Wall clock time and date at job start Sat Apr 11 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36170 * 126.23739 * 2 1 4 4 N 1.30054 * 110.11317 * 180.02562 * 3 2 1 5 5 C 1.35780 * 109.43557 * 0.02562 * 4 3 2 6 6 C 1.39489 * 133.74868 * 180.32731 * 5 4 3 7 7 C 1.39666 * 118.05416 * 180.17405 * 6 5 4 8 8 C 1.47688 * 120.38051 * 179.74058 * 7 6 5 9 9 O 1.21572 * 120.00441 * 359.72967 * 8 7 6 10 10 N 1.34778 * 119.99796 * 179.72142 * 8 7 6 11 11 C 1.46499 * 119.99921 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.68453 * 37.00247 * 11 10 8 13 13 C 1.55870 * 110.10242 * 160.86891 * 11 10 8 14 14 C 1.55840 * 103.53320 * 118.85859 * 13 11 10 15 15 H 1.08997 * 115.56031 * 158.20791 * 14 13 11 16 16 C 1.55838 * 105.74508 * 287.39194 * 14 13 11 17 17 C 1.55868 * 102.97610 * 71.12983 * 16 14 13 18 18 C 1.55850 * 110.62699 * 274.01984 * 11 10 8 19 19 H 1.08998 * 115.56377 * 82.69724 * 18 11 10 20 20 N 1.50240 * 101.04759 * 32.34224 * 14 13 11 21 21 C 1.36929 * 130.84289 * 126.01449 * 20 14 13 22 22 H 1.08008 * 120.00137 * 180.02562 * 21 20 14 23 23 C 1.38811 * 120.00010 * 0.02562 * 21 20 14 24 24 N 1.31612 * 120.00213 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00136 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47206 * 90.00104 * 25 23 21 27 27 H 1.48497 * 109.47235 * 209.99839 * 25 23 21 28 28 H 1.48504 * 109.47275 * 330.00219 * 25 23 21 29 29 C 1.39981 * 119.23324 * 359.46483 * 7 6 5 30 30 N 1.31382 * 121.16274 * 0.27891 * 29 7 6 31 31 C 1.32557 * 121.79087 * 359.97438 * 30 29 7 32 32 H 1.09000 * 109.46725 * 269.99764 * 1 2 3 33 33 H 1.09002 * 109.46740 * 29.98940 * 1 2 3 34 34 H 1.08994 * 109.47441 * 149.99226 * 1 2 3 35 35 H 1.08007 * 124.94601 * 359.97438 * 3 2 1 36 36 H 1.07998 * 120.96866 * 359.91787 * 6 5 4 37 37 H 0.96993 * 119.99991 * 0.02562 * 10 8 7 38 38 H 1.09003 * 111.09846 * 0.09786 * 13 11 10 39 39 H 1.09001 * 110.21092 * 237.20613 * 13 11 10 40 40 H 1.08998 * 110.62880 * 190.50093 * 16 14 13 41 41 H 1.09003 * 110.62704 * 313.35351 * 16 14 13 42 42 H 1.08994 * 111.10374 * 242.11586 * 17 16 14 43 43 H 1.08995 * 110.07231 * 119.15123 * 17 16 14 44 44 H 0.97004 * 120.00626 * 180.02562 * 24 23 21 45 45 H 1.08004 * 119.41874 * 180.29882 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.0983 0.0000 4 7 3.5193 0.7371 -0.0005 5 6 3.5978 -0.6184 -0.0015 6 6 4.6594 -1.5232 0.0034 7 6 4.3599 -2.8873 -0.0034 8 6 5.4442 -3.8901 -0.0045 9 8 6.6054 -3.5299 -0.0044 10 7 5.1464 -5.2045 -0.0053 11 6 6.2220 -6.1992 -0.0058 12 1 7.0574 -5.8632 0.6082 13 6 5.6762 -7.5786 0.4729 14 6 5.9189 -8.5116 -0.7514 15 1 5.9592 -9.5780 -0.5294 16 6 4.8687 -8.0868 -1.8216 17 6 5.3938 -6.6978 -2.2951 18 6 6.6947 -6.4960 -1.4609 19 1 7.4141 -5.7897 -1.8750 20 7 7.1723 -7.9140 -1.3249 21 6 8.3788 -8.4855 -1.6296 22 1 9.1739 -7.8816 -2.0414 23 6 8.5800 -9.8412 -1.4092 24 7 7.6110 -10.5774 -0.9078 25 14 10.2260 -10.6208 -1.8241 26 1 11.1201 -10.5492 -0.6406 27 1 10.0194 -12.0417 -2.2030 28 1 10.8473 -9.8913 -2.9587 29 6 3.0202 -3.2931 -0.0033 30 7 2.0437 -2.4142 -0.0024 31 6 2.2783 -1.1096 -0.0011 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8901 -0.5137 34 1 -0.3634 -0.8898 -0.5139 35 1 1.9216 2.1207 -0.0004 36 1 5.6830 -1.1788 0.0080 37 1 4.2201 -5.4919 -0.0057 38 1 4.6131 -7.5203 0.7065 39 1 6.2397 -7.9266 1.3387 40 1 4.8419 -8.8061 -2.6401 41 1 3.8816 -7.9831 -1.3709 42 1 4.6722 -5.9104 -2.0776 43 1 5.6217 -6.7274 -3.3606 44 1 7.7516 -11.5246 -0.7535 45 1 2.7852 -4.3473 -0.0036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095861372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:24 Heat of formation + Delta-G solvation = 92.236192 kcal Electronic energy + Delta-G solvation = -29272.089901 eV Core-core repulsion = 25291.469969 eV Total energy + Delta-G solvation = -3980.619932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.44934 -41.52833 -40.13342 -38.84709 -35.64139 -35.45664 -34.24251 -33.02110 -31.25888 -30.93876 -30.46475 -29.14338 -28.06795 -26.23608 -25.22102 -24.83686 -22.90061 -22.13353 -21.92610 -21.21541 -20.18030 -19.31894 -18.83319 -18.74325 -17.87816 -17.20062 -17.11297 -16.77869 -16.44339 -16.29436 -15.89308 -15.39915 -15.32261 -14.93103 -14.68144 -14.42149 -14.19260 -14.04381 -13.87058 -13.49640 -13.44676 -13.40691 -13.15945 -12.87954 -12.76421 -12.59400 -12.33798 -12.10355 -11.98128 -11.86778 -11.81441 -11.50141 -11.27835 -11.09374 -10.97014 -10.78867 -10.35587 -10.08286 -9.77592 -9.70322 -8.83086 -7.77604 -5.16370 -0.44064 -0.25829 1.31871 1.47064 1.48241 1.56201 1.66905 1.84256 2.04306 2.51173 2.74182 2.95521 3.28193 3.35818 3.51847 3.53322 3.65322 3.77947 3.91948 4.02779 4.08958 4.13797 4.19692 4.33336 4.41541 4.46877 4.52152 4.64783 4.75148 4.76966 4.77532 4.84570 4.86641 5.01195 5.03688 5.10113 5.19173 5.23080 5.34784 5.36972 5.50234 5.56585 5.77394 5.91209 5.91667 6.30935 6.55493 6.61782 6.63719 7.08112 7.22714 7.71402 8.57512 9.28982 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.002332 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.785344 B =12003.505509 C =12520.286173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.482 5.482 3 C 0.295 3.705 4 N -0.526 5.526 5 C -0.028 4.028 6 C 0.030 3.970 7 C -0.198 4.198 8 C 0.567 3.433 9 O -0.580 6.580 10 N -0.688 5.688 11 C 0.148 3.852 12 H 0.058 0.942 13 C -0.124 4.124 14 C 0.137 3.863 15 H 0.120 0.880 16 C -0.124 4.124 17 C -0.116 4.116 18 C 0.116 3.884 19 H 0.063 0.937 20 N -0.618 5.618 21 C -0.223 4.223 22 H 0.069 0.931 23 C -0.063 4.063 24 N -0.943 5.943 25 Si 0.974 3.026 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.278 1.278 29 C 0.179 3.821 30 N -0.485 5.485 31 C 0.241 3.759 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.084 0.916 35 H 0.277 0.723 36 H 0.140 0.860 37 H 0.414 0.586 38 H 0.103 0.897 39 H 0.048 0.952 40 H 0.035 0.965 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.249 0.751 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.181 21.397 3.209 30.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.173 5.173 3 C 0.009 3.991 4 N -0.245 5.245 5 C -0.148 4.148 6 C 0.002 3.998 7 C -0.206 4.206 8 C 0.355 3.645 9 O -0.460 6.460 10 N -0.340 5.340 11 C 0.041 3.959 12 H 0.076 0.924 13 C -0.164 4.164 14 C 0.031 3.969 15 H 0.137 0.863 16 C -0.163 4.163 17 C -0.156 4.156 18 C 0.008 3.992 19 H 0.082 0.918 20 N -0.340 5.340 21 C -0.352 4.352 22 H 0.087 0.913 23 C -0.256 4.256 24 N -0.592 5.592 25 Si 0.803 3.197 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.203 1.203 29 C 0.010 3.990 30 N -0.198 5.198 31 C 0.004 3.996 32 H 0.108 0.892 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.293 0.707 36 H 0.158 0.842 37 H 0.254 0.746 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -21.512 21.720 3.178 30.734 hybrid contribution 1.390 -0.989 -0.279 1.729 sum -20.122 20.731 2.899 29.036 Atomic orbital electron populations 1.22409 0.72326 1.06632 1.05210 1.45461 1.09456 1.03439 1.58964 1.26606 0.83562 0.94763 0.94188 1.70486 1.20915 1.09793 1.23348 1.19689 0.93420 0.92302 1.09367 1.20862 0.98944 0.90437 0.89558 1.20490 0.95205 0.93256 1.11664 1.18115 0.87799 0.82820 0.75784 1.90785 1.22269 1.81098 1.51895 1.45824 1.10541 1.04280 1.73387 1.22355 0.88876 0.87457 0.97227 0.92393 1.23301 1.01013 0.93353 0.98697 1.23686 0.83468 0.99142 0.90566 0.86269 1.23098 0.98769 0.95517 0.98965 1.22981 0.96920 0.97518 0.98150 1.23342 0.94418 0.86604 0.94794 0.91840 1.46742 1.10567 1.03806 1.72930 1.19279 0.89573 0.92197 1.34161 0.91304 1.25376 1.01061 0.96486 1.02664 1.69656 1.32193 1.05825 1.51551 0.85137 0.79565 0.77367 0.77603 1.21689 1.21726 1.20311 1.23151 0.85283 0.99730 0.90850 1.66478 1.37045 0.99168 1.17077 1.19432 0.89600 0.88893 1.01677 0.89191 0.85383 0.89764 0.70743 0.84247 0.74647 0.87928 0.93360 0.94577 0.89093 0.89371 0.94222 0.94148 0.78111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 11.18 127.77 1.43 1.67 16 2 N -0.48 -6.07 3.19 -549.35 -1.75 -7.82 16 3 C 0.29 3.31 12.50 180.03 2.25 5.56 16 4 N -0.53 -11.48 11.29 -191.93 -2.17 -13.65 16 5 C -0.03 -0.71 7.23 39.46 0.29 -0.42 16 6 C 0.03 0.81 9.75 22.92 0.22 1.03 16 7 C -0.20 -4.93 5.89 -20.01 -0.12 -5.05 16 8 C 0.57 17.19 7.77 86.74 0.67 17.87 16 9 O -0.58 -23.12 16.13 -3.94 -0.06 -23.19 16 10 N -0.69 -18.34 3.62 -436.23 -1.58 -19.92 16 11 C 0.15 5.33 3.17 46.97 0.15 5.48 16 12 H 0.06 2.45 7.71 -2.39 -0.02 2.43 16 13 C -0.12 -4.38 6.21 32.57 0.20 -4.18 16 14 C 0.14 6.02 4.67 46.22 0.22 6.24 16 15 H 0.12 6.16 5.52 -2.39 -0.01 6.15 16 16 C -0.12 -4.43 6.53 32.57 0.21 -4.21 16 17 C -0.12 -4.04 6.37 32.57 0.21 -3.83 16 18 C 0.12 4.89 5.30 46.23 0.24 5.14 16 19 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 20 N -0.62 -31.31 2.97 -615.23 -1.83 -33.14 16 21 C -0.22 -12.72 10.59 84.03 0.89 -11.83 16 22 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 23 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 24 N -0.94 -54.66 10.46 21.65 0.23 -54.43 16 25 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 29 C 0.18 3.45 10.69 85.18 0.91 4.36 16 30 N -0.49 -10.04 10.37 -191.76 -1.99 -12.03 16 31 C 0.24 5.07 7.99 133.91 1.07 6.14 16 32 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.28 -0.42 8.06 -2.91 -0.02 -0.44 16 36 H 0.14 4.07 7.72 -2.91 -0.02 4.04 16 37 H 0.41 7.60 6.06 -92.71 -0.56 7.04 16 38 H 0.10 2.64 7.38 -2.39 -0.02 2.62 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 2.40 7.86 -2.39 -0.02 2.39 16 42 H 0.09 2.40 6.55 -2.39 -0.02 2.38 16 43 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 45 H 0.20 2.31 6.39 -2.91 -0.02 2.29 16 Total: -1.00 -82.07 366.61 2.67 -79.40 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.48 Total: 15.31 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 9.31 Total: 20.85 kcal Atomic # 7 Polarization: -131.90 SS G_CDS: -9.09 Total: -140.99 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.06 Total: -23.19 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -82.07 2.67 -79.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095861372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.635 kcal (2) G-P(sol) polarization free energy of solvation -82.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds