Wall clock time and date at job start Sat Apr 11 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34949 * 126.03873 * 2 1 4 4 C 1.35317 * 107.74232 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.03648 * 180.02562 * 4 3 2 6 6 H 1.09003 * 110.63834 * 356.85569 * 5 4 3 7 7 C 1.54320 * 110.87177 * 233.60844 * 5 4 3 8 8 N 1.47025 * 107.26998 * 219.37189 * 7 5 4 9 9 C 1.34781 * 125.64522 * 178.89595 * 8 7 5 10 10 O 1.21506 * 120.00274 * 359.97438 * 9 8 7 11 11 C 1.48168 * 119.99602 * 179.97438 * 9 8 7 12 12 C 1.39307 * 119.72379 * 179.97438 * 11 9 8 13 13 C 1.38592 * 119.06114 * 179.97438 * 12 11 9 14 14 C 1.38621 * 118.48540 * 359.97438 * 13 12 11 15 15 C 1.38555 * 119.35746 * 0.02562 * 14 13 12 16 16 N 1.31526 * 120.90184 * 359.73313 * 15 14 13 17 17 C 1.47423 * 108.70507 * 358.93887 * 8 7 5 18 18 C 1.54913 * 104.82827 * 24.12803 * 17 8 7 19 19 H 1.09005 * 111.03445 * 81.08304 * 18 17 8 20 20 N 1.46498 * 111.00111 * 204.91340 * 18 17 8 21 21 C 1.36935 * 120.00239 * 267.19610 * 20 18 17 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 C 1.39862 * 107.92621 * 0.26179 * 4 3 2 30 30 N 1.30839 * 108.20026 * 359.55895 * 29 4 3 31 31 H 1.08998 * 109.47301 * 89.99383 * 1 2 3 32 32 H 1.09006 * 109.46837 * 210.00007 * 1 2 3 33 33 H 1.09004 * 109.46689 * 329.99515 * 1 2 3 34 34 H 1.07999 * 126.12620 * 359.97438 * 3 2 1 35 35 H 1.08996 * 109.88430 * 338.78896 * 7 5 4 36 36 H 1.09000 * 109.88173 * 99.80071 * 7 5 4 37 37 H 1.08001 * 120.46816 * 0.02562 * 12 11 9 38 38 H 1.07998 * 120.75362 * 180.02562 * 13 12 11 39 39 H 1.07998 * 120.32175 * 179.97438 * 14 13 12 40 40 H 1.08001 * 119.55577 * 180.02562 * 15 14 13 41 41 H 1.09000 * 110.37135 * 265.29446 * 17 8 7 42 42 H 1.08997 * 110.36705 * 142.96424 * 17 8 7 43 43 H 0.97004 * 119.99747 * 87.20350 * 20 18 17 44 44 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 45 45 H 1.08002 * 125.90642 * 179.74042 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0006 5 6 4.7681 1.5451 -0.0002 6 1 4.4863 2.5967 -0.0554 7 6 5.7133 1.1715 -1.1614 8 7 7.0890 1.2605 -0.6503 9 6 8.2069 0.9895 -1.3527 10 8 8.1252 0.6368 -2.5126 11 6 9.5356 1.1217 -0.7104 12 6 10.6874 0.8396 -1.4415 13 6 11.9230 0.9683 -0.8272 14 6 11.9638 1.3754 0.4972 15 6 10.7779 1.6391 1.1636 16 7 9.6187 1.5133 0.5550 17 6 7.0430 1.6942 0.7579 18 6 5.6374 1.2750 1.2562 19 1 5.6167 0.2190 1.5259 20 7 5.2084 2.1098 2.3810 21 6 5.4543 1.7061 3.6662 22 1 5.9647 0.7724 3.8506 23 6 5.0474 2.4969 4.7320 24 7 4.4301 3.6374 4.5071 25 14 5.3834 1.9465 6.4852 26 1 4.2392 1.1383 6.9780 27 1 6.6201 1.1251 6.5177 28 1 5.5578 3.1385 7.3534 29 6 3.5347 -0.7321 -0.0070 30 7 2.2892 -1.1328 -0.0006 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.9282 2.1193 -0.0004 35 1 5.5068 0.1546 -1.4950 36 1 5.5771 1.8677 -1.9890 37 1 10.6184 0.5259 -2.4726 38 1 12.8335 0.7571 -1.3684 39 1 12.9106 1.4851 1.0051 40 1 10.8059 1.9568 2.1954 41 1 7.1627 2.7755 0.8260 42 1 7.8167 1.1888 1.3359 43 1 4.7502 2.9486 2.2153 44 1 4.2560 3.9235 3.5968 45 1 4.4054 -1.3712 -0.0130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086963421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:14 Heat of formation + Delta-G solvation = 95.364738 kcal Electronic energy + Delta-G solvation = -29428.628783 eV Core-core repulsion = 25448.144515 eV Total energy + Delta-G solvation = -3980.484268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.28647 -41.66093 -40.24851 -38.80176 -36.17305 -34.62638 -33.71267 -33.13496 -32.45381 -32.05805 -29.93966 -28.83346 -27.40629 -26.08126 -25.31438 -24.45488 -23.67126 -22.60461 -21.80875 -21.07882 -20.68385 -19.38569 -18.58714 -17.97385 -17.62945 -17.12486 -16.85394 -16.67436 -16.28670 -16.12190 -15.93780 -15.57092 -15.37225 -15.26163 -14.78702 -14.62865 -14.39472 -14.12578 -14.05311 -13.88045 -13.66532 -13.49624 -13.34682 -12.90642 -12.87224 -12.69639 -12.60103 -12.33832 -11.96319 -11.85414 -11.49064 -11.41028 -11.20746 -10.99090 -10.93663 -10.34761 -10.32409 -10.23611 -9.66949 -9.35500 -8.95149 -8.29973 -5.24052 -0.35215 0.27821 0.94340 1.61561 1.66034 1.68647 1.70767 1.74336 1.85084 1.91359 2.74293 2.87366 3.05109 3.43800 3.46796 3.64189 3.82463 3.88086 3.98567 3.99816 4.05085 4.07018 4.10906 4.17469 4.30301 4.38091 4.42721 4.43535 4.50720 4.54267 4.66594 4.72572 4.77669 4.79279 5.00661 5.02594 5.14307 5.15414 5.16358 5.30337 5.37983 5.65592 5.68619 5.69990 6.14038 6.37663 6.59116 6.70780 6.71094 7.04642 7.15844 8.05157 8.16853 9.21868 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007596 B = 0.004392 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3685.475092 B = 6373.506815 C = 9513.574462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.380 5.380 3 C 0.064 3.936 4 C -0.226 4.226 5 C -0.016 4.016 6 H 0.090 0.910 7 C 0.123 3.877 8 N -0.593 5.593 9 C 0.573 3.427 10 O -0.573 6.573 11 C 0.050 3.950 12 C -0.119 4.119 13 C -0.075 4.075 14 C -0.132 4.132 15 C 0.080 3.920 16 N -0.477 5.477 17 C 0.101 3.899 18 C 0.184 3.816 19 H 0.053 0.947 20 N -0.724 5.724 21 C -0.320 4.320 22 H 0.061 0.939 23 C -0.096 4.096 24 N -0.975 5.975 25 Si 1.121 2.879 26 H -0.292 1.292 27 H -0.274 1.274 28 H -0.293 1.293 29 C 0.047 3.953 30 N -0.329 5.329 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.197 0.803 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.148 0.852 38 H 0.181 0.819 39 H 0.180 0.820 40 H 0.177 0.823 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.364 0.636 44 H 0.246 0.754 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.449 -4.533 -11.475 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.162 5.162 3 C -0.083 4.083 4 C -0.238 4.238 5 C -0.037 4.037 6 H 0.108 0.892 7 C 0.001 3.999 8 N -0.324 5.324 9 C 0.362 3.638 10 O -0.453 6.453 11 C -0.087 4.087 12 C -0.140 4.140 13 C -0.101 4.101 14 C -0.152 4.152 15 C -0.080 4.080 16 N -0.189 5.189 17 C -0.025 4.025 18 C 0.072 3.928 19 H 0.071 0.929 20 N -0.364 5.364 21 C -0.451 4.451 22 H 0.079 0.921 23 C -0.288 4.288 24 N -0.623 5.623 25 Si 0.948 3.052 26 H -0.219 1.219 27 H -0.199 1.199 28 H -0.220 1.220 29 C -0.138 4.138 30 N -0.151 5.151 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.214 0.786 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.166 0.834 38 H 0.198 0.802 39 H 0.198 0.802 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.197 0.803 44 H 0.057 0.943 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.595 -5.390 -10.031 12.688 hybrid contribution 1.020 0.529 -1.953 2.266 sum 6.615 -4.861 -11.984 14.526 Atomic orbital electron populations 1.22170 0.72031 1.05616 1.04713 1.48720 1.07863 1.03194 1.56413 1.22685 0.90548 0.94399 1.00695 1.19708 0.94034 0.93398 1.16630 1.20583 0.90985 0.98467 0.93708 0.89181 1.21996 0.79540 1.02086 0.96314 1.48355 1.05708 1.64282 1.14010 1.18026 0.83540 0.77362 0.84884 1.90711 1.87102 1.50270 1.17245 1.20972 0.93613 1.02355 0.91716 1.22264 0.92261 0.97672 1.01807 1.22068 0.98030 0.94949 0.95048 1.22818 1.00864 0.96233 0.95269 1.23414 0.87429 0.95724 1.01386 1.67850 1.30768 1.11266 1.09055 1.23318 1.00621 0.99107 0.79424 1.21425 0.90756 0.94178 0.86395 0.92863 1.42238 1.69389 1.23361 1.01434 1.20286 1.34044 1.05385 0.85401 0.92079 1.26880 0.99493 0.95687 1.06702 1.70952 1.46501 1.23252 1.21633 0.82684 0.76283 0.74740 0.71511 1.21909 1.19921 1.21979 1.23794 0.95227 0.95057 0.99765 1.77210 1.02056 1.09760 1.26077 0.88892 0.89300 0.87498 0.78635 0.91054 0.90710 0.83418 0.80179 0.80231 0.80600 0.93101 0.88817 0.80335 0.94326 0.80125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.68 11.47 127.77 1.47 3.15 16 2 N -0.38 -10.75 4.01 -369.55 -1.48 -12.23 16 3 C 0.06 1.83 11.40 83.54 0.95 2.78 16 4 C -0.23 -7.29 4.96 -20.14 -0.10 -7.39 16 5 C -0.02 -0.54 3.00 -10.35 -0.03 -0.57 16 6 H 0.09 2.87 8.00 -2.39 -0.02 2.85 16 7 C 0.12 3.89 6.43 86.73 0.56 4.45 16 8 N -0.59 -20.57 3.33 -814.83 -2.71 -23.28 16 9 C 0.57 20.20 7.84 86.88 0.68 20.88 16 10 O -0.57 -21.98 16.65 -3.74 -0.06 -22.05 16 11 C 0.05 1.53 6.72 41.91 0.28 1.81 16 12 C -0.12 -2.75 9.63 22.61 0.22 -2.53 16 13 C -0.08 -1.14 10.17 22.45 0.23 -0.91 16 14 C -0.13 -1.94 10.11 22.44 0.23 -1.71 16 15 C 0.08 1.76 11.18 84.81 0.95 2.71 16 16 N -0.48 -14.41 6.60 -184.91 -1.22 -15.63 16 17 C 0.10 3.78 5.63 86.86 0.49 4.27 16 18 C 0.18 7.26 3.14 46.38 0.15 7.41 16 19 H 0.05 2.27 7.65 -2.38 -0.02 2.25 16 20 N -0.72 -34.72 5.24 -316.37 -1.66 -36.38 16 21 C -0.32 -17.36 9.96 84.03 0.84 -16.52 16 22 H 0.06 3.32 7.83 -2.91 -0.02 3.29 16 23 C -0.10 -5.40 5.50 84.86 0.47 -4.93 16 24 N -0.98 -58.89 13.70 21.65 0.30 -58.60 16 25 Si 1.12 51.36 29.92 68.60 2.05 53.42 16 26 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 29 C 0.05 1.55 10.75 85.23 0.92 2.47 16 30 N -0.33 -11.07 12.58 -57.03 -0.72 -11.79 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.20 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.07 2.25 7.23 -2.39 -0.02 2.23 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.15 3.25 7.64 -2.91 -0.02 3.22 16 38 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 40 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.09 3.69 5.90 -2.39 -0.01 3.68 16 43 H 0.36 18.05 6.60 -92.71 -0.61 17.43 16 44 H 0.25 14.69 6.77 -92.71 -0.63 14.06 16 45 H 0.18 5.53 8.06 -2.91 -0.02 5.51 16 Total: -1.00 -77.55 379.83 3.33 -74.21 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: 0.55 Total: 36.95 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 8.28 Total: 15.37 kcal Atomic # 7 Polarization: -150.42 SS G_CDS: -7.49 Total: -157.91 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.06 Total: -22.05 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.42 kcal Total: -77.55 3.33 -74.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086963421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.580 kcal (2) G-P(sol) polarization free energy of solvation -77.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds