Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99917 * 2 1 4 4 O 1.21278 * 120.00385 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99564 * 180.02562 * 3 2 1 6 6 N 1.46902 * 109.46793 * 179.97438 * 5 3 2 7 7 C 1.46899 * 111.00001 * 179.97438 * 6 5 3 8 8 H 1.09010 * 109.32213 * 35.35980 * 7 6 5 9 9 C 1.53035 * 109.32591 * 154.99737 * 7 6 5 10 10 C 1.53967 * 108.82776 * 175.50143 * 9 7 6 11 11 H 1.09005 * 112.99329 * 168.09260 * 10 9 7 12 12 C 1.55426 * 106.41808 * 293.82480 * 10 9 7 13 13 C 1.55456 * 100.23398 * 73.19377 * 12 10 9 14 14 H 1.08995 * 113.04792 * 163.20729 * 13 12 10 15 15 C 1.52980 * 109.18293 * 275.80202 * 7 6 5 16 16 N 1.47799 * 104.11417 * 40.86720 * 13 12 10 17 17 C 1.34776 * 125.85198 * 153.44009 * 16 13 12 18 18 O 1.21280 * 120.00179 * 359.71756 * 17 16 13 19 19 C 1.50701 * 119.99720 * 179.71811 * 17 16 13 20 20 S 1.80995 * 109.47163 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99933 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00353 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99705 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00132 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99774 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 60.00133 * 25 23 21 28 28 H 1.48500 * 109.47454 * 300.00126 * 25 23 21 29 29 C 1.47083 * 108.28739 * 333.18176 * 16 13 12 30 30 H 1.09001 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46612 * 300.00141 * 1 2 3 32 32 H 1.08997 * 109.46947 * 59.99353 * 1 2 3 33 33 H 0.96996 * 119.99832 * 180.02562 * 2 1 3 34 34 H 1.08994 * 109.47298 * 60.00013 * 5 3 2 35 35 H 1.08999 * 109.46761 * 299.99488 * 5 3 2 36 36 H 1.00900 * 111.00065 * 303.95390 * 6 5 3 37 37 H 1.09000 * 109.56967 * 55.70117 * 9 7 6 38 38 H 1.08997 * 109.57769 * 295.30975 * 9 7 6 39 39 H 1.08997 * 111.23488 * 191.15174 * 12 10 9 40 40 H 1.09000 * 111.23558 * 315.60278 * 12 10 9 41 41 H 1.08995 * 109.53676 * 304.61791 * 15 7 6 42 42 H 1.08999 * 109.53783 * 64.77063 * 15 7 6 43 43 H 1.08995 * 109.47138 * 59.99991 * 19 17 16 44 44 H 1.08998 * 109.47102 * 300.00238 * 19 17 16 45 45 H 0.97001 * 120.00200 * 359.97438 * 24 23 21 46 46 H 1.08997 * 109.97804 * 120.72279 * 29 16 13 47 47 H 1.09006 * 109.97219 * 241.96473 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6460 1.1671 -0.0006 6 7 4.1356 2.5521 -0.0011 7 6 5.6041 2.5913 -0.0010 8 1 5.9871 1.7621 -0.5960 9 6 6.0755 3.9129 -0.6119 10 6 7.6093 3.9914 -0.5032 11 1 8.0373 4.8002 -1.0956 12 6 7.9384 4.0791 1.0132 13 6 7.6350 2.6173 1.4467 14 1 8.0669 2.3607 2.4139 15 6 6.1104 2.4592 1.4365 16 7 8.1826 1.7945 0.3478 17 6 8.6176 0.5234 0.4546 18 8 8.5831 -0.0412 1.5274 19 6 9.1471 -0.1963 -0.7590 20 16 9.6483 -1.8725 -0.2954 21 6 10.2090 -2.4669 -1.8565 22 1 10.1708 -1.8250 -2.7242 23 6 10.7009 -3.7598 -1.9708 24 7 10.7481 -4.5419 -0.9132 25 14 11.2947 -4.3901 -3.6259 26 1 11.7687 -5.7901 -3.4814 27 1 12.4107 -3.5377 -4.1089 28 1 10.1776 -4.3436 -4.6032 29 6 8.1654 2.5987 -0.8836 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.9500 -0.8400 -0.0004 34 1 4.0089 0.6535 -0.8908 35 1 4.0095 0.6531 0.8892 36 1 3.7598 3.0682 -0.7824 37 1 5.6278 4.7459 -0.0699 38 1 5.7808 3.9563 -1.6604 39 1 8.9856 4.3338 1.1759 40 1 7.2794 4.7841 1.5201 41 1 5.6582 3.2345 2.0549 42 1 5.8428 1.4781 1.8285 43 1 10.0068 0.3439 -1.1554 44 1 8.3680 -0.2476 -1.5196 45 1 10.4394 -4.2147 -0.0538 46 1 9.1766 2.6966 -1.2785 47 1 7.5198 2.1293 -1.6259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108625074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = -65.511357 kcal Electronic energy + Delta-G solvation = -27992.104164 eV Core-core repulsion = 24107.794985 eV Total energy + Delta-G solvation = -3884.309179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25723 -39.83421 -38.22756 -35.92490 -34.80672 -32.83211 -32.56640 -31.57077 -30.28341 -28.75968 -27.70677 -25.99084 -24.97819 -24.86827 -22.29445 -21.74244 -20.77545 -19.86970 -19.00172 -18.28318 -17.68332 -16.89557 -16.65709 -16.36424 -15.82770 -15.39243 -15.11795 -14.89293 -14.63420 -14.29562 -13.96972 -13.86210 -13.79612 -13.52955 -13.27335 -12.97160 -12.78593 -12.64477 -12.58986 -12.45290 -12.32118 -12.31387 -12.22048 -11.86878 -11.77692 -11.44513 -11.06971 -10.95551 -10.58115 -10.36796 -10.20840 -10.07707 -9.61486 -9.49964 -9.44991 -9.05287 -8.72560 -8.55211 -8.26295 -6.71573 -6.65919 -4.04118 2.38866 2.76762 2.82362 2.94599 3.29890 3.34368 3.43115 3.54702 3.85855 4.15721 4.20140 4.25184 4.48107 4.53922 4.73445 4.87834 4.91513 4.93224 4.96763 5.02689 5.04354 5.14243 5.18449 5.18971 5.25680 5.30032 5.34700 5.37927 5.45226 5.52706 5.58199 5.68307 5.73237 5.78212 5.84017 5.87308 5.97092 5.99643 6.05937 6.07792 6.39878 6.64773 7.05732 7.19769 7.61202 7.87678 7.95218 8.44928 8.46293 9.23138 10.77965 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009328 B = 0.003072 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.869033 B = 9113.528381 C =11065.150479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.739 5.739 3 C 0.513 3.487 4 O -0.528 6.528 5 C 0.039 3.961 6 N -0.669 5.669 7 C 0.088 3.912 8 H 0.053 0.947 9 C -0.117 4.117 10 C -0.097 4.097 11 H 0.105 0.895 12 C -0.127 4.127 13 C 0.135 3.865 14 H 0.100 0.900 15 C -0.117 4.117 16 N -0.620 5.620 17 C 0.547 3.453 18 O -0.516 6.516 19 C -0.124 4.124 20 S -0.116 6.116 21 C -0.608 4.608 22 H 0.065 0.935 23 C 0.036 3.964 24 N -0.883 5.883 25 Si 1.083 2.917 26 H -0.277 1.277 27 H -0.285 1.285 28 H -0.285 1.285 29 C 0.102 3.898 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.404 0.596 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.349 0.651 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.278 0.722 46 H 0.068 0.932 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.443 17.192 -0.439 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.392 5.392 3 C 0.299 3.701 4 O -0.404 6.404 5 C -0.094 4.094 6 N -0.301 5.301 7 C -0.022 4.022 8 H 0.071 0.929 9 C -0.155 4.155 10 C -0.116 4.116 11 H 0.123 0.877 12 C -0.165 4.165 13 C 0.032 3.968 14 H 0.118 0.882 15 C -0.156 4.156 16 N -0.357 5.357 17 C 0.335 3.665 18 O -0.391 6.391 19 C -0.275 4.275 20 S 0.110 5.890 21 C -0.756 4.756 22 H 0.083 0.917 23 C -0.175 4.175 24 N -0.517 5.517 25 Si 0.909 3.091 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.212 1.212 29 C -0.021 4.021 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.238 0.762 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.168 0.832 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.349 15.756 1.089 21.338 hybrid contribution -0.243 1.215 -1.685 2.091 sum -14.592 16.971 -0.596 22.389 Atomic orbital electron populations 1.21521 0.79517 1.02270 1.02243 1.45828 1.07900 1.08945 1.76576 1.20653 0.90074 0.83653 0.75703 1.90699 1.70169 1.31170 1.48326 1.21868 0.91556 0.92543 1.03408 1.60178 1.07618 1.11189 1.51140 1.21635 0.86134 0.97474 0.96910 0.92940 1.21989 0.94943 0.97757 1.00782 1.22605 0.95385 0.96538 0.97114 0.87718 1.23096 1.02292 0.95925 0.95160 1.22151 0.93151 0.89469 0.92076 0.88166 1.21972 0.94363 1.02901 0.96362 1.48674 1.64346 1.12503 1.10159 1.19960 0.76604 0.79548 0.90343 1.90706 1.54215 1.65018 1.29139 1.23290 1.03449 1.02439 0.98336 1.84812 1.82047 1.04971 1.17128 1.23690 1.52985 1.04446 0.94438 0.91689 1.26048 0.94142 0.92176 1.05113 1.70799 1.41828 1.38076 1.01042 0.83339 0.76402 0.76503 0.72825 1.20241 1.21122 1.21151 1.22165 1.01227 0.91044 0.87670 0.90586 0.92230 0.92325 0.76204 0.92069 0.87809 0.83157 0.90251 0.91629 0.90592 0.89478 0.90148 0.91717 0.89134 0.89382 0.90977 0.91346 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.70 59.85 0.64 1.26 16 2 N -0.74 -6.03 5.71 -67.07 -0.38 -6.42 16 3 C 0.51 5.60 7.87 -10.98 -0.09 5.51 16 4 O -0.53 -7.64 16.20 5.56 0.09 -7.55 16 5 C 0.04 0.38 5.96 -4.97 -0.03 0.35 16 6 N -0.67 -6.83 5.92 -107.98 -0.64 -7.47 16 7 C 0.09 0.86 2.12 -67.71 -0.14 0.72 16 8 H 0.05 0.60 5.62 -51.92 -0.29 0.31 16 9 C -0.12 -0.89 4.75 -26.21 -0.12 -1.02 16 10 C -0.10 -0.73 4.33 -87.93 -0.38 -1.12 16 11 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 12 C -0.13 -1.04 6.20 -24.14 -0.15 -1.19 16 13 C 0.14 1.56 3.95 -65.77 -0.26 1.30 16 14 H 0.10 1.30 8.01 -51.93 -0.42 0.88 16 15 C -0.12 -1.28 5.14 -26.60 -0.14 -1.42 16 16 N -0.62 -8.47 2.37 -161.99 -0.38 -8.86 16 17 C 0.55 10.22 7.87 -10.99 -0.09 10.13 16 18 O -0.52 -11.61 16.11 5.56 0.09 -11.52 16 19 C -0.12 -2.51 5.36 36.01 0.19 -2.32 16 20 S -0.12 -3.09 19.60 -107.50 -2.11 -5.20 16 21 C -0.61 -17.32 9.50 30.94 0.29 -17.03 16 22 H 0.06 1.77 7.80 -52.49 -0.41 1.37 16 23 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 24 N -0.88 -27.23 13.67 55.49 0.76 -26.47 16 25 Si 1.08 24.61 29.92 -169.99 -5.09 19.53 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 29 C 0.10 1.05 5.23 -2.82 -0.01 1.04 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.40 2.37 8.83 -40.82 -0.36 2.01 16 34 H 0.06 0.55 8.05 -51.93 -0.42 0.14 16 35 H 0.10 1.04 7.45 -51.93 -0.39 0.65 16 36 H 0.35 3.47 8.05 -39.29 -0.32 3.16 16 37 H 0.08 0.59 7.97 -51.93 -0.41 0.17 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.60 7.75 -51.93 -0.40 0.20 16 41 H 0.08 0.82 8.00 -51.93 -0.42 0.40 16 42 H 0.06 0.84 7.51 -51.93 -0.39 0.45 16 43 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.28 8.75 7.12 -40.82 -0.29 8.45 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.69 6.77 -51.93 -0.35 0.34 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -36.88 387.53 -9.67 -46.54 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.46 Total: 4.40 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.38 Total: -2.83 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.65 Total: -49.21 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.18 Total: -19.06 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.09 Total: 19.53 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.11 Total: -5.20 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.88 -9.67 -46.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108625074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.968 kcal (2) G-P(sol) polarization free energy of solvation -36.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds