Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34782 * 120.00070 * 2 1 4 4 O 1.21285 * 119.99797 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00153 * 179.97438 * 3 2 1 6 6 N 1.46896 * 109.47308 * 186.27115 * 5 3 2 7 7 C 1.46903 * 111.00282 * 186.62085 * 6 5 3 8 8 H 1.08998 * 109.31993 * 37.43503 * 7 6 5 9 9 C 1.53031 * 109.32541 * 277.97168 * 7 6 5 10 10 C 1.53973 * 108.82310 * 295.14197 * 9 7 6 11 11 H 1.08996 * 112.99572 * 169.00190 * 10 9 7 12 12 C 1.56599 * 106.91775 * 293.89686 * 10 9 7 13 13 C 1.55168 * 99.84086 * 72.75101 * 12 10 9 14 14 H 1.09008 * 112.48469 * 163.43783 * 13 12 10 15 15 C 1.52983 * 109.32530 * 157.07926 * 7 6 5 16 16 N 1.47795 * 104.25268 * 41.32686 * 13 12 10 17 17 C 1.34774 * 125.85843 * 153.52647 * 16 13 12 18 18 O 1.21286 * 120.00080 * 5.40367 * 17 16 13 19 19 C 1.50703 * 120.00057 * 185.39894 * 17 16 13 20 20 S 1.80998 * 109.46954 * 185.90179 * 19 17 16 21 21 C 1.76208 * 99.99822 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99878 * 0.02562 * 21 20 19 23 23 C 1.38795 * 119.99804 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00460 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99864 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47331 * 89.99944 * 25 23 21 27 27 H 1.48500 * 109.46897 * 329.99353 * 25 23 21 28 28 H 1.48502 * 109.47054 * 210.00137 * 25 23 21 29 29 C 1.47087 * 108.28544 * 333.79341 * 16 13 12 30 30 H 1.09002 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47152 * 299.99563 * 1 2 3 32 32 H 1.08993 * 109.47489 * 59.99447 * 1 2 3 33 33 H 0.97003 * 120.00356 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.46939 * 66.27002 * 5 3 2 35 35 H 1.08997 * 109.47493 * 306.27437 * 5 3 2 36 36 H 1.00907 * 111.00260 * 310.57592 * 6 5 3 37 37 H 1.08996 * 109.57865 * 54.93798 * 9 7 6 38 38 H 1.08993 * 109.57735 * 175.33983 * 9 7 6 39 39 H 1.09006 * 110.79780 * 315.42126 * 12 10 9 40 40 H 1.08997 * 112.14879 * 190.62644 * 12 10 9 41 41 H 1.09002 * 109.53284 * 305.28890 * 15 7 6 42 42 H 1.09004 * 109.59447 * 185.10187 * 15 7 6 43 43 H 1.08994 * 109.46803 * 65.90025 * 19 17 16 44 44 H 1.09004 * 109.46806 * 305.89990 * 19 17 16 45 45 H 0.97003 * 119.99719 * 0.02562 * 24 23 21 46 46 H 1.08993 * 109.97564 * 120.20359 * 29 16 13 47 47 H 1.09002 * 109.96968 * 241.48827 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1673 0.0006 6 7 4.1354 2.5439 0.1517 7 6 5.5954 2.6032 -0.0003 8 1 5.9061 1.9021 -0.7748 9 6 6.2585 2.2162 1.3235 10 6 5.9036 3.2738 2.3848 11 1 6.1783 2.9717 3.3954 12 6 6.5851 4.6118 1.9405 13 6 5.6735 4.9888 0.7427 14 1 5.7813 6.0331 0.4493 15 6 6.0050 4.0202 -0.4061 16 7 4.3079 4.6722 1.2110 17 6 3.1709 5.2531 0.7797 18 8 3.2054 6.0481 -0.1357 19 6 1.8565 4.9150 1.4348 20 16 0.5080 5.7136 0.5293 21 6 -0.8682 5.1643 1.4828 22 1 -0.7112 4.5258 2.3396 23 6 -2.1541 5.5521 1.1326 24 7 -2.3455 6.3307 0.0886 25 14 -3.6130 4.9703 2.1439 26 1 -3.8821 5.9454 3.2311 27 1 -3.3081 3.6423 2.7341 28 1 -4.8088 4.8607 1.2701 29 6 4.4032 3.6187 2.2331 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.9500 -0.8400 -0.0004 34 1 4.0095 0.7535 -0.9400 35 1 4.0089 0.5595 0.8293 36 1 3.6786 3.1639 -0.5002 37 1 5.8929 1.2406 1.6436 38 1 7.3399 2.1784 1.1929 39 1 7.6105 4.4348 1.6158 40 1 6.5460 5.3718 2.7209 41 1 5.4577 4.3155 -1.3013 42 1 7.0758 4.0475 -0.6081 43 1 1.8623 5.2698 2.4654 44 1 1.7121 3.8346 1.4232 45 1 -1.5879 6.6331 -0.4362 46 1 3.9876 3.9755 3.1754 47 1 3.8670 2.7293 1.9021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108625075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = -56.051188 kcal Electronic energy + Delta-G solvation = -29930.997205 eV Core-core repulsion = 26047.098250 eV Total energy + Delta-G solvation = -3883.898955 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.25996 -40.47253 -39.36738 -36.18904 -35.51680 -34.69893 -33.88845 -32.38531 -31.12604 -29.78654 -28.37713 -27.03983 -26.58049 -25.45070 -23.18482 -22.69826 -21.44635 -20.69096 -20.20807 -19.75978 -18.43790 -17.93665 -17.49339 -16.95048 -16.85037 -16.39285 -16.15202 -15.87771 -15.78511 -15.55847 -15.23799 -14.76252 -14.53019 -14.30562 -14.12646 -13.91994 -13.84529 -13.77619 -13.55225 -13.39383 -13.30667 -13.09266 -12.98014 -12.89308 -12.73518 -12.58955 -12.32018 -11.96573 -11.62338 -11.45827 -11.23150 -11.07682 -11.00394 -10.79299 -10.78136 -10.25468 -10.06086 -9.40995 -8.90580 -8.85616 -8.73232 -6.18437 1.32602 1.48903 1.57990 1.70003 1.76582 1.77838 2.24908 2.30276 2.36613 3.04795 3.18741 3.24843 3.53461 3.69654 3.83822 3.90331 3.99218 4.11158 4.22989 4.28101 4.32144 4.39048 4.41679 4.44525 4.46572 4.55609 4.59952 4.66065 4.74935 4.81978 4.96770 4.98738 4.98929 5.07272 5.17135 5.21344 5.33216 5.39253 5.52060 5.54510 5.64564 5.74328 6.04197 6.15167 6.16993 6.66794 6.68014 7.10994 7.29925 7.45560 8.53068 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.004506 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.646103 B = 6212.961498 C = 7694.712224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.721 5.721 3 C 0.482 3.518 4 O -0.559 6.559 5 C 0.040 3.960 6 N -0.671 5.671 7 C 0.088 3.912 8 H 0.065 0.935 9 C -0.093 4.093 10 C -0.082 4.082 11 H 0.120 0.880 12 C -0.117 4.117 13 C 0.121 3.879 14 H 0.064 0.936 15 C -0.127 4.127 16 N -0.580 5.580 17 C 0.556 3.444 18 O -0.588 6.588 19 C -0.089 4.089 20 S -0.191 6.191 21 C -0.599 4.599 22 H 0.059 0.941 23 C -0.021 4.021 24 N -0.915 5.915 25 Si 1.139 2.861 26 H -0.265 1.265 27 H -0.267 1.267 28 H -0.274 1.274 29 C 0.090 3.910 30 H 0.115 0.885 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.420 0.580 34 H 0.081 0.919 35 H 0.135 0.865 36 H 0.331 0.669 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.257 0.743 46 H 0.027 0.973 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.319 -20.938 5.082 31.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.376 5.376 3 C 0.269 3.731 4 O -0.436 6.436 5 C -0.091 4.091 6 N -0.304 5.304 7 C -0.020 4.020 8 H 0.083 0.917 9 C -0.131 4.131 10 C -0.101 4.101 11 H 0.138 0.862 12 C -0.155 4.155 13 C 0.018 3.982 14 H 0.083 0.917 15 C -0.166 4.166 16 N -0.312 5.312 17 C 0.344 3.656 18 O -0.469 6.469 19 C -0.241 4.241 20 S 0.036 5.964 21 C -0.746 4.746 22 H 0.077 0.923 23 C -0.223 4.223 24 N -0.551 5.551 25 Si 0.956 3.044 26 H -0.191 1.191 27 H -0.192 1.192 28 H -0.199 1.199 29 C -0.032 4.032 30 H 0.134 0.866 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.257 0.743 34 H 0.099 0.901 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.129 0.871 43 H 0.092 0.908 44 H 0.132 0.868 45 H 0.068 0.932 46 H 0.045 0.955 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 21.276 -19.040 4.434 28.894 hybrid contribution 1.098 -0.583 -0.425 1.314 sum 22.374 -19.624 4.009 30.029 Atomic orbital electron populations 1.21470 0.80110 1.03567 1.00328 1.45599 1.07414 1.08792 1.75789 1.21550 0.91799 0.83867 0.75903 1.90940 1.71067 1.32778 1.48847 1.22055 0.89274 0.93232 1.04560 1.61410 1.06215 1.06114 1.56710 1.21676 0.86112 0.95554 0.98707 0.91667 1.21807 1.01003 0.98389 0.91852 1.22766 0.91658 0.94961 1.00703 0.86210 1.23246 0.98984 0.97573 0.95667 1.22361 0.81387 0.98037 0.96415 0.91728 1.22262 1.02871 0.94830 0.96604 1.48227 1.04136 1.37992 1.40871 1.19377 0.84581 0.79478 0.82192 1.90631 1.86836 1.38048 1.31424 1.23073 0.94351 1.05849 1.00780 1.84690 1.00310 1.66765 1.44601 1.23919 0.94745 1.38889 1.17092 0.92299 1.27843 1.03018 0.93726 0.97733 1.70871 1.34246 1.32722 1.17258 0.82714 0.70954 0.76623 0.74062 1.19053 1.19159 1.19927 1.22828 0.99820 0.92913 0.87625 0.86649 0.94761 0.94937 0.74349 0.90144 0.84704 0.84946 0.89724 0.88379 0.86844 0.91402 0.94952 0.87124 0.90789 0.86751 0.93176 0.95510 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.09 10.70 127.77 1.37 3.46 16 2 N -0.72 -13.95 5.71 -484.53 -2.77 -16.72 16 3 C 0.48 12.85 7.87 87.65 0.69 13.54 16 4 O -0.56 -23.28 13.72 -3.04 -0.04 -23.32 16 5 C 0.04 0.67 5.58 85.56 0.48 1.14 16 6 N -0.67 -15.03 1.26 -495.57 -0.62 -15.65 16 7 C 0.09 1.31 2.77 44.92 0.12 1.43 16 8 H 0.07 0.74 7.73 -2.39 -0.02 0.73 16 9 C -0.09 -0.79 5.29 30.93 0.16 -0.62 16 10 C -0.08 -1.06 4.31 -8.63 -0.04 -1.10 16 11 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 12 C -0.12 -1.71 6.27 32.59 0.20 -1.50 16 13 C 0.12 2.95 3.91 45.78 0.18 3.13 16 14 H 0.06 1.91 8.08 -2.38 -0.02 1.89 16 15 C -0.13 -2.46 5.25 30.88 0.16 -2.30 16 16 N -0.58 -18.35 1.73 -784.25 -1.35 -19.70 16 17 C 0.56 25.05 6.52 87.66 0.57 25.62 16 18 O -0.59 -31.60 16.18 -3.05 -0.05 -31.65 16 19 C -0.09 -4.49 5.40 71.24 0.38 -4.10 16 20 S -0.19 -12.04 19.61 -56.49 -1.11 -13.15 16 21 C -0.60 -38.81 9.50 67.95 0.65 -38.17 16 22 H 0.06 3.71 7.80 -2.91 -0.02 3.69 16 23 C -0.02 -1.33 5.49 84.86 0.47 -0.87 16 24 N -0.92 -62.53 13.67 21.65 0.30 -62.24 16 25 Si 1.14 53.83 29.92 68.60 2.05 55.88 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 28 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 29 C 0.09 2.15 5.09 86.85 0.44 2.59 16 30 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.42 3.95 8.83 -92.71 -0.82 3.13 16 34 H 0.08 0.99 7.89 -2.39 -0.02 0.97 16 35 H 0.14 1.21 7.34 -2.39 -0.02 1.20 16 36 H 0.33 11.01 6.18 -89.69 -0.55 10.46 16 37 H 0.08 0.49 7.26 -2.39 -0.02 0.47 16 38 H 0.10 0.38 8.01 -2.39 -0.02 0.36 16 39 H 0.11 0.95 7.81 -2.38 -0.02 0.93 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.03 0.86 8.01 -2.39 -0.02 0.84 16 42 H 0.11 1.37 8.03 -2.39 -0.02 1.36 16 43 H 0.07 3.64 8.14 -2.40 -0.02 3.62 16 44 H 0.11 5.70 5.66 -2.39 -0.01 5.68 16 45 H 0.26 18.45 7.13 -92.71 -0.66 17.79 16 46 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.12 2.98 4.97 -5.98 -0.03 2.95 16 Total: -1.00 -97.55 374.78 1.96 -95.59 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: -0.28 Total: 28.71 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 5.84 Total: 2.26 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -4.45 Total: -114.31 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -0.09 Total: -54.98 kcal Atomic # 14 Polarization: 53.83 SS G_CDS: 2.05 Total: 55.88 kcal Atomic # 16 Polarization: -12.04 SS G_CDS: -1.11 Total: -13.15 kcal Total: -97.55 1.96 -95.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108625075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.538 kcal (2) G-P(sol) polarization free energy of solvation -97.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds