.14 1.77 6.69 -83.63 -0.56 1.21 16 24 N -0.32 -4.29 3.82 -11.84 -0.05 -4.34 16 25 C 0.26 2.66 11.98 -90.37 -1.08 1.58 16 26 N -0.54 -6.50 11.19 -15.75 -0.18 -6.68 16 27 C 0.20 2.45 13.03 -91.76 -1.20 1.26 16 28 N -0.31 -4.56 12.05 29.30 0.35 -4.21 16 29 C -0.06 -0.93 9.23 -38.99 -0.36 -1.29 16 30 H 0.06 0.59 7.44 -51.93 -0.39 0.21 16 31 H 0.08 0.77 4.65 -51.93 -0.24 0.53 16 32 H 0.06 0.57 8.04 -51.93 -0.42 0.16 16 33 H 0.09 1.95 7.23 -51.93 -0.38 1.57 16 34 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 2.32 6.60 -51.93 -0.34 1.98 16 39 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.15 1.53 4.62 -52.48 -0.24 1.29 16 41 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.13 0.73 6.79 -52.48 -0.36 0.37 16 43 H 0.22 1.16 7.09 -52.49 -0.37 0.78 16 44 H 0.22 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.15 2.73 7.60 -52.49 -0.40 2.33 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -39.19 366.34 -10.44 -49.63 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.48 Total: -0.16 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -5.15 Total: 6.60 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -0.37 Total: -69.72 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.02 Total: 19.60 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.19 -10.44 -49.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085810607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.124 kcal (2) G-P(sol) polarization free energy of solvation -39.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds