Wall clock time and date at job start Sat Apr 11 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36164 * 126.24017 * 2 1 4 4 N 1.30060 * 110.11428 * 180.02562 * 3 2 1 5 5 C 1.35774 * 109.43245 * 0.02562 * 4 3 2 6 6 C 1.39487 * 133.74326 * 180.02562 * 5 4 3 7 7 C 1.39679 * 118.04969 * 179.97438 * 6 5 4 8 8 C 1.47685 * 120.37942 * 179.97438 * 7 6 5 9 9 O 1.21569 * 120.00475 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99973 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00166 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.68203 * 36.53171 * 11 10 8 13 13 C 1.54852 * 110.62879 * 273.54624 * 11 10 8 14 14 C 1.55845 * 103.44155 * 241.51056 * 13 11 10 15 15 H 1.09005 * 115.55425 * 158.81275 * 14 13 11 16 16 C 1.55838 * 105.73881 * 287.98275 * 14 13 11 17 17 C 1.55489 * 103.32620 * 71.93262 * 16 14 13 18 18 C 1.55850 * 103.32120 * 359.97438 * 17 16 14 19 19 H 1.08997 * 116.12119 * 159.23913 * 18 17 16 20 20 N 1.50232 * 101.05359 * 32.93779 * 14 13 11 21 21 C 1.36938 * 130.84303 * 125.28070 * 20 14 13 22 22 H 1.07999 * 120.00325 * 180.02562 * 21 20 14 23 23 C 1.38815 * 119.99817 * 0.02793 * 21 20 14 24 24 N 1.31621 * 119.99673 * 359.71804 * 23 21 20 25 25 Si 1.86795 * 120.00115 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47163 * 59.99668 * 25 23 21 27 27 H 1.48505 * 109.47234 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47124 * 299.99692 * 25 23 21 29 29 C 1.39976 * 119.23492 * 0.24781 * 7 6 5 30 30 N 1.31391 * 121.15955 * 359.47571 * 29 7 6 31 31 C 1.32541 * 121.78948 * 0.53934 * 30 29 7 32 32 H 1.08996 * 109.47421 * 89.97289 * 1 2 3 33 33 H 1.09002 * 109.47228 * 209.97388 * 1 2 3 34 34 H 1.09004 * 109.46943 * 329.96700 * 1 2 3 35 35 H 1.07998 * 124.94375 * 0.02562 * 3 2 1 36 36 H 1.07994 * 120.98046 * 359.94877 * 6 5 4 37 37 H 0.97000 * 119.99877 * 359.97438 * 10 8 7 38 38 H 1.08998 * 110.62808 * 123.01648 * 13 11 10 39 39 H 1.09000 * 110.62324 * 359.97438 * 13 11 10 40 40 H 1.09007 * 110.62459 * 190.50219 * 16 14 13 41 41 H 1.09000 * 110.63159 * 313.52646 * 16 14 13 42 42 H 1.09001 * 110.60654 * 241.58545 * 17 16 14 43 43 H 1.08995 * 110.89591 * 118.54883 * 17 16 14 44 44 H 0.97000 * 120.00043 * 180.02562 * 24 23 21 45 45 H 1.08000 * 119.41796 * 179.72750 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.0982 0.0000 4 7 3.5194 0.7370 -0.0005 5 6 3.5977 -0.6185 -0.0015 6 6 4.6594 -1.5232 -0.0019 7 6 4.3597 -2.8875 -0.0024 8 6 5.4439 -3.8903 -0.0035 9 8 6.6051 -3.5302 -0.0044 10 7 5.1461 -5.2048 -0.0045 11 6 6.2216 -6.1996 -0.0061 12 1 7.0610 -5.8600 0.6007 13 6 6.6820 -6.5029 -1.4531 14 6 6.3730 -8.0212 -1.6208 15 1 6.2785 -8.3711 -2.6489 16 6 7.4301 -8.7663 -0.7514 17 6 6.9705 -8.4697 0.7041 18 6 5.7013 -7.5870 0.5070 19 1 5.0113 -7.5436 1.3497 20 7 5.1459 -8.1616 -0.7655 21 6 3.9024 -8.6553 -1.0575 22 1 3.1363 -8.6736 -0.2965 23 6 3.6266 -9.1322 -2.3316 24 7 4.5587 -9.1047 -3.2606 25 14 1.9307 -9.8063 -2.7298 26 1 0.9136 -8.7456 -2.5158 27 1 1.8938 -10.2481 -4.1471 28 1 1.6362 -10.9605 -1.8433 29 6 3.0201 -3.2932 -0.0078 30 7 2.0435 -2.4142 -0.0020 31 6 2.2782 -1.1097 -0.0015 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3634 -0.8902 0.5134 34 1 -0.3633 0.8897 0.5144 35 1 1.9216 2.1205 0.0004 36 1 5.6830 -1.1791 -0.0023 37 1 4.2196 -5.4922 -0.0041 38 1 7.7497 -6.3138 -1.5639 39 1 6.1098 -5.9135 -2.1695 40 1 7.4071 -9.8373 -0.9531 41 1 8.4269 -8.3624 -0.9288 42 1 7.7404 -7.9194 1.2449 43 1 6.7196 -9.3920 1.2281 44 1 4.3659 -9.4376 -4.1510 45 1 2.7850 -4.3473 -0.0126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097635772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:40 Heat of formation + Delta-G solvation = 107.974535 kcal Electronic energy + Delta-G solvation = -29440.309459 eV Core-core repulsion = 25460.371993 eV Total energy + Delta-G solvation = -3979.937466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.59319 -39.96690 -38.79242 -37.67742 -34.79893 -33.86889 -32.55010 -32.01752 -30.17922 -29.09983 -28.78232 -27.87389 -27.29685 -24.53795 -24.09383 -23.83837 -21.52098 -21.13586 -20.13390 -19.80634 -18.73077 -18.04668 -17.87245 -17.04140 -16.90748 -16.41024 -15.96472 -15.38959 -14.82630 -14.56923 -14.50513 -14.14914 -13.94519 -13.76331 -13.65818 -13.47459 -13.11783 -13.06889 -12.77770 -12.56970 -12.05725 -11.82626 -11.28439 -11.20536 -11.11025 -10.94498 -10.94237 -10.88393 -10.50108 -10.36874 -10.12306 -10.00048 -9.86835 -9.41132 -9.22425 -9.14491 -8.97766 -8.93389 -8.79651 -8.44838 -6.95772 -5.74933 -3.14364 0.58644 0.71323 2.02372 2.48891 3.03695 3.36106 3.39049 3.40797 3.42346 3.84554 3.85167 4.03269 4.25379 4.40122 4.61450 4.71810 4.76969 4.79837 4.93332 5.07324 5.10866 5.26866 5.35629 5.60538 5.62761 5.69115 5.87234 5.90527 5.96164 6.05710 6.11311 6.15402 6.29108 6.31038 6.42662 6.50069 6.59629 6.60379 6.74056 6.83791 6.95498 7.10625 7.34094 7.40385 7.45923 7.60425 7.78934 7.93344 8.16992 8.54042 9.06277 9.69847 10.50891 11.33734 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012373 B = 0.003211 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.380341 B = 8718.854015 C =10428.944537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.486 5.486 3 C 0.268 3.732 4 N -0.480 5.480 5 C -0.011 4.011 6 C 0.045 3.955 7 C -0.193 4.193 8 C 0.564 3.436 9 O -0.545 6.545 10 N -0.697 5.697 11 C 0.129 3.871 12 H 0.079 0.921 13 C -0.142 4.142 14 C 0.153 3.847 15 H 0.152 0.848 16 C -0.138 4.138 17 C -0.126 4.126 18 C 0.125 3.875 19 H 0.088 0.912 20 N -0.591 5.591 21 C -0.216 4.216 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.914 3.086 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.178 3.822 30 N -0.484 5.484 31 C 0.253 3.747 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.223 0.777 36 H 0.155 0.845 37 H 0.401 0.599 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.254 0.746 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.586 16.210 7.486 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.179 5.179 3 C -0.018 4.018 4 N -0.198 5.198 5 C -0.130 4.130 6 C 0.017 3.983 7 C -0.201 4.201 8 C 0.350 3.650 9 O -0.424 6.424 10 N -0.346 5.346 11 C 0.022 3.978 12 H 0.097 0.903 13 C -0.182 4.182 14 C 0.047 3.953 15 H 0.169 0.831 16 C -0.177 4.177 17 C -0.166 4.166 18 C 0.016 3.984 19 H 0.106 0.894 20 N -0.312 5.312 21 C -0.344 4.344 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.566 5.566 25 Si 0.744 3.256 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 C 0.009 3.991 30 N -0.196 5.196 31 C 0.018 3.982 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.239 0.761 36 H 0.173 0.827 37 H 0.237 0.763 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.333 16.614 7.272 18.903 hybrid contribution -1.378 -0.630 -0.264 1.538 sum -6.711 15.984 7.008 18.699 Atomic orbital electron populations 1.22051 0.75146 1.04985 1.03922 1.45044 1.07882 1.04580 1.60358 1.25457 0.84876 0.93073 0.98427 1.70479 1.18281 1.10360 1.20727 1.19532 0.93010 0.91438 1.09048 1.20838 0.98986 0.89583 0.88850 1.20796 0.95244 0.94316 1.09730 1.17762 0.87791 0.82463 0.77030 1.90752 1.20095 1.80571 1.50950 1.45888 1.11147 1.04731 1.72872 1.22829 0.88609 0.88202 0.98120 0.90264 1.23438 0.98898 1.00728 0.95139 1.23739 0.83177 0.89684 0.98746 0.83126 1.23156 0.98238 1.00714 0.95627 1.22941 0.97062 0.99213 0.97335 1.23357 0.93646 0.90388 0.90963 0.89390 1.46546 1.08867 1.70108 1.05690 1.18949 0.86605 1.33275 0.95606 0.90422 1.24692 0.97933 1.01846 0.95960 1.69455 1.31902 1.51939 1.03315 0.86167 0.83394 0.78789 0.77204 1.21239 1.21656 1.21296 1.22860 0.86510 0.98576 0.91180 1.66388 1.37318 0.98991 1.16908 1.19133 0.89140 0.88192 1.01747 0.90433 0.89056 0.89193 0.76091 0.82743 0.76319 0.92740 0.92132 0.92588 0.93291 0.92969 0.92360 0.93489 0.81003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 11.18 59.85 0.67 1.10 16 2 N -0.49 -4.66 3.19 -124.99 -0.40 -5.06 16 3 C 0.27 2.31 12.50 -89.71 -1.12 1.18 16 4 N -0.48 -6.12 11.29 -12.02 -0.14 -6.26 16 5 C -0.01 -0.15 7.23 -84.69 -0.61 -0.77 16 6 C 0.05 0.67 9.75 -38.58 -0.38 0.29 16 7 C -0.19 -2.88 5.89 -104.85 -0.62 -3.49 16 8 C 0.56 9.62 7.77 -12.40 -0.10 9.52 16 9 O -0.54 -10.81 16.12 5.30 0.09 -10.72 16 10 N -0.70 -11.72 5.06 -51.87 -0.26 -11.98 16 11 C 0.13 2.34 2.76 -64.90 -0.18 2.16 16 12 H 0.08 1.44 7.43 -51.93 -0.39 1.05 16 13 C -0.14 -2.86 6.24 -24.24 -0.15 -3.02 16 14 C 0.15 3.41 4.67 -62.81 -0.29 3.12 16 15 H 0.15 3.89 5.52 -51.93 -0.29 3.60 16 16 C -0.14 -2.67 6.49 -23.89 -0.16 -2.83 16 17 C -0.13 -2.21 6.50 -23.89 -0.16 -2.37 16 18 C 0.13 2.35 5.07 -62.25 -0.32 2.03 16 19 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 20 N -0.59 -13.56 2.97 -145.23 -0.43 -14.00 16 21 C -0.22 -5.49 10.59 -15.06 -0.16 -5.65 16 22 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 24 N -0.92 -25.38 10.46 55.49 0.58 -24.79 16 25 Si 0.91 21.08 29.55 -169.99 -5.02 16.05 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 29 C 0.18 2.46 10.69 -17.09 -0.18 2.28 16 30 N -0.48 -6.85 10.37 -11.96 -0.12 -6.97 16 31 C 0.25 3.41 7.99 -155.64 -1.24 2.16 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.22 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.15 2.23 7.72 -52.49 -0.41 1.82 16 37 H 0.40 6.33 6.67 -40.82 -0.27 6.06 16 38 H 0.05 1.03 7.85 -51.93 -0.41 0.63 16 39 H 0.06 1.34 7.98 -51.93 -0.41 0.92 16 40 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 41 H 0.05 0.85 7.85 -51.93 -0.41 0.44 16 42 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.17 2.09 6.39 -52.49 -0.34 1.76 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -33.14 369.49 -11.06 -44.20 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.83 Total: 8.54 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -5.09 Total: 5.42 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -0.77 Total: -69.05 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.14 -11.06 -44.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097635772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.173 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds