Wall clock time and date at job start Sat Apr 11 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00269 * 2 1 4 4 C 1.52998 * 109.47121 * 277.93123 * 3 2 1 5 5 H 1.09001 * 112.96334 * 53.86176 * 4 3 2 6 6 C 1.53944 * 113.76903 * 185.53699 * 4 3 2 7 7 C 1.53942 * 86.29175 * 137.91049 * 6 4 3 8 8 N 1.47580 * 86.11787 * 336.39258 * 7 6 4 9 9 C 1.36934 * 134.49698 * 204.64280 * 8 7 6 10 10 H 1.08001 * 119.99944 * 197.09556 * 9 8 7 11 11 C 1.38808 * 120.00073 * 17.09760 * 9 8 7 12 12 N 1.31617 * 119.99721 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00050 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47409 * 89.99799 * 13 11 9 15 15 H 1.48499 * 109.46974 * 209.99944 * 13 11 9 16 16 H 1.48497 * 109.47355 * 329.99468 * 13 11 9 17 17 C 1.34777 * 119.99429 * 180.02562 * 2 1 3 18 18 O 1.21564 * 119.99606 * 177.17607 * 17 2 1 19 19 C 1.47857 * 120.00406 * 357.17529 * 17 2 1 20 20 C 1.39616 * 120.11374 * 29.56422 * 19 17 2 21 21 C 1.37971 * 119.98771 * 179.74410 * 20 19 17 22 22 C 1.38265 * 120.21614 * 0.55770 * 21 20 19 23 23 C 1.38909 * 120.22884 * 359.69638 * 22 21 20 24 24 N 1.40224 * 119.99936 * 180.02562 * 23 22 21 25 25 C 1.34726 * 126.83830 * 359.68714 * 24 23 22 26 26 N 1.30852 * 108.03201 * 179.83406 * 25 24 23 27 27 C 1.33258 * 109.84281 * 0.44061 * 26 25 24 28 28 N 1.30757 * 109.00208 * 359.72830 * 27 26 25 29 29 C 1.38600 * 120.01019 * 0.02562 * 23 22 21 30 30 H 1.09004 * 109.46783 * 84.65727 * 1 2 3 31 31 H 1.09002 * 109.47307 * 204.65940 * 1 2 3 32 32 H 1.08998 * 109.47240 * 324.65956 * 1 2 3 33 33 H 1.09000 * 109.47426 * 157.93046 * 3 2 1 34 34 H 1.09002 * 109.46903 * 37.93429 * 3 2 1 35 35 H 1.09007 * 113.74499 * 252.25426 * 6 4 3 36 36 H 1.08996 * 113.74525 * 23.45501 * 6 4 3 37 37 H 1.08999 * 113.77507 * 90.69232 * 7 6 4 38 38 H 1.09004 * 113.77436 * 221.98209 * 7 6 4 39 39 H 0.97003 * 119.99795 * 180.02562 * 12 11 9 40 40 H 1.08003 * 120.00264 * 0.02562 * 20 19 17 41 41 H 1.08000 * 119.89049 * 180.27282 * 21 20 19 42 42 H 1.08005 * 119.88493 * 179.71705 * 22 21 20 43 43 H 1.07993 * 125.98378 * 359.97438 * 25 24 23 44 44 H 1.07994 * 125.50592 * 179.74236 * 27 26 25 45 45 H 1.07996 * 120.10922 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.2802 1.8098 -1.4287 5 1 1.3053 1.8920 -1.9094 6 6 3.1473 3.0747 -1.5639 7 6 3.7040 2.4345 -2.8485 8 7 3.3014 1.1427 -2.2594 9 6 3.7109 -0.1542 -2.4193 10 1 3.0827 -0.9646 -2.0801 11 6 4.9334 -0.4273 -3.0174 12 7 5.6987 0.5603 -3.4313 13 14 5.4916 -2.1965 -3.2362 14 1 5.0171 -2.7068 -4.5475 15 1 6.9746 -2.2570 -3.1887 16 1 4.9271 -3.0321 -2.1462 17 6 2.1388 -1.1673 -0.0005 18 8 3.3533 -1.1679 -0.0524 19 6 1.4008 -2.4470 0.0620 20 6 0.1166 -2.5421 -0.4774 21 6 -0.5676 -3.7389 -0.4223 22 6 0.0097 -4.8436 0.1762 23 6 1.2848 -4.7576 0.7204 24 7 1.8659 -5.8811 1.3258 25 6 1.3134 -7.1024 1.4606 26 7 2.1752 -7.8712 2.0759 27 6 3.2787 -7.1790 2.3570 28 7 3.1374 -5.9556 1.9178 29 6 1.9829 -3.5616 0.6652 30 1 -0.3633 0.0957 -1.0233 31 1 -0.3634 -0.9339 0.4288 32 1 -0.3633 0.8383 0.5944 33 1 3.2040 1.1071 0.3861 34 1 1.6773 1.9886 0.6318 35 1 2.5726 3.9840 -1.7402 36 1 3.8869 3.1865 -0.7711 37 1 3.1482 2.6995 -3.7479 38 1 4.7816 2.5493 -2.9652 39 1 6.5528 0.3694 -3.8496 40 1 -0.3393 -1.6801 -0.9418 41 1 -1.5592 -3.8119 -0.8440 42 1 -0.5326 -5.7766 0.2203 43 1 0.3321 -7.3962 1.1186 44 1 4.1494 -7.5661 2.8653 45 1 2.9742 -3.4928 1.0882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085810607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:02 Heat of formation + Delta-G solvation = 163.338791 kcal Electronic energy + Delta-G solvation = -29952.865107 eV Core-core repulsion = 25975.328415 eV Total energy + Delta-G solvation = -3977.536692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.40537 -41.53589 -39.93446 -39.00120 -36.62107 -35.23684 -34.13196 -32.83747 -32.08370 -31.13845 -29.82974 -29.28997 -27.71650 -25.32394 -25.21624 -25.12438 -23.74818 -22.65385 -22.27779 -20.86701 -20.72278 -19.24369 -18.78947 -17.82903 -17.30203 -17.19128 -16.97782 -16.85774 -16.48708 -16.24336 -15.88990 -15.72763 -15.21355 -15.06355 -14.90836 -14.71698 -14.33484 -14.14472 -13.89142 -13.61407 -13.43261 -13.23820 -13.08182 -12.99261 -12.64751 -12.55662 -12.43497 -12.43219 -12.22781 -11.76812 -11.72794 -11.41143 -11.34688 -11.25086 -11.07286 -10.84130 -10.54414 -10.14657 -9.51104 -9.46158 -8.64036 -7.80917 -5.11909 -0.44341 -0.10526 0.87860 1.09643 1.25723 1.31584 1.43582 1.78882 1.92672 2.09629 2.47922 2.68071 3.24309 3.30395 3.42360 3.44034 3.61041 3.72344 3.89493 4.00785 4.01879 4.04130 4.26734 4.32764 4.36675 4.40949 4.49625 4.54038 4.71779 4.75952 4.78256 4.89520 4.92115 4.95357 5.08789 5.11588 5.17044 5.21165 5.25704 5.29139 5.43419 5.54368 5.64434 5.74598 5.86398 5.94475 6.13302 6.51074 6.87056 7.05093 7.35769 7.74880 8.68262 9.34429 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012397 B = 0.003849 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.007295 B = 7272.880001 C = 8691.855568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.604 5.604 3 C 0.123 3.877 4 C 0.128 3.872 5 H 0.070 0.930 6 C -0.127 4.127 7 C 0.126 3.874 8 N -0.627 5.627 9 C -0.156 4.156 10 H 0.073 0.927 11 C -0.071 4.071 12 N -0.955 5.955 13 Si 0.942 3.058 14 H -0.285 1.285 15 H -0.299 1.299 16 H -0.292 1.292 17 C 0.527 3.473 18 O -0.547 6.547 19 C -0.120 4.120 20 C -0.103 4.103 21 C -0.081 4.081 22 C -0.097 4.097 23 C 0.123 3.877 24 N -0.340 5.340 25 C 0.272 3.728 26 N -0.560 5.560 27 C 0.204 3.796 28 N -0.366 5.366 29 C -0.092 4.092 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.023 0.977 38 H 0.045 0.955 39 H 0.238 0.762 40 H 0.174 0.826 41 H 0.196 0.804 42 H 0.186 0.814 43 H 0.277 0.723 44 H 0.248 0.752 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.441 -7.653 10.449 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.337 5.337 3 C -0.001 4.001 4 C 0.021 3.979 5 H 0.087 0.913 6 C -0.165 4.165 7 C 0.001 3.999 8 N -0.353 5.353 9 C -0.285 4.285 10 H 0.091 0.909 11 C -0.262 4.262 12 N -0.608 5.608 13 Si 0.775 3.225 14 H -0.213 1.213 15 H -0.226 1.226 16 H -0.218 1.218 17 C 0.316 3.684 18 O -0.424 6.424 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.099 4.099 22 C -0.118 4.118 23 C 0.031 3.969 24 N -0.124 5.124 25 C -0.022 4.022 26 N -0.286 5.286 27 C -0.097 4.097 28 N -0.192 5.192 29 C -0.113 4.113 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.191 0.809 41 H 0.213 0.787 42 H 0.203 0.797 43 H 0.292 0.708 44 H 0.264 0.736 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.084 -7.689 10.520 25.641 hybrid contribution 1.735 -0.852 -0.434 1.981 sum -20.349 -8.541 10.086 24.264 Atomic orbital electron populations 1.22772 0.77229 1.05666 1.03068 1.47631 1.08383 1.04839 1.72799 1.21765 0.96746 0.84405 0.97189 1.22939 0.93241 0.90463 0.91232 0.91273 1.23468 0.98714 0.96659 0.97675 1.22462 0.99067 0.84434 0.93919 1.46268 1.40390 1.02475 1.46132 1.19141 0.98248 0.82822 1.28325 0.90924 1.25285 0.97364 0.98832 1.04734 1.69940 1.12280 1.29868 1.48684 0.85564 0.76914 0.83063 0.76984 1.21295 1.22646 1.21826 1.18731 0.87109 0.84976 0.77601 1.90954 1.15771 1.87398 1.48313 1.19857 0.96726 0.92911 1.02854 1.22464 0.91512 1.01324 0.96860 1.21565 1.01997 0.89598 0.96699 1.21542 0.90674 1.02717 0.96846 1.17679 0.94696 0.84235 1.00255 1.47808 1.11941 1.10228 1.42404 1.27250 1.01389 0.79697 0.93880 1.70659 1.03020 1.33741 1.21191 1.26776 0.98754 0.86898 0.97312 1.78262 0.98658 1.23283 1.19019 1.20727 0.99255 0.91792 0.99575 0.90991 0.87966 0.88568 0.93624 0.86624 0.88578 0.91360 0.95886 0.93667 0.95250 0.80868 0.78740 0.79693 0.70812 0.73642 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.93 8.80 127.77 1.12 2.05 16 2 N -0.60 -19.08 2.88 -850.17 -2.45 -21.53 16 3 C 0.12 4.16 5.39 86.38 0.47 4.62 16 4 C 0.13 4.80 4.52 45.09 0.20 5.01 16 5 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 6 C -0.13 -4.57 7.86 31.25 0.25 -4.32 16 7 C 0.13 6.15 7.97 86.48 0.69 6.83 16 8 N -0.63 -32.85 3.54 -694.14 -2.46 -35.31 16 9 C -0.16 -9.37 8.36 84.03 0.70 -8.67 16 10 H 0.07 4.39 4.97 -2.91 -0.01 4.38 16 11 C -0.07 -4.54 5.50 84.86 0.47 -4.07 16 12 N -0.96 -63.22 11.28 21.65 0.24 -62.98 16 13 Si 0.94 53.99 29.55 68.60 2.03 56.02 16 14 H -0.29 -15.54 7.11 99.48 0.71 -14.83 16 15 H -0.30 -17.24 7.11 99.48 0.71 -16.53 16 16 H -0.29 -17.27 7.11 99.48 0.71 -16.56 16 17 C 0.53 21.23 5.80 86.79 0.50 21.73 16 18 O -0.55 -29.37 13.10 -3.92 -0.05 -29.42 16 19 C -0.12 -3.81 5.51 -20.10 -0.11 -3.92 16 20 C -0.10 -2.02 7.45 22.54 0.17 -1.85 16 21 C -0.08 -0.93 10.02 22.21 0.22 -0.70 16 22 C -0.10 -1.30 9.47 22.44 0.21 -1.09 16 23 C 0.12 3.09 6.69 38.05 0.25 3.35 16 24 N -0.34 -8.75 3.82 -191.37 -0.73 -9.48 16 25 C 0.27 4.84 11.98 180.26 2.16 7.00 16 26 N -0.56 -12.64 11.19 -203.73 -2.28 -14.92 16 27 C 0.20 5.04 13.03 180.75 2.35 7.40 16 28 N -0.37 -11.56 12.05 -61.21 -0.74 -12.29 16 29 C -0.09 -3.16 9.23 22.65 0.21 -2.95 16 30 H 0.07 1.10 7.44 -2.38 -0.02 1.09 16 31 H 0.10 1.44 4.65 -2.39 -0.01 1.43 16 32 H 0.10 1.14 8.04 -2.39 -0.02 1.12 16 33 H 0.05 2.00 7.23 -2.39 -0.02 1.98 16 34 H 0.12 2.73 8.05 -2.39 -0.02 2.71 16 35 H 0.10 2.60 8.14 -2.38 -0.02 2.59 16 36 H 0.07 2.56 8.10 -2.39 -0.02 2.54 16 37 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.04 2.57 6.60 -2.39 -0.02 2.55 16 39 H 0.24 15.54 8.31 -92.71 -0.77 14.76 16 40 H 0.17 2.62 4.62 -2.91 -0.01 2.60 16 41 H 0.20 0.28 8.06 -2.91 -0.02 0.26 16 42 H 0.19 0.52 6.79 -2.91 -0.02 0.50 16 43 H 0.28 1.21 7.09 -2.91 -0.02 1.19 16 44 H 0.25 4.14 8.06 -2.91 -0.02 4.12 16 45 H 0.10 4.25 7.60 -2.91 -0.02 4.23 16 Total: -1.00 -100.49 366.34 4.47 -96.02 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.03 Total: 3.49 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: 9.87 Total: 30.41 kcal Atomic # 7 Polarization: -148.11 SS G_CDS: -8.41 Total: -156.52 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.05 Total: -29.42 kcal Atomic # 14 Polarization: 53.99 SS G_CDS: 2.03 Total: 56.02 kcal Total: -100.49 4.47 -96.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085810607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.357 kcal (2) G-P(sol) polarization free energy of solvation -100.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds