Wall clock time and date at job start Sat Apr 11 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46493 * 120.00426 * 2 1 4 4 C 1.53005 * 109.46837 * 276.12253 * 3 2 1 5 5 H 1.09002 * 112.96527 * 66.36223 * 4 3 2 6 6 C 1.53947 * 113.77052 * 294.68599 * 4 3 2 7 7 C 1.53944 * 86.29041 * 222.08855 * 6 4 3 8 8 N 1.47578 * 113.77249 * 198.04035 * 4 3 2 9 9 C 1.36934 * 134.49213 * 318.93870 * 8 4 3 10 10 H 1.08004 * 120.00500 * 5.38218 * 9 8 4 11 11 C 1.38816 * 120.00104 * 185.38446 * 9 8 4 12 12 N 1.31615 * 119.99960 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00340 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47478 * 89.99403 * 13 11 9 15 15 H 1.48497 * 109.47194 * 209.99909 * 13 11 9 16 16 H 1.48507 * 109.46527 * 329.99713 * 13 11 9 17 17 C 1.34778 * 119.99762 * 179.97438 * 2 1 3 18 18 O 1.21574 * 119.99952 * 184.97356 * 17 2 1 19 19 C 1.47632 * 119.99956 * 4.98090 * 17 2 1 20 20 C 1.39624 * 120.19004 * 61.78632 * 19 17 2 21 21 C 1.37858 * 119.91741 * 179.97438 * 20 19 17 22 22 C 1.38506 * 120.30131 * 359.97438 * 21 20 19 23 23 C 1.38106 * 120.38509 * 359.76594 * 22 21 20 24 24 C 1.38725 * 120.07308 * 0.51370 * 23 22 21 25 25 N 1.39810 * 120.15030 * 179.74063 * 24 23 22 26 26 C 1.36324 * 126.86750 * 355.76196 * 25 24 23 27 27 C 1.34958 * 106.77599 * 180.13540 * 26 25 24 28 28 N 1.33377 * 109.02055 * 359.61679 * 27 26 25 29 29 N 1.28766 * 109.92269 * 0.24037 * 28 27 26 30 30 H 1.08998 * 109.47190 * 264.54929 * 1 2 3 31 31 H 1.09006 * 109.46695 * 24.54754 * 1 2 3 32 32 H 1.08992 * 109.47364 * 144.55006 * 1 2 3 33 33 H 1.08998 * 109.47326 * 36.11857 * 3 2 1 34 34 H 1.08997 * 109.47360 * 156.12438 * 3 2 1 35 35 H 1.08999 * 113.73877 * 336.43618 * 6 4 3 36 36 H 1.08997 * 113.74406 * 107.63643 * 6 4 3 37 37 H 1.09004 * 113.76715 * 137.90443 * 7 6 4 38 38 H 1.08993 * 113.77399 * 269.19401 * 7 6 4 39 39 H 0.97000 * 120.00419 * 179.97438 * 12 11 9 40 40 H 1.08001 * 120.04239 * 0.02562 * 20 19 17 41 41 H 1.07997 * 119.85378 * 180.02562 * 21 20 19 42 42 H 1.07998 * 119.81054 * 179.97438 * 22 21 20 43 43 H 1.08003 * 119.96711 * 180.25360 * 23 22 21 44 44 H 1.07996 * 126.61243 * 359.97438 * 26 25 24 45 45 H 1.07997 * 125.48958 * 179.87829 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3193 1.7872 -1.4343 5 1 1.3594 2.0670 -1.8683 6 6 3.1754 0.8910 -2.3476 7 6 3.7802 2.1969 -2.8942 8 7 3.3718 2.8065 -1.6111 9 6 3.7980 3.8827 -0.8795 10 1 3.3768 4.0731 0.0967 11 6 4.7714 4.7291 -1.3924 12 7 5.2850 4.4969 -2.5818 13 14 5.3523 6.1976 -0.3948 14 1 6.5022 5.7956 0.4544 15 1 5.7722 7.2857 -1.3140 16 1 4.2439 6.6791 0.4685 17 6 2.1389 -1.1672 0.0005 18 8 3.3512 -1.1692 0.0918 19 6 1.4048 -2.4434 -0.1099 20 6 0.6425 -2.7188 -1.2468 21 6 -0.0403 -3.9124 -1.3443 22 6 0.0265 -4.8414 -0.3191 23 6 0.7811 -4.5842 0.8086 24 6 1.4698 -3.3857 0.9258 25 7 2.2297 -3.1213 2.0691 26 6 2.3289 -3.9004 3.1834 27 6 3.1623 -3.2624 4.0318 28 7 3.5762 -2.1286 3.4641 29 7 3.0472 -2.0038 2.2968 30 1 -0.3633 -0.0976 1.0230 31 1 -0.3633 0.9349 -0.4270 32 1 -0.3633 -0.8371 -0.5960 33 1 1.6604 1.9984 0.6057 34 1 3.1930 1.1134 0.4159 35 1 3.8894 0.2690 -1.8076 36 1 2.5959 0.3324 -3.0825 37 1 4.8598 2.1546 -3.0380 38 1 3.2514 2.5977 -3.7589 39 1 5.9649 5.0885 -2.9404 40 1 0.5885 -1.9979 -2.0492 41 1 -0.6292 -4.1246 -2.2243 42 1 -0.5119 -5.7738 -0.4036 43 1 0.8317 -5.3151 1.6021 44 1 1.8338 -4.8446 3.3554 45 1 3.4512 -3.6152 5.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086003530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:19 Heat of formation + Delta-G solvation = 182.255314 kcal Electronic energy + Delta-G solvation = -30048.568242 eV Core-core repulsion = 26071.851832 eV Total energy + Delta-G solvation = -3976.716410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.34203 -40.35277 -38.78449 -37.44205 -35.19281 -34.62239 -32.18454 -31.83488 -30.85476 -29.93950 -28.35711 -27.72016 -26.45379 -24.68852 -24.11865 -23.17733 -22.61324 -21.61950 -21.40292 -19.68852 -18.88666 -18.46969 -17.31317 -16.54205 -16.19119 -16.03609 -15.75066 -15.66229 -15.24940 -14.94160 -14.62788 -14.45283 -14.18195 -13.88812 -13.61859 -13.46338 -13.26635 -12.85516 -12.53780 -12.43997 -12.22044 -11.98703 -11.83179 -11.47069 -11.32298 -11.26071 -11.19129 -10.93477 -10.74464 -10.61845 -10.34427 -9.82070 -9.70843 -9.60383 -9.55586 -9.43862 -9.27317 -8.75418 -8.68478 -8.19094 -6.74504 -5.65311 -2.96530 0.18045 0.65250 1.62335 1.94432 2.45584 2.85411 3.10790 3.35485 3.48023 3.52715 3.53901 4.02971 4.18391 4.34753 4.50216 4.56416 4.58635 4.79167 4.82679 4.93404 5.02232 5.15276 5.21182 5.31460 5.32470 5.44045 5.56449 5.66362 5.69717 5.72340 5.80058 5.90570 5.96106 6.02530 6.06375 6.14715 6.23368 6.47533 6.57212 6.65098 6.81961 6.85803 6.90911 7.38190 7.55747 7.68647 7.71516 8.06192 8.10033 8.47853 9.16078 9.82959 10.73718 11.52575 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.003304 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.720189 B = 8472.672230 C = 9731.932650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.602 5.602 3 C 0.118 3.882 4 C 0.129 3.871 5 H 0.040 0.960 6 C -0.159 4.159 7 C 0.166 3.834 8 N -0.599 5.599 9 C -0.220 4.220 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.921 5.921 13 Si 0.909 3.091 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.558 3.442 18 O -0.489 6.489 19 C -0.107 4.107 20 C -0.068 4.068 21 C -0.121 4.121 22 C -0.084 4.084 23 C -0.134 4.134 24 C 0.176 3.824 25 N -0.329 5.329 26 C 0.009 3.991 27 C -0.072 4.072 28 N -0.236 5.236 29 N -0.007 5.007 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.026 0.974 39 H 0.252 0.748 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.193 0.807 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.521 -24.022 6.484 29.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.336 5.336 3 C -0.005 4.005 4 C 0.021 3.979 5 H 0.057 0.943 6 C -0.197 4.197 7 C 0.040 3.960 8 N -0.326 5.326 9 C -0.348 4.348 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.739 3.261 14 H -0.215 1.215 15 H -0.218 1.218 16 H -0.207 1.207 17 C 0.343 3.657 18 O -0.361 6.361 19 C -0.112 4.112 20 C -0.087 4.087 21 C -0.139 4.139 22 C -0.102 4.102 23 C -0.155 4.155 24 C 0.082 3.918 25 N -0.111 5.111 26 C -0.139 4.139 27 C -0.226 4.226 28 N -0.107 5.107 29 N 0.015 4.985 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.161 0.839 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.210 0.790 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -15.067 -22.347 6.093 27.632 hybrid contribution -0.321 -0.145 0.837 0.908 sum -15.388 -22.492 6.930 28.119 Atomic orbital electron populations 1.21839 0.80397 1.03280 1.01238 1.47610 1.06374 1.06118 1.73471 1.21831 0.98142 0.81984 0.98517 1.22511 0.92903 0.89538 0.92939 0.94261 1.23808 0.99574 0.97700 0.98661 1.22125 0.99377 0.86242 0.88219 1.45969 1.34564 1.30652 1.21377 1.18986 1.17312 1.00763 0.97724 0.90391 1.24775 0.99868 0.99018 0.96723 1.69837 1.30842 1.39173 1.16932 0.86168 0.78709 0.82336 0.78860 1.21523 1.21764 1.20739 1.17762 0.87311 0.82866 0.77777 1.90870 1.12881 1.86189 1.46146 1.19907 1.00394 0.96008 0.94938 1.21263 0.93676 0.97646 0.96144 1.21242 0.99830 0.93440 0.99432 1.21118 0.97167 0.99607 0.92344 1.20824 0.99332 0.94934 1.00391 1.17449 0.94281 0.95009 0.85074 1.48148 1.32938 1.17963 1.12082 1.23478 1.03115 0.99770 0.87566 1.23273 1.02383 0.93950 1.02976 1.74484 1.17523 1.16737 1.02000 1.82821 1.03715 1.02426 1.09544 0.93352 0.90429 0.91454 0.91607 0.88467 0.89870 0.94028 0.91650 0.95657 0.93776 0.83929 0.84464 0.84417 0.84599 0.79024 0.79466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.22 59.85 0.61 1.47 16 2 N -0.60 -9.58 2.79 -182.78 -0.51 -10.09 16 3 C 0.12 2.31 5.41 -4.04 -0.02 2.29 16 4 C 0.13 2.76 4.57 -66.86 -0.31 2.46 16 5 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 6 C -0.16 -3.38 7.33 -25.79 -0.19 -3.57 16 7 C 0.17 4.20 7.40 -2.85 -0.02 4.18 16 8 N -0.60 -16.10 3.58 -169.72 -0.61 -16.71 16 9 C -0.22 -6.42 10.51 -15.06 -0.16 -6.58 16 10 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -28.58 11.55 55.49 0.64 -27.94 16 13 Si 0.91 23.18 29.55 -169.99 -5.02 18.15 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 17 C 0.56 9.44 5.21 -12.43 -0.06 9.38 16 18 O -0.49 -10.48 13.14 5.30 0.07 -10.41 16 19 C -0.11 -1.37 4.78 -104.82 -0.50 -1.87 16 20 C -0.07 -0.64 7.74 -39.20 -0.30 -0.94 16 21 C -0.12 -0.76 10.02 -39.62 -0.40 -1.16 16 22 C -0.08 -0.47 10.03 -39.53 -0.40 -0.86 16 23 C -0.13 -0.97 9.47 -39.45 -0.37 -1.34 16 24 C 0.18 2.04 6.71 -83.31 -0.56 1.48 16 25 N -0.33 -4.41 3.84 -10.32 -0.04 -4.45 16 26 C 0.01 0.09 10.92 -16.72 -0.18 -0.10 16 27 C -0.07 -0.80 11.86 -18.05 -0.21 -1.02 16 28 N -0.24 -3.93 12.33 30.09 0.37 -3.56 16 29 N -0.01 -0.12 9.66 60.35 0.58 0.46 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.82 8.03 -51.93 -0.42 0.41 16 32 H 0.07 0.61 5.15 -51.93 -0.27 0.34 16 33 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 34 H 0.10 2.28 7.19 -51.93 -0.37 1.90 16 35 H 0.08 1.93 6.91 -51.93 -0.36 1.57 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.83 7.43 -51.93 -0.39 1.45 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.14 1.22 7.80 -52.49 -0.41 0.81 16 41 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 43 H 0.14 0.58 6.86 -52.48 -0.36 0.22 16 44 H 0.19 0.76 7.19 -52.49 -0.38 0.39 16 45 H 0.19 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -39.19 373.00 -7.94 -47.14 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.88 Total: -1.74 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -3.17 Total: 3.51 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.44 Total: -62.28 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.19 -7.94 -47.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086003530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.393 kcal (2) G-P(sol) polarization free energy of solvation -39.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds