Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34782 * 120.00070 * 2 1 4 4 O 1.21285 * 119.99797 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00153 * 179.97438 * 3 2 1 6 6 N 1.46896 * 109.47308 * 186.27115 * 5 3 2 7 7 C 1.46903 * 111.00282 * 186.62085 * 6 5 3 8 8 H 1.08998 * 109.31993 * 37.43503 * 7 6 5 9 9 C 1.53031 * 109.32541 * 277.97168 * 7 6 5 10 10 C 1.53973 * 108.82310 * 295.14197 * 9 7 6 11 11 H 1.08996 * 112.99572 * 169.00190 * 10 9 7 12 12 C 1.56599 * 106.91775 * 293.89686 * 10 9 7 13 13 C 1.55168 * 99.84086 * 72.75101 * 12 10 9 14 14 H 1.09008 * 112.48469 * 163.43783 * 13 12 10 15 15 C 1.52983 * 109.32530 * 157.07926 * 7 6 5 16 16 N 1.47795 * 104.25268 * 41.32686 * 13 12 10 17 17 C 1.34774 * 125.85843 * 153.52647 * 16 13 12 18 18 O 1.21286 * 120.00080 * 5.40367 * 17 16 13 19 19 C 1.50703 * 120.00057 * 185.39894 * 17 16 13 20 20 S 1.80998 * 109.46954 * 185.90179 * 19 17 16 21 21 C 1.76208 * 99.99822 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99878 * 0.02562 * 21 20 19 23 23 C 1.38795 * 119.99804 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00460 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99864 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47331 * 89.99944 * 25 23 21 27 27 H 1.48500 * 109.46897 * 329.99353 * 25 23 21 28 28 H 1.48502 * 109.47054 * 210.00137 * 25 23 21 29 29 C 1.47087 * 108.28544 * 333.79341 * 16 13 12 30 30 H 1.09002 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47152 * 299.99563 * 1 2 3 32 32 H 1.08993 * 109.47489 * 59.99447 * 1 2 3 33 33 H 0.97003 * 120.00356 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.46939 * 66.27002 * 5 3 2 35 35 H 1.08997 * 109.47493 * 306.27437 * 5 3 2 36 36 H 1.00907 * 111.00260 * 310.57592 * 6 5 3 37 37 H 1.08996 * 109.57865 * 54.93798 * 9 7 6 38 38 H 1.08993 * 109.57735 * 175.33983 * 9 7 6 39 39 H 1.09006 * 110.79780 * 315.42126 * 12 10 9 40 40 H 1.08997 * 112.14879 * 190.62644 * 12 10 9 41 41 H 1.09002 * 109.53284 * 305.28890 * 15 7 6 42 42 H 1.09004 * 109.59447 * 185.10187 * 15 7 6 43 43 H 1.08994 * 109.46803 * 65.90025 * 19 17 16 44 44 H 1.09004 * 109.46806 * 305.89990 * 19 17 16 45 45 H 0.97003 * 119.99719 * 0.02562 * 24 23 21 46 46 H 1.08993 * 109.97564 * 120.20359 * 29 16 13 47 47 H 1.09002 * 109.96968 * 241.48827 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1673 0.0006 6 7 4.1354 2.5439 0.1517 7 6 5.5954 2.6032 -0.0003 8 1 5.9061 1.9021 -0.7748 9 6 6.2585 2.2162 1.3235 10 6 5.9036 3.2738 2.3848 11 1 6.1783 2.9717 3.3954 12 6 6.5851 4.6118 1.9405 13 6 5.6735 4.9888 0.7427 14 1 5.7813 6.0331 0.4493 15 6 6.0050 4.0202 -0.4061 16 7 4.3079 4.6722 1.2110 17 6 3.1709 5.2531 0.7797 18 8 3.2054 6.0481 -0.1357 19 6 1.8565 4.9150 1.4348 20 16 0.5080 5.7136 0.5293 21 6 -0.8682 5.1643 1.4828 22 1 -0.7112 4.5258 2.3396 23 6 -2.1541 5.5521 1.1326 24 7 -2.3455 6.3307 0.0886 25 14 -3.6130 4.9703 2.1439 26 1 -3.8821 5.9454 3.2311 27 1 -3.3081 3.6423 2.7341 28 1 -4.8088 4.8607 1.2701 29 6 4.4032 3.6187 2.2331 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.9500 -0.8400 -0.0004 34 1 4.0095 0.7535 -0.9400 35 1 4.0089 0.5595 0.8293 36 1 3.6786 3.1639 -0.5002 37 1 5.8929 1.2406 1.6436 38 1 7.3399 2.1784 1.1929 39 1 7.6105 4.4348 1.6158 40 1 6.5460 5.3718 2.7209 41 1 5.4577 4.3155 -1.3013 42 1 7.0758 4.0475 -0.6081 43 1 1.8623 5.2698 2.4654 44 1 1.7121 3.8346 1.4232 45 1 -1.5879 6.6331 -0.4362 46 1 3.9876 3.9755 3.1754 47 1 3.8670 2.7293 1.9021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108625075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = -26.447786 kcal Electronic energy + Delta-G solvation = -29929.713506 eV Core-core repulsion = 26047.098250 eV Total energy + Delta-G solvation = -3882.615255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26682 -39.38182 -37.82737 -35.26297 -34.42914 -32.68272 -32.28763 -31.51476 -29.96794 -28.30561 -27.44493 -25.64066 -24.62190 -24.54700 -22.05872 -21.88169 -20.43291 -19.54933 -18.73162 -18.01992 -17.31163 -16.87405 -16.27703 -15.97498 -15.39410 -15.03959 -14.92123 -14.65077 -14.18149 -13.99449 -13.72624 -13.55612 -13.44825 -13.01328 -12.91722 -12.80513 -12.65312 -12.38713 -12.25202 -12.18730 -12.11879 -12.05438 -11.89474 -11.52160 -11.49045 -11.32727 -10.79378 -10.77047 -10.45950 -10.22922 -10.07935 -9.67875 -9.29136 -9.10375 -9.01894 -8.78632 -8.24546 -7.91378 -7.87824 -6.40125 -6.31561 -3.70041 2.76378 3.12253 3.21300 3.39557 3.44557 3.49710 3.64963 3.89401 4.08827 4.34233 4.44757 4.52172 4.61353 4.74430 4.87840 5.02072 5.03563 5.11856 5.15096 5.19950 5.27041 5.32707 5.35707 5.44155 5.47860 5.55422 5.64113 5.66745 5.73029 5.82121 5.85083 5.89572 5.99820 6.03417 6.07175 6.17607 6.27602 6.37938 6.52649 6.69599 6.78120 6.86926 7.21019 7.51093 8.09312 8.17019 8.39348 8.72892 8.90036 9.51614 11.04369 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.004506 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.646103 B = 6212.961498 C = 7694.712224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.740 5.740 3 C 0.491 3.509 4 O -0.486 6.486 5 C 0.030 3.970 6 N -0.653 5.653 7 C 0.090 3.910 8 H 0.044 0.956 9 C -0.102 4.102 10 C -0.097 4.097 11 H 0.091 0.909 12 C -0.130 4.130 13 C 0.138 3.862 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.598 5.598 17 C 0.556 3.444 18 O -0.537 6.537 19 C -0.118 4.118 20 S -0.120 6.120 21 C -0.589 4.589 22 H 0.060 0.940 23 C 0.031 3.969 24 N -0.893 5.893 25 Si 1.085 2.915 26 H -0.286 1.286 27 H -0.289 1.289 28 H -0.282 1.282 29 C 0.103 3.897 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.395 0.605 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.360 0.640 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.111 0.889 45 H 0.277 0.723 46 H 0.039 0.961 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.276 -17.016 3.016 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.394 5.394 3 C 0.275 3.725 4 O -0.358 6.358 5 C -0.102 4.102 6 N -0.289 5.289 7 C -0.020 4.020 8 H 0.062 0.938 9 C -0.140 4.140 10 C -0.116 4.116 11 H 0.110 0.890 12 C -0.168 4.168 13 C 0.033 3.967 14 H 0.109 0.891 15 C -0.172 4.172 16 N -0.333 5.333 17 C 0.345 3.655 18 O -0.414 6.414 19 C -0.269 4.269 20 S 0.107 5.893 21 C -0.737 4.737 22 H 0.078 0.922 23 C -0.178 4.178 24 N -0.528 5.528 25 Si 0.912 3.088 26 H -0.213 1.213 27 H -0.215 1.215 28 H -0.208 1.208 29 C -0.020 4.020 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.228 0.772 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.183 0.817 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.118 -15.012 2.329 23.644 hybrid contribution 1.920 -1.728 0.234 2.593 sum 20.037 -16.740 2.563 26.235 Atomic orbital electron populations 1.21521 0.79172 1.01583 1.03237 1.45730 1.07863 1.08280 1.77543 1.20689 0.89921 0.84348 0.77501 1.90959 1.69380 1.30110 1.45312 1.21983 0.92539 0.93808 1.01902 1.61370 1.04708 1.05408 1.57391 1.21504 0.87663 0.96390 0.96443 0.93802 1.21774 0.99376 0.98437 0.94384 1.22715 0.95686 0.94733 0.98432 0.89034 1.23238 0.98180 0.97505 0.97844 1.22007 0.82678 0.98500 0.93492 0.89053 1.22294 1.01329 0.94349 0.99198 1.48331 1.04452 1.38981 1.41565 1.19887 0.83873 0.79207 0.82488 1.90668 1.86114 1.35376 1.29195 1.23274 0.94990 1.06618 1.01973 1.84543 0.97306 1.65259 1.42229 1.23667 0.93933 1.38920 1.17192 0.92167 1.25929 0.99447 0.94796 0.97618 1.70738 1.35188 1.30940 1.15979 0.83329 0.74744 0.75661 0.75068 1.21296 1.21536 1.20754 1.22518 0.96000 0.94086 0.89420 0.91203 0.91760 0.92002 0.77221 0.92553 0.88486 0.81657 0.91668 0.91510 0.90450 0.90852 0.91318 0.90592 0.90643 0.87077 0.91064 0.94243 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 10.70 59.84 0.64 1.67 16 2 N -0.74 -7.63 5.71 -67.08 -0.38 -8.02 16 3 C 0.49 6.60 7.87 -10.99 -0.09 6.51 16 4 O -0.49 -9.53 13.72 5.55 0.08 -9.46 16 5 C 0.03 0.29 5.58 -4.98 -0.03 0.26 16 6 N -0.65 -7.72 1.26 -107.99 -0.14 -7.86 16 7 C 0.09 0.82 2.77 -67.70 -0.19 0.64 16 8 H 0.04 0.36 7.73 -51.93 -0.40 -0.04 16 9 C -0.10 -0.74 5.29 -26.21 -0.14 -0.88 16 10 C -0.10 -0.85 4.31 -87.28 -0.38 -1.22 16 11 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 12 C -0.13 -1.19 6.27 -23.64 -0.15 -1.33 16 13 C 0.14 1.72 3.91 -65.62 -0.26 1.46 16 14 H 0.09 1.29 8.08 -51.92 -0.42 0.87 16 15 C -0.13 -1.40 5.25 -26.28 -0.14 -1.54 16 16 N -0.60 -9.26 1.73 -161.81 -0.28 -9.54 16 17 C 0.56 11.74 6.52 -10.99 -0.07 11.67 16 18 O -0.54 -13.30 16.18 5.55 0.09 -13.21 16 19 C -0.12 -2.78 5.40 36.01 0.19 -2.58 16 20 S -0.12 -3.53 19.61 -107.50 -2.11 -5.64 16 21 C -0.59 -18.26 9.50 30.94 0.29 -17.96 16 22 H 0.06 1.83 7.80 -52.48 -0.41 1.42 16 23 C 0.03 0.97 5.49 -17.43 -0.10 0.87 16 24 N -0.89 -29.30 13.67 55.49 0.76 -28.54 16 25 Si 1.08 26.54 29.92 -169.99 -5.09 21.46 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 C 0.10 1.30 5.09 -2.83 -0.01 1.29 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.40 2.48 8.83 -40.82 -0.36 2.12 16 34 H 0.06 0.45 7.89 -51.93 -0.41 0.04 16 35 H 0.10 0.69 7.34 -51.93 -0.38 0.30 16 36 H 0.36 5.74 6.18 -39.29 -0.24 5.50 16 37 H 0.06 0.43 7.26 -51.93 -0.38 0.05 16 38 H 0.07 0.40 8.01 -51.93 -0.42 -0.02 16 39 H 0.08 0.55 7.81 -51.93 -0.41 0.15 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.89 8.01 -51.93 -0.42 0.47 16 42 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 43 H 0.08 1.75 8.14 -51.92 -0.42 1.32 16 44 H 0.11 2.60 5.66 -51.91 -0.29 2.30 16 45 H 0.28 9.35 7.13 -40.82 -0.29 9.06 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.12 1.59 4.97 -53.75 -0.27 1.32 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -39.40 374.78 -9.09 -48.50 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.26 Total: 7.81 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.41 Total: -1.15 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.04 Total: -53.96 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.17 Total: -22.66 kcal Atomic # 14 Polarization: 26.54 SS G_CDS: -5.09 Total: 21.46 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.11 Total: -5.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.40 -9.09 -48.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108625075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.051 kcal (2) G-P(sol) polarization free energy of solvation -39.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds