Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35988 * 126.29337 * 2 1 4 4 N 1.30220 * 110.18017 * 180.02562 * 3 2 1 5 5 C 1.35432 * 109.57439 * 359.97438 * 4 3 2 6 6 C 1.39897 * 133.80963 * 180.02562 * 5 4 3 7 7 C 1.36994 * 118.35936 * 180.02562 * 6 5 4 8 8 C 1.39734 * 119.59650 * 0.02562 * 7 6 5 9 9 C 1.47974 * 119.42415 * 180.02562 * 8 7 6 10 10 O 1.21536 * 120.00312 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99937 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00300 * 179.97438 * 11 9 8 13 13 H 1.08997 * 110.68272 * 32.01167 * 12 11 9 14 14 C 1.55486 * 110.75365 * 268.95466 * 12 11 9 15 15 C 1.55845 * 103.32579 * 241.50860 * 14 12 11 16 16 H 1.08999 * 116.12374 * 159.23811 * 15 14 12 17 17 C 1.55380 * 105.04874 * 288.04533 * 15 14 12 18 18 C 1.54857 * 103.48672 * 72.07548 * 17 15 14 19 19 C 1.55842 * 103.44500 * 359.87214 * 18 17 15 20 20 H 1.08998 * 115.56151 * 158.81155 * 19 18 17 21 21 N 1.50236 * 101.04945 * 33.03003 * 15 14 12 22 22 C 1.36937 * 130.84181 * 126.06411 * 21 15 14 23 23 H 1.08000 * 120.00075 * 162.58227 * 22 21 15 24 24 C 1.38805 * 119.99736 * 342.58608 * 22 21 15 25 25 N 1.31625 * 120.00374 * 338.04898 * 24 22 21 26 26 Si 1.86807 * 120.00216 * 158.05268 * 24 22 21 27 27 H 1.48494 * 109.47399 * 179.97438 * 26 24 22 28 28 H 1.48504 * 109.47090 * 59.99652 * 26 24 22 29 29 H 1.48507 * 109.46849 * 299.99856 * 26 24 22 30 30 N 1.32650 * 121.14590 * 0.27206 * 8 7 6 31 31 C 1.31885 * 121.36651 * 359.43803 * 30 8 7 32 32 H 1.08997 * 109.47516 * 89.97365 * 1 2 3 33 33 H 1.09007 * 109.47112 * 209.97962 * 1 2 3 34 34 H 1.09002 * 109.47008 * 329.97401 * 1 2 3 35 35 H 1.08005 * 124.90947 * 0.02562 * 3 2 1 36 36 H 1.08002 * 120.82418 * 359.97438 * 6 5 4 37 37 H 1.07996 * 120.20182 * 179.97438 * 7 6 5 38 38 H 0.97008 * 120.00028 * 359.97438 * 11 9 8 39 39 H 1.09005 * 110.60427 * 123.10113 * 14 12 11 40 40 H 1.09000 * 110.89646 * 0.06645 * 14 12 11 41 41 H 1.09006 * 110.71760 * 313.52138 * 17 15 14 42 42 H 1.09000 * 110.50036 * 190.52429 * 17 15 14 43 43 H 1.09001 * 110.62073 * 241.38459 * 18 17 15 44 44 H 1.08995 * 110.62244 * 118.36837 * 18 17 15 45 45 H 0.97002 * 119.99712 * 353.96898 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.0961 0.0000 4 7 3.5210 0.7347 -0.0005 5 6 3.6028 -0.6172 -0.0004 6 6 4.6690 -1.5229 -0.0003 7 6 4.3844 -2.8630 -0.0006 8 6 3.0525 -3.2857 -0.0016 9 6 2.7495 -4.7341 -0.0014 10 8 3.6552 -5.5445 -0.0008 11 7 1.4691 -5.1546 -0.0018 12 6 1.1690 -6.5886 -0.0021 13 1 1.9363 -7.1426 0.5385 14 6 1.0305 -7.1221 -1.4560 15 6 -0.4399 -7.6356 -1.5117 16 1 -0.8774 -7.7316 -2.5054 17 6 -0.4482 -8.9296 -0.6517 18 6 -0.3127 -8.4011 0.7975 19 6 -0.2375 -6.8553 0.6139 20 1 -0.4967 -6.2642 1.4922 21 7 -1.1190 -6.6649 -0.5877 22 6 -2.2094 -5.8590 -0.7796 23 1 -2.7258 -5.4378 0.0702 24 6 -2.6511 -5.5838 -2.0664 25 7 -1.8279 -5.7093 -3.0858 26 14 -4.4138 -5.0350 -2.3517 27 1 -4.6323 -4.8059 -3.8024 28 1 -4.6662 -3.7744 -1.6083 29 1 -5.3440 -6.0880 -1.8707 30 7 2.0552 -2.4111 -0.0076 31 6 2.2814 -1.1119 -0.0018 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3634 -0.8902 0.5135 34 1 -0.3633 0.8898 0.5142 35 1 1.9220 2.1185 0.0004 36 1 5.6912 -1.1744 -0.0008 37 1 5.1845 -3.5883 -0.0010 38 1 0.7461 -4.5078 -0.0018 39 1 1.7295 -7.9396 -1.6328 40 1 1.1857 -6.3223 -2.1801 41 1 0.3971 -9.5684 -0.9081 42 1 -1.3886 -9.4661 -0.7784 43 1 0.5998 -8.7777 1.2598 44 1 -1.1858 -8.6755 1.3895 45 1 -0.8912 -5.9087 -2.9311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097841089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = 105.783551 kcal Electronic energy + Delta-G solvation = -29989.031203 eV Core-core repulsion = 26008.998729 eV Total energy + Delta-G solvation = -3980.032474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.51628 -40.05614 -39.01698 -37.62081 -34.73988 -33.89008 -32.77642 -31.98433 -30.26494 -29.11192 -28.85566 -27.78009 -27.33077 -24.93212 -23.95979 -23.24573 -21.68752 -21.01743 -20.22508 -19.86658 -18.87107 -17.99829 -17.82634 -17.61594 -17.10174 -16.32167 -15.81796 -15.08583 -14.85412 -14.76025 -14.46135 -14.20853 -13.75661 -13.68343 -13.57812 -13.52672 -13.28362 -12.97496 -12.77629 -12.39733 -12.37422 -11.76492 -11.58651 -11.35855 -11.17248 -10.98527 -10.81177 -10.69924 -10.62836 -10.41820 -10.13186 -10.08074 -9.83533 -9.53843 -9.41638 -9.21847 -8.89919 -8.77213 -8.65997 -8.41119 -7.04496 -6.13543 -3.19388 0.36525 1.11396 2.11637 2.39095 3.04892 3.41965 3.42082 3.48016 3.65171 3.84164 3.90037 4.04899 4.37972 4.47601 4.65557 4.81070 4.90951 4.94940 5.01664 5.13993 5.30281 5.38142 5.40615 5.47923 5.52250 5.73123 5.74114 5.82909 5.89441 5.97310 5.99097 6.02263 6.10312 6.22941 6.31085 6.40847 6.46677 6.53932 6.63684 6.66500 6.78400 6.90841 7.07928 7.20386 7.46449 7.50551 7.56303 8.01183 8.33315 8.52752 8.91334 9.72614 10.41481 11.23076 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.004064 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.904476 B = 6888.576282 C = 8948.681703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.481 5.481 3 C 0.279 3.721 4 N -0.494 5.494 5 C 0.019 3.981 6 C -0.030 4.030 7 C -0.126 4.126 8 C 0.125 3.875 9 C 0.568 3.432 10 O -0.543 6.543 11 N -0.681 5.681 12 C 0.126 3.874 13 H 0.084 0.916 14 C -0.139 4.139 15 C 0.140 3.860 16 H 0.108 0.892 17 C -0.134 4.134 18 C -0.126 4.126 19 C 0.127 3.873 20 H 0.090 0.910 21 N -0.594 5.594 22 C -0.318 4.318 23 H 0.065 0.935 24 C -0.027 4.027 25 N -0.924 5.924 26 Si 1.067 2.933 27 H -0.286 1.286 28 H -0.295 1.295 29 H -0.294 1.294 30 N -0.445 5.445 31 C 0.235 3.765 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.223 0.777 36 H 0.147 0.853 37 H 0.157 0.843 38 H 0.414 0.586 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.286 9.324 7.470 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.173 5.173 3 C -0.007 4.007 4 N -0.213 5.213 5 C -0.103 4.103 6 C -0.058 4.058 7 C -0.150 4.150 8 C -0.025 4.025 9 C 0.352 3.648 10 O -0.421 6.421 11 N -0.330 5.330 12 C 0.019 3.981 13 H 0.102 0.898 14 C -0.179 4.179 15 C 0.033 3.967 16 H 0.126 0.874 17 C -0.174 4.174 18 C -0.165 4.165 19 C 0.018 3.982 20 H 0.108 0.892 21 N -0.316 5.316 22 C -0.445 4.445 23 H 0.082 0.918 24 C -0.228 4.228 25 N -0.565 5.565 26 Si 0.897 3.103 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.222 1.222 30 N -0.160 5.160 31 C -0.002 4.002 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.239 0.761 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.251 0.749 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.214 9.522 6.258 12.979 hybrid contribution 0.691 -0.058 1.140 1.335 sum 6.905 9.464 7.399 13.856 Atomic orbital electron populations 1.22133 0.74621 1.05191 1.04455 1.45098 1.08070 1.04415 1.59717 1.25485 0.84978 0.93190 0.97093 1.70432 1.18193 1.10510 1.22209 1.19853 0.93324 0.91475 1.05607 1.20418 0.98320 0.90666 0.96363 1.21563 0.97182 0.96011 1.00245 1.21055 0.89125 0.92968 0.99333 1.17722 0.83753 0.85885 0.77474 1.90753 1.45816 1.53856 1.51632 1.45882 1.07005 1.09332 1.70754 1.22776 0.98146 0.79521 0.97619 0.89775 1.23527 0.98481 1.00096 0.95827 1.22938 0.90173 0.87912 0.95646 0.87443 1.22895 1.00113 0.98291 0.96073 1.22877 1.00095 0.96567 0.97002 1.23196 0.88335 0.94560 0.92070 0.89182 1.46552 1.31082 1.44405 1.09567 1.19696 1.03609 1.26786 0.94459 0.91757 1.25690 1.05806 0.99670 0.91629 1.70760 1.05582 1.47586 1.32585 0.83489 0.75244 0.75694 0.75873 1.21122 1.22251 1.22169 1.66217 1.36857 0.99908 1.13022 1.18864 0.89184 0.87678 1.04447 0.90013 0.88711 0.89130 0.76090 0.83490 0.82560 0.74906 0.92188 0.91770 0.92691 0.92499 0.92572 0.92154 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 11.19 59.85 0.67 1.34 16 2 N -0.48 -5.55 3.20 -124.97 -0.40 -5.95 16 3 C 0.28 2.69 12.49 -89.74 -1.12 1.57 16 4 N -0.49 -6.36 11.27 -11.93 -0.13 -6.50 16 5 C 0.02 0.27 7.25 -84.57 -0.61 -0.34 16 6 C -0.03 -0.38 10.16 -39.41 -0.40 -0.78 16 7 C -0.13 -1.75 9.55 -39.47 -0.38 -2.12 16 8 C 0.12 2.06 6.74 -82.97 -0.56 1.50 16 9 C 0.57 10.45 7.80 -12.27 -0.10 10.35 16 10 O -0.54 -10.77 15.94 5.33 0.09 -10.69 16 11 N -0.68 -12.90 5.08 -51.97 -0.26 -13.16 16 12 C 0.13 2.39 2.82 -65.09 -0.18 2.20 16 13 H 0.08 1.55 7.23 -51.93 -0.38 1.17 16 14 C -0.14 -2.82 6.12 -23.89 -0.15 -2.96 16 15 C 0.14 3.08 3.77 -63.06 -0.24 2.85 16 16 H 0.11 2.67 6.55 -51.93 -0.34 2.33 16 17 C -0.13 -2.48 6.42 -24.49 -0.16 -2.64 16 18 C -0.13 -2.18 6.44 -24.24 -0.16 -2.33 16 19 C 0.13 2.47 5.06 -62.80 -0.32 2.16 16 20 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 21 N -0.59 -13.98 2.83 -146.09 -0.41 -14.39 16 22 C -0.32 -8.41 10.42 -15.06 -0.16 -8.56 16 23 H 0.06 1.69 7.92 -52.49 -0.42 1.28 16 24 C -0.03 -0.73 5.34 -17.43 -0.09 -0.82 16 25 N -0.92 -26.84 12.67 55.49 0.70 -26.14 16 26 Si 1.07 24.46 29.97 -169.99 -5.09 19.36 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.30 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 30 N -0.44 -7.43 9.54 -8.82 -0.08 -7.52 16 31 C 0.24 3.54 8.01 -155.74 -1.25 2.29 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.22 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.16 1.93 7.61 -52.49 -0.40 1.53 16 38 H 0.41 8.26 7.97 -40.82 -0.33 7.94 16 39 H 0.06 1.10 7.80 -51.93 -0.41 0.70 16 40 H 0.06 1.45 7.59 -51.93 -0.39 1.06 16 41 H 0.05 0.90 7.80 -51.93 -0.41 0.49 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.85 7.82 -51.93 -0.41 0.44 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.27 7.86 5.66 -40.82 -0.23 7.63 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -33.66 370.33 -11.09 -44.75 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -5.87 Total: 10.96 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -5.19 Total: 3.69 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -0.59 Total: -73.66 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.09 Total: 19.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.66 -11.09 -44.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097841089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.538 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds