Wall clock time and date at job start Sat Apr 11 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35991 * 126.29116 * 2 1 4 4 N 1.30219 * 110.18052 * 180.02562 * 3 2 1 5 5 C 1.35426 * 109.57378 * 359.77389 * 4 3 2 6 6 C 1.39903 * 133.81089 * 179.97438 * 5 4 3 7 7 C 1.36991 * 118.35889 * 180.02562 * 6 5 4 8 8 C 1.39726 * 119.59946 * 0.02562 * 7 6 5 9 9 C 1.47978 * 119.42622 * 179.97438 * 8 7 6 10 10 O 1.21540 * 120.00049 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99726 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99545 * 180.02562 * 11 9 8 13 13 H 1.08994 * 110.56250 * 33.09843 * 12 11 9 14 14 C 1.54852 * 110.62733 * 156.00393 * 12 11 9 15 15 C 1.55845 * 103.44987 * 118.48569 * 14 12 11 16 16 H 1.08997 * 115.56233 * 158.81282 * 15 14 12 17 17 C 1.55848 * 105.06389 * 288.18032 * 15 14 12 18 18 C 1.54848 * 103.44526 * 71.81953 * 17 15 14 19 19 C 1.55840 * 103.44726 * 0.02562 * 18 17 15 20 20 H 1.09005 * 116.12496 * 159.14290 * 19 18 17 21 21 N 1.50236 * 101.05222 * 32.93889 * 19 18 17 22 22 C 1.36929 * 130.84285 * 126.03187 * 21 19 18 23 23 H 1.08005 * 119.99863 * 359.97362 * 22 21 19 24 24 C 1.38814 * 120.00536 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99696 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00530 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46855 * 89.99654 * 26 24 22 28 28 H 1.48497 * 109.47090 * 209.99752 * 26 24 22 29 29 H 1.48499 * 109.46840 * 329.99977 * 26 24 22 30 30 N 1.32653 * 121.14692 * 0.02562 * 8 7 6 31 31 C 1.31884 * 121.36425 * 359.97438 * 30 8 7 32 32 H 1.08997 * 109.47540 * 270.41696 * 1 2 3 33 33 H 1.09001 * 109.46978 * 30.42000 * 1 2 3 34 34 H 1.09002 * 109.46815 * 150.41384 * 1 2 3 35 35 H 1.08006 * 124.91011 * 359.78920 * 3 2 1 36 36 H 1.07996 * 120.81835 * 0.02562 * 6 5 4 37 37 H 1.08001 * 120.19824 * 180.02562 * 7 6 5 38 38 H 0.96999 * 120.00606 * 0.02562 * 11 9 8 39 39 H 1.09000 * 110.62587 * 236.98009 * 14 12 11 40 40 H 1.09010 * 110.62320 * 359.83748 * 14 12 11 41 41 H 1.08998 * 110.62301 * 190.31134 * 17 15 14 42 42 H 1.09005 * 110.62402 * 313.33144 * 17 15 14 43 43 H 1.09003 * 110.62601 * 241.50296 * 18 17 15 44 44 H 1.09008 * 110.75774 * 118.55921 * 18 17 15 45 45 H 0.96999 * 119.99897 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2699 1.0961 0.0000 4 7 3.5210 0.7348 -0.0005 5 6 3.6028 -0.6170 0.0041 6 6 4.6690 -1.5228 0.0053 7 6 4.3845 -2.8628 0.0101 8 6 3.0527 -3.2855 0.0130 9 6 2.7497 -4.7340 0.0176 10 8 3.6555 -5.5443 0.0192 11 7 1.4692 -5.1545 0.0210 12 6 1.1693 -6.5885 0.0261 13 1 1.9286 -7.1364 0.5839 14 6 -0.2374 -6.8495 0.6186 15 6 -1.0099 -7.5138 -0.5607 16 1 -1.8844 -8.1002 -0.2791 17 6 -1.2550 -6.3635 -1.5834 18 6 0.1517 -6.1026 -2.1758 19 6 1.0551 -7.1311 -1.4310 20 1 1.9991 -7.3801 -1.9157 21 7 0.0959 -8.2716 -1.2399 22 6 0.1981 -9.5941 -1.5797 23 1 1.0879 -9.9580 -2.0719 24 6 -0.8419 -10.4672 -1.2915 25 7 -1.9260 -10.0239 -0.6911 26 14 -0.7021 -12.2716 -1.7543 27 1 -0.0889 -13.0247 -0.6309 28 1 -2.0545 -12.8166 -2.0358 29 1 0.1481 -12.4078 -2.9642 30 7 2.0552 -2.4110 0.0108 31 6 2.2815 -1.1117 0.0062 32 1 -0.3634 0.0075 1.0276 33 1 -0.3633 0.8862 -0.5204 34 1 -0.3633 -0.8937 -0.5074 35 1 1.9219 2.1186 -0.0033 36 1 5.6912 -1.1741 0.0025 37 1 5.1847 -3.5881 0.0115 38 1 0.7463 -4.5078 0.0201 39 1 -0.1760 -7.5291 1.4686 40 1 -0.7107 -5.9122 0.9113 41 1 -1.9466 -6.6836 -2.3627 42 1 -1.6298 -5.4736 -1.0776 43 1 0.4745 -5.0832 -1.9640 44 1 0.1599 -6.2914 -3.2493 45 1 -2.6529 -10.6339 -0.4901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096006598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:31 Heat of formation + Delta-G solvation = 114.116420 kcal Electronic energy + Delta-G solvation = -29597.622502 eV Core-core repulsion = 25617.951368 eV Total energy + Delta-G solvation = -3979.671134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.67898 -40.18756 -38.94856 -37.64392 -34.91967 -33.96852 -32.42231 -32.05386 -30.36993 -29.23614 -28.98513 -27.56580 -27.51377 -25.10065 -24.12981 -23.30534 -21.49359 -21.16364 -20.82609 -19.55782 -18.64454 -18.11888 -18.04634 -17.31925 -16.86347 -16.50020 -15.60174 -15.19717 -14.93936 -14.89423 -14.78505 -14.29451 -13.99774 -13.91046 -13.64749 -13.51573 -13.23155 -12.97674 -12.56820 -12.29499 -12.17242 -11.74825 -11.48791 -11.32857 -11.15478 -11.03797 -10.90394 -10.88374 -10.82475 -10.20752 -10.13308 -10.07823 -9.83074 -9.46859 -9.35612 -9.23036 -9.05754 -8.92536 -8.84510 -8.46958 -6.90695 -5.72111 -3.09847 0.20979 0.97324 1.92505 2.23541 2.93513 3.27588 3.40898 3.45972 3.47441 3.69074 3.76366 3.88948 4.19127 4.44057 4.49759 4.66070 4.75095 4.78832 4.96814 5.10526 5.22712 5.27857 5.39198 5.56371 5.58510 5.78462 5.82155 5.84211 5.86751 5.98708 6.08204 6.14319 6.26766 6.32769 6.34970 6.49546 6.54693 6.62632 6.69192 6.81638 6.96945 7.00288 7.27042 7.31579 7.37208 7.53205 7.76206 7.87086 8.17382 8.42367 9.11157 9.73718 10.54118 11.37587 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023259 B = 0.002640 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.568373 B =10604.115993 C =11404.935043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.484 5.484 3 C 0.279 3.721 4 N -0.492 5.492 5 C 0.019 3.981 6 C -0.028 4.028 7 C -0.126 4.126 8 C 0.127 3.873 9 C 0.566 3.434 10 O -0.531 6.531 11 N -0.688 5.688 12 C 0.124 3.876 13 H 0.087 0.913 14 C -0.141 4.141 15 C 0.154 3.846 16 H 0.155 0.845 17 C -0.136 4.136 18 C -0.131 4.131 19 C 0.129 3.871 20 H 0.087 0.913 21 N -0.589 5.589 22 C -0.209 4.209 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.924 5.924 26 Si 0.917 3.083 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 N -0.452 5.452 31 C 0.234 3.766 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.223 0.777 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.404 0.596 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 23.759 2.648 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.176 5.176 3 C -0.008 4.008 4 N -0.211 5.211 5 C -0.103 4.103 6 C -0.055 4.055 7 C -0.149 4.149 8 C -0.022 4.022 9 C 0.349 3.651 10 O -0.407 6.407 11 N -0.338 5.338 12 C 0.018 3.982 13 H 0.105 0.895 14 C -0.181 4.181 15 C 0.047 3.953 16 H 0.172 0.828 17 C -0.175 4.175 18 C -0.171 4.171 19 C 0.019 3.981 20 H 0.105 0.895 21 N -0.310 5.310 22 C -0.337 4.337 23 H 0.097 0.903 24 C -0.208 4.208 25 N -0.572 5.572 26 Si 0.748 3.252 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.208 1.208 30 N -0.168 5.168 31 C -0.002 4.002 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.239 0.761 36 H 0.166 0.834 37 H 0.176 0.824 38 H 0.241 0.759 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.347 23.058 2.616 23.610 hybrid contribution -0.302 -0.523 -0.237 0.648 sum 4.046 22.535 2.379 23.019 Atomic orbital electron populations 1.22091 0.74911 1.05262 1.04001 1.45066 1.07907 1.04435 1.60221 1.25500 0.84958 0.93166 0.97135 1.70439 1.18190 1.10573 1.21904 1.19852 0.93352 0.91440 1.05647 1.20459 0.98437 0.90681 0.95930 1.21604 0.97330 0.96047 0.99958 1.21119 0.89167 0.92978 0.98896 1.17703 0.83879 0.85729 0.77745 1.90806 1.45677 1.53723 1.50509 1.46128 1.06797 1.09290 1.71593 1.22777 0.97899 0.77971 0.99566 0.89517 1.23310 0.94666 0.99556 1.00562 1.23776 0.94361 0.89014 0.88105 0.82828 1.23029 0.95867 0.98524 1.00093 1.22914 0.96949 0.97893 0.99326 1.23210 0.93618 0.88339 0.92889 0.89536 1.46489 1.14130 1.03226 1.67109 1.19072 1.01413 0.81810 1.31400 0.90261 1.24697 0.96382 0.98260 1.01443 1.69437 1.07072 1.33524 1.47192 0.86022 0.76720 0.84465 0.78014 1.21646 1.21721 1.20762 1.66186 1.36911 0.99816 1.13890 1.18848 0.89228 0.87666 1.04496 0.90335 0.89093 0.88860 0.76085 0.83412 0.82401 0.75943 0.91520 0.92704 0.92659 0.93682 0.93022 0.93061 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 11.19 59.85 0.67 1.04 16 2 N -0.48 -4.06 3.20 -124.97 -0.40 -4.46 16 3 C 0.28 2.01 12.49 -89.74 -1.12 0.89 16 4 N -0.49 -5.32 11.27 -11.93 -0.13 -5.45 16 5 C 0.02 0.22 7.25 -84.58 -0.61 -0.39 16 6 C -0.03 -0.30 10.16 -39.41 -0.40 -0.70 16 7 C -0.13 -1.51 9.55 -39.48 -0.38 -1.89 16 8 C 0.13 1.78 6.74 -82.97 -0.56 1.22 16 9 C 0.57 9.26 7.80 -12.27 -0.10 9.16 16 10 O -0.53 -10.15 15.95 5.33 0.09 -10.06 16 11 N -0.69 -11.00 3.69 -52.26 -0.19 -11.19 16 12 C 0.12 2.35 3.14 -65.40 -0.21 2.14 16 13 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 14 C -0.14 -2.71 6.20 -24.24 -0.15 -2.86 16 15 C 0.15 3.46 4.72 -62.78 -0.30 3.17 16 16 H 0.15 3.94 5.52 -51.93 -0.29 3.65 16 17 C -0.14 -2.63 6.44 -24.24 -0.16 -2.79 16 18 C -0.13 -2.47 6.32 -24.24 -0.15 -2.62 16 19 C 0.13 2.72 5.35 -62.77 -0.34 2.38 16 20 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 21 N -0.59 -14.67 2.99 -145.75 -0.44 -15.11 16 22 C -0.21 -5.75 10.59 -15.06 -0.16 -5.91 16 23 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.92 -26.11 10.47 55.49 0.58 -25.53 16 26 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 N -0.45 -5.98 9.54 -8.82 -0.08 -6.06 16 31 C 0.23 2.81 8.01 -155.74 -1.25 1.57 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.22 0.42 8.06 -52.48 -0.42 0.00 16 36 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.16 1.74 7.61 -52.49 -0.40 1.34 16 38 H 0.40 5.85 7.22 -40.82 -0.29 5.55 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.05 0.90 7.39 -51.92 -0.38 0.51 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.04 0.74 7.82 -51.93 -0.41 0.34 16 43 H 0.05 0.87 6.39 -51.93 -0.33 0.53 16 44 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -33.67 368.22 -11.20 -44.87 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.85 Total: 6.48 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -5.30 Total: 3.97 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -0.67 Total: -67.80 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.67 -11.20 -44.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096006598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.988 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds