Wall clock time and date at job start Sat Apr 11 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36170 * 126.23739 * 2 1 4 4 N 1.30054 * 110.11317 * 180.02562 * 3 2 1 5 5 C 1.35780 * 109.43557 * 0.02562 * 4 3 2 6 6 C 1.39489 * 133.74868 * 180.32731 * 5 4 3 7 7 C 1.39666 * 118.05416 * 180.17405 * 6 5 4 8 8 C 1.47688 * 120.38051 * 179.74058 * 7 6 5 9 9 O 1.21572 * 120.00441 * 359.72967 * 8 7 6 10 10 N 1.34778 * 119.99796 * 179.72142 * 8 7 6 11 11 C 1.46499 * 119.99921 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.68453 * 37.00247 * 11 10 8 13 13 C 1.55870 * 110.10242 * 160.86891 * 11 10 8 14 14 C 1.55840 * 103.53320 * 118.85859 * 13 11 10 15 15 H 1.08997 * 115.56031 * 158.20791 * 14 13 11 16 16 C 1.55838 * 105.74508 * 287.39194 * 14 13 11 17 17 C 1.55868 * 102.97610 * 71.12983 * 16 14 13 18 18 C 1.55850 * 110.62699 * 274.01984 * 11 10 8 19 19 H 1.08998 * 115.56377 * 82.69724 * 18 11 10 20 20 N 1.50240 * 101.04759 * 32.34224 * 14 13 11 21 21 C 1.36929 * 130.84289 * 126.01449 * 20 14 13 22 22 H 1.08008 * 120.00137 * 180.02562 * 21 20 14 23 23 C 1.38811 * 120.00010 * 0.02562 * 21 20 14 24 24 N 1.31612 * 120.00213 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00136 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47206 * 90.00104 * 25 23 21 27 27 H 1.48497 * 109.47235 * 209.99839 * 25 23 21 28 28 H 1.48504 * 109.47275 * 330.00219 * 25 23 21 29 29 C 1.39981 * 119.23324 * 359.46483 * 7 6 5 30 30 N 1.31382 * 121.16274 * 0.27891 * 29 7 6 31 31 C 1.32557 * 121.79087 * 359.97438 * 30 29 7 32 32 H 1.09000 * 109.46725 * 269.99764 * 1 2 3 33 33 H 1.09002 * 109.46740 * 29.98940 * 1 2 3 34 34 H 1.08994 * 109.47441 * 149.99226 * 1 2 3 35 35 H 1.08007 * 124.94601 * 359.97438 * 3 2 1 36 36 H 1.07998 * 120.96866 * 359.91787 * 6 5 4 37 37 H 0.96993 * 119.99991 * 0.02562 * 10 8 7 38 38 H 1.09003 * 111.09846 * 0.09786 * 13 11 10 39 39 H 1.09001 * 110.21092 * 237.20613 * 13 11 10 40 40 H 1.08998 * 110.62880 * 190.50093 * 16 14 13 41 41 H 1.09003 * 110.62704 * 313.35351 * 16 14 13 42 42 H 1.08994 * 111.10374 * 242.11586 * 17 16 14 43 43 H 1.08995 * 110.07231 * 119.15123 * 17 16 14 44 44 H 0.97004 * 120.00626 * 180.02562 * 24 23 21 45 45 H 1.08004 * 119.41874 * 180.29882 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.0983 0.0000 4 7 3.5193 0.7371 -0.0005 5 6 3.5978 -0.6184 -0.0015 6 6 4.6594 -1.5232 0.0034 7 6 4.3599 -2.8873 -0.0034 8 6 5.4442 -3.8901 -0.0045 9 8 6.6054 -3.5299 -0.0044 10 7 5.1464 -5.2045 -0.0053 11 6 6.2220 -6.1992 -0.0058 12 1 7.0574 -5.8632 0.6082 13 6 5.6762 -7.5786 0.4729 14 6 5.9189 -8.5116 -0.7514 15 1 5.9592 -9.5780 -0.5294 16 6 4.8687 -8.0868 -1.8216 17 6 5.3938 -6.6978 -2.2951 18 6 6.6947 -6.4960 -1.4609 19 1 7.4141 -5.7897 -1.8750 20 7 7.1723 -7.9140 -1.3249 21 6 8.3788 -8.4855 -1.6296 22 1 9.1739 -7.8816 -2.0414 23 6 8.5800 -9.8412 -1.4092 24 7 7.6110 -10.5774 -0.9078 25 14 10.2260 -10.6208 -1.8241 26 1 11.1201 -10.5492 -0.6406 27 1 10.0194 -12.0417 -2.2030 28 1 10.8473 -9.8913 -2.9587 29 6 3.0202 -3.2931 -0.0033 30 7 2.0437 -2.4142 -0.0024 31 6 2.2783 -1.1096 -0.0011 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8901 -0.5137 34 1 -0.3634 -0.8898 -0.5139 35 1 1.9216 2.1207 -0.0004 36 1 5.6830 -1.1788 0.0080 37 1 4.2201 -5.4919 -0.0057 38 1 4.6131 -7.5203 0.7065 39 1 6.2397 -7.9266 1.3387 40 1 4.8419 -8.8061 -2.6401 41 1 3.8816 -7.9831 -1.3709 42 1 4.6722 -5.9104 -2.0776 43 1 5.6217 -6.7274 -3.3606 44 1 7.7516 -11.5246 -0.7535 45 1 2.7852 -4.3473 -0.0036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095861372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:25 Heat of formation + Delta-G solvation = 113.697266 kcal Electronic energy + Delta-G solvation = -29271.159279 eV Core-core repulsion = 25291.469969 eV Total energy + Delta-G solvation = -3979.689310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.71211 -40.18022 -38.85522 -37.73662 -34.91286 -34.02189 -32.40943 -32.08193 -30.28704 -29.17910 -28.95924 -27.88159 -27.30104 -24.70505 -24.14639 -23.76734 -21.47606 -21.26270 -20.79777 -19.52933 -18.65479 -18.23213 -18.04865 -17.21976 -16.71185 -16.52543 -16.07519 -15.18087 -15.06314 -14.79384 -14.58220 -14.27017 -13.98614 -13.94194 -13.67865 -13.61032 -13.27894 -13.16882 -12.71076 -12.31322 -12.23780 -11.74963 -11.48503 -11.31742 -11.10214 -11.02198 -10.89561 -10.87977 -10.82348 -10.19579 -10.08726 -10.02221 -9.76916 -9.46408 -9.40281 -9.23371 -9.04781 -8.92848 -8.91811 -8.50617 -6.89888 -5.71205 -3.08960 0.46330 0.57827 1.90613 2.37354 2.92001 3.24297 3.41621 3.46826 3.48257 3.69811 3.71720 3.92510 4.14444 4.45613 4.49396 4.56197 4.65519 4.68652 4.77865 4.95784 5.11816 5.21943 5.40392 5.48020 5.53073 5.76272 5.81880 5.85043 5.87002 5.94590 6.07764 6.12961 6.15846 6.30512 6.34521 6.48072 6.54980 6.60674 6.66406 6.81381 6.97531 7.01002 7.27921 7.30054 7.44790 7.53918 7.71583 7.82308 8.18247 8.41755 9.12128 9.74692 10.54883 11.38361 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.002332 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.785344 B =12003.505509 C =12520.286173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.486 5.486 3 C 0.270 3.730 4 N -0.479 5.479 5 C -0.009 4.009 6 C 0.047 3.953 7 C -0.193 4.193 8 C 0.562 3.438 9 O -0.534 6.534 10 N -0.705 5.705 11 C 0.129 3.871 12 H 0.087 0.913 13 C -0.140 4.140 14 C 0.153 3.847 15 H 0.154 0.846 16 C -0.136 4.136 17 C -0.130 4.130 18 C 0.127 3.873 19 H 0.085 0.915 20 N -0.590 5.590 21 C -0.208 4.208 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.924 5.924 25 Si 0.916 3.084 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.174 3.826 30 N -0.484 5.484 31 C 0.252 3.748 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.224 0.776 36 H 0.156 0.844 37 H 0.394 0.606 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.253 0.747 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.324 19.470 3.023 26.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.178 5.178 3 C -0.017 4.017 4 N -0.197 5.197 5 C -0.128 4.128 6 C 0.019 3.981 7 C -0.201 4.201 8 C 0.348 3.652 9 O -0.412 6.412 10 N -0.356 5.356 11 C 0.023 3.977 12 H 0.105 0.895 13 C -0.180 4.180 14 C 0.046 3.954 15 H 0.171 0.829 16 C -0.175 4.175 17 C -0.170 4.170 18 C 0.018 3.982 19 H 0.103 0.897 20 N -0.310 5.310 21 C -0.336 4.336 22 H 0.097 0.903 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.747 3.253 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.004 3.996 30 N -0.197 5.197 31 C 0.017 3.983 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.240 0.760 36 H 0.174 0.826 37 H 0.229 0.771 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.565 19.761 2.990 26.608 hybrid contribution 0.276 -0.594 -0.228 0.694 sum -17.290 19.167 2.762 25.960 Atomic orbital electron populations 1.22056 0.75107 1.05065 1.03881 1.45061 1.07902 1.04572 1.60305 1.25496 0.84836 0.93107 0.98226 1.70497 1.18283 1.10344 1.20615 1.19551 0.92984 0.91475 1.08823 1.20876 0.99126 0.89615 0.88499 1.20796 0.95178 0.94365 1.09800 1.17780 0.87878 0.82426 0.77152 1.90799 1.20068 1.80392 1.49910 1.46167 1.10440 1.05264 1.73723 1.22921 0.88483 0.86606 0.99668 0.89533 1.23466 0.98461 0.94905 1.01127 1.23747 0.83402 1.00099 0.88137 0.82936 1.23202 0.97571 0.96189 1.00564 1.23072 0.97823 0.96683 0.99415 1.23204 0.93608 0.88606 0.92733 0.89654 1.46485 1.10481 1.01864 1.72214 1.19067 0.88284 0.91771 1.34517 0.90298 1.24690 0.98132 0.96036 1.01949 1.69430 1.31051 1.06128 1.50634 0.86031 0.82855 0.78436 0.77947 1.21663 1.21729 1.20774 1.22748 0.86541 0.98356 0.91909 1.66355 1.37267 0.99066 1.16965 1.19100 0.89171 0.88133 1.01872 0.90442 0.89126 0.89068 0.76016 0.82626 0.77096 0.92607 0.91544 0.92494 0.93712 0.93054 0.93087 0.93593 0.81326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.18 59.85 0.67 0.97 16 2 N -0.49 -3.89 3.19 -124.99 -0.40 -4.29 16 3 C 0.27 1.98 12.50 -89.71 -1.12 0.86 16 4 N -0.48 -5.55 11.29 -12.02 -0.14 -5.68 16 5 C -0.01 -0.11 7.23 -84.69 -0.61 -0.72 16 6 C 0.05 0.62 9.75 -38.58 -0.38 0.24 16 7 C -0.19 -2.48 5.89 -104.85 -0.62 -3.10 16 8 C 0.56 8.64 7.77 -12.40 -0.10 8.54 16 9 O -0.53 -10.27 16.13 5.30 0.09 -10.18 16 10 N -0.71 -10.09 3.62 -51.85 -0.19 -10.28 16 11 C 0.13 2.35 3.17 -64.88 -0.21 2.14 16 12 H 0.09 1.77 7.71 -51.93 -0.40 1.37 16 13 C -0.14 -2.56 6.21 -23.68 -0.15 -2.71 16 14 C 0.15 3.36 4.67 -62.81 -0.29 3.07 16 15 H 0.15 3.86 5.52 -51.93 -0.29 3.58 16 16 C -0.14 -2.56 6.53 -23.68 -0.15 -2.71 16 17 C -0.13 -2.37 6.37 -23.68 -0.15 -2.52 16 18 C 0.13 2.64 5.30 -62.79 -0.33 2.31 16 19 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 20 N -0.59 -14.53 2.97 -145.81 -0.43 -14.96 16 21 C -0.21 -5.72 10.59 -15.06 -0.16 -5.88 16 22 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.92 -26.02 10.46 55.49 0.58 -25.44 16 25 Si 0.92 22.04 29.55 -169.99 -5.02 17.01 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 C 0.17 1.90 10.69 -17.09 -0.18 1.72 16 30 N -0.48 -5.65 10.37 -11.96 -0.12 -5.77 16 31 C 0.25 2.93 7.99 -155.63 -1.24 1.68 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.22 0.43 8.06 -52.48 -0.42 0.01 16 36 H 0.16 2.08 7.72 -52.49 -0.41 1.68 16 37 H 0.39 4.45 6.06 -40.82 -0.25 4.20 16 38 H 0.06 0.83 7.38 -51.93 -0.38 0.45 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 42 H 0.05 0.79 6.55 -51.93 -0.34 0.45 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.17 1.36 6.39 -52.48 -0.34 1.02 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -34.75 366.61 -10.97 -45.72 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.73 Total: 4.91 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -5.12 Total: 3.44 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -0.70 Total: -66.42 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.75 -10.97 -45.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095861372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.417 kcal (2) G-P(sol) polarization free energy of solvation -34.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds