Wall clock time and date at job start Sat Apr 11 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 120.00067 * 2 1 4 4 O 1.21282 * 120.00383 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99974 * 179.97438 * 3 2 1 6 6 N 1.46900 * 109.46964 * 186.05973 * 5 3 2 7 7 C 1.48535 * 111.00171 * 176.49390 * 6 5 3 8 8 C 1.54314 * 104.67539 * 200.80433 * 7 6 5 9 9 H 1.08995 * 111.82625 * 261.51420 * 8 7 6 10 10 C 1.54165 * 108.86447 * 137.48735 * 8 7 6 11 11 C 1.54843 * 104.32551 * 223.67936 * 10 8 7 12 12 C 1.54838 * 102.73453 * 38.18373 * 11 10 8 13 13 C 1.54161 * 104.32410 * 321.81467 * 12 11 10 14 14 N 1.46501 * 111.79834 * 261.29195 * 13 12 11 15 15 C 1.34774 * 120.00165 * 299.23057 * 14 13 12 16 16 O 1.21281 * 120.00241 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99821 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.47093 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00180 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99858 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00036 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00036 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99995 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47476 * 89.99476 * 23 21 19 25 25 H 1.48495 * 109.47068 * 210.00186 * 23 21 19 26 26 H 1.48507 * 109.46737 * 329.99714 * 23 21 19 27 27 C 1.48528 * 111.00221 * 61.08681 * 6 5 3 28 28 H 1.08995 * 109.46854 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47257 * 300.00492 * 1 2 3 30 30 H 1.09001 * 109.46734 * 60.00233 * 1 2 3 31 31 H 0.97004 * 120.00064 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47366 * 66.05890 * 5 3 2 33 33 H 1.08998 * 109.47442 * 306.05761 * 5 3 2 34 34 H 1.09006 * 110.39636 * 82.00190 * 7 6 5 35 35 H 1.09000 * 110.39352 * 319.60741 * 7 6 5 36 36 H 1.08999 * 110.46200 * 342.39242 * 10 8 7 37 37 H 1.08996 * 110.45880 * 104.96712 * 10 8 7 38 38 H 1.09002 * 110.75646 * 156.49312 * 11 10 8 39 39 H 1.08995 * 110.75847 * 279.87243 * 11 10 8 40 40 H 1.09002 * 110.46602 * 80.52712 * 12 11 10 41 41 H 1.09001 * 110.46275 * 203.10734 * 12 11 10 42 42 H 0.97005 * 119.99420 * 119.22664 * 14 13 12 43 43 H 1.08999 * 109.47482 * 300.00401 * 17 15 14 44 44 H 1.09006 * 109.46913 * 60.00525 * 17 15 14 45 45 H 0.97001 * 119.99508 * 180.02562 * 22 21 19 46 46 H 1.08999 * 110.39763 * 40.39502 * 27 6 5 47 47 H 1.08994 * 110.39740 * 277.99029 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2176 -0.0005 5 6 3.6459 1.1672 0.0006 6 7 4.1355 2.5445 0.1467 7 6 5.6178 2.5759 0.2359 8 6 5.9408 3.9292 0.9032 9 1 6.2164 4.6871 0.1700 10 6 7.0512 3.7159 1.9512 11 6 6.5817 4.5345 3.1788 12 6 5.0518 4.2959 3.1834 13 6 4.6606 4.3007 1.6923 14 7 4.1190 5.5967 1.2761 15 6 3.0037 6.0796 1.8587 16 8 2.4481 5.4409 2.7272 17 6 2.4471 7.4130 1.4309 18 16 0.9571 7.7807 2.3905 19 6 0.5299 9.3464 1.7046 20 1 1.1406 9.7797 0.9263 21 6 -0.5914 10.0229 2.1644 22 7 -1.3360 9.4945 3.1126 23 14 -1.0447 11.6826 1.4366 24 1 -1.9476 11.4836 0.2746 25 1 -1.7346 12.5022 2.4649 26 1 0.1879 12.3813 0.9919 27 6 3.6804 3.1379 1.4299 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8401 0.0004 32 1 4.0096 0.7499 -0.9385 33 1 4.0089 0.5625 0.8316 34 1 6.0594 2.5282 -0.7596 35 1 5.9788 1.7526 0.8523 36 1 7.1357 2.6598 2.2071 37 1 8.0029 4.0965 1.5806 38 1 7.0350 4.1530 4.0938 39 1 6.8073 5.5927 3.0468 40 1 4.8178 3.3322 3.6357 41 1 4.5423 5.1005 3.7136 42 1 4.5633 6.1074 0.5812 43 1 3.1918 8.1900 1.6035 44 1 2.1966 7.3789 0.3706 45 1 -2.1199 9.9672 3.4336 46 1 3.7409 2.4018 2.2315 47 1 2.6618 3.5139 1.3345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111600084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:01 Heat of formation + Delta-G solvation = -59.204634 kcal Electronic energy + Delta-G solvation = -28326.751210 eV Core-core repulsion = 24442.715512 eV Total energy + Delta-G solvation = -3884.035699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92435 -39.56608 -38.17085 -35.65618 -34.64214 -33.38197 -32.34208 -30.69469 -30.30456 -28.57732 -27.25991 -25.77979 -25.41288 -25.00740 -22.10315 -21.14403 -20.43124 -19.94484 -19.18598 -17.79193 -17.34989 -16.84807 -16.24265 -15.98514 -15.88048 -15.29710 -14.98912 -14.80857 -14.72738 -14.34653 -14.21286 -13.93156 -13.54010 -13.37735 -13.11670 -12.76055 -12.62506 -12.49975 -12.44433 -12.37201 -11.93458 -11.76455 -11.50295 -11.23730 -11.17105 -10.99737 -10.95120 -10.92568 -10.84120 -10.71413 -10.67246 -9.85923 -9.72049 -9.28547 -9.12240 -8.98384 -8.68033 -8.56784 -8.11649 -6.38284 -6.13136 -3.81977 2.56290 2.91286 3.14813 3.27439 3.28881 3.33976 3.39376 3.82035 3.84038 4.14431 4.29068 4.34153 4.55138 4.59733 4.92114 4.96909 4.98428 5.04981 5.09551 5.14641 5.18841 5.21823 5.31042 5.33894 5.37324 5.44773 5.53106 5.59082 5.66971 5.67697 5.70353 5.83972 5.88119 5.98272 6.04200 6.16142 6.18456 6.24893 6.29270 6.37151 6.64509 6.69902 6.97137 7.30209 7.68067 7.91881 8.15943 8.43929 8.81536 9.32170 10.94330 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003190 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.912840 B = 8775.134094 C =10706.307022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.742 5.742 3 C 0.504 3.496 4 O -0.502 6.502 5 C 0.027 3.973 6 N -0.492 5.492 7 C 0.037 3.963 8 C -0.096 4.096 9 H 0.094 0.906 10 C -0.117 4.117 11 C -0.124 4.124 12 C -0.126 4.126 13 C 0.182 3.818 14 N -0.717 5.717 15 C 0.536 3.464 16 O -0.514 6.514 17 C -0.153 4.153 18 S -0.058 6.058 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.917 3.083 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.272 1.272 27 C 0.030 3.970 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.398 0.602 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.398 0.602 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.267 0.733 46 H 0.045 0.955 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.538 -21.391 -6.429 28.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.396 5.396 3 C 0.288 3.712 4 O -0.375 6.375 5 C -0.105 4.105 6 N -0.216 5.216 7 C -0.091 4.091 8 C -0.115 4.115 9 H 0.112 0.888 10 C -0.155 4.155 11 C -0.162 4.162 12 C -0.165 4.165 13 C 0.094 3.906 14 N -0.371 5.371 15 C 0.322 3.678 16 O -0.388 6.388 17 C -0.303 4.303 18 S 0.168 5.832 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.098 4.098 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.231 0.769 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.232 0.768 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.759 -21.355 -5.331 27.070 hybrid contribution 0.960 0.986 -1.230 1.846 sum 16.720 -20.369 -6.561 27.157 Atomic orbital electron populations 1.21527 0.79346 1.01954 1.02775 1.45778 1.07874 1.08467 1.77466 1.20566 0.89915 0.83907 0.76766 1.90818 1.69794 1.30719 1.46148 1.22155 0.92738 0.92377 1.03203 1.65322 1.06280 1.15113 1.34901 1.23329 0.88630 0.96303 1.00830 1.22718 0.94228 0.97316 0.97235 0.88789 1.22492 0.97487 1.00439 0.95118 1.22534 0.95693 1.00296 0.97647 1.22746 0.95384 1.03168 0.95183 1.21255 0.91615 0.83888 0.93856 1.45853 1.28805 1.20259 1.42133 1.20201 0.79272 0.87035 0.81267 1.90683 1.58239 1.59417 1.30439 1.23530 1.05144 0.96089 1.05576 1.85361 1.23837 1.24798 1.49177 1.22888 1.14693 1.05195 1.25431 0.91013 1.24976 0.95243 0.98458 0.94907 1.70027 1.15609 1.38259 1.26504 0.86187 0.78619 0.82087 0.78719 1.20300 1.20818 1.19722 1.23714 1.02529 0.95041 0.88470 0.90848 0.91985 0.92133 0.76899 0.87730 0.92084 0.89849 0.93327 0.91348 0.91275 0.91434 0.91244 0.91113 0.89823 0.76804 0.89483 0.89303 0.92295 0.93677 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.70 59.85 0.64 1.41 16 2 N -0.74 -6.43 5.71 -67.08 -0.38 -6.81 16 3 C 0.50 6.26 7.48 -10.98 -0.08 6.18 16 4 O -0.50 -9.17 14.43 5.56 0.08 -9.09 16 5 C 0.03 0.25 5.39 -4.98 -0.03 0.23 16 6 N -0.49 -5.89 5.18 -231.53 -1.20 -7.09 16 7 C 0.04 0.32 6.03 -2.23 -0.01 0.31 16 8 C -0.10 -0.90 3.68 -88.32 -0.32 -1.22 16 9 H 0.09 0.82 7.77 -51.93 -0.40 0.42 16 10 C -0.12 -0.91 6.36 -25.15 -0.16 -1.07 16 11 C -0.12 -1.19 6.90 -24.79 -0.17 -1.37 16 12 C -0.13 -1.63 5.62 -25.16 -0.14 -1.77 16 13 C 0.18 2.39 0.92 -129.51 -0.12 2.27 16 14 N -0.72 -10.78 5.27 -45.48 -0.24 -11.02 16 15 C 0.54 10.71 6.91 -10.99 -0.08 10.64 16 16 O -0.51 -12.04 13.38 5.56 0.07 -11.97 16 17 C -0.15 -3.31 6.16 36.01 0.22 -3.09 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.53 -15.80 9.50 30.94 0.29 -15.50 16 20 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 21 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 22 N -0.87 -26.97 13.22 55.49 0.73 -26.23 16 23 Si 0.92 22.10 29.55 -169.99 -5.02 17.08 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.03 0.45 4.44 -2.23 -0.01 0.44 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 1.90 8.83 -40.82 -0.36 1.54 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.44 7.98 -51.93 -0.41 0.03 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.35 6.96 -51.93 -0.36 -0.01 16 36 H 0.07 0.47 7.18 -51.93 -0.37 0.10 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.89 7.18 -51.93 -0.37 0.51 16 41 H 0.08 1.36 6.67 -51.93 -0.35 1.01 16 42 H 0.40 4.93 8.33 -40.82 -0.34 4.59 16 43 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 44 H 0.09 1.85 8.14 -51.91 -0.42 1.42 16 45 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 46 H 0.05 0.63 7.00 -51.93 -0.36 0.27 16 47 H 0.11 2.29 5.21 -51.93 -0.27 2.02 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -38.81 384.86 -9.81 -48.62 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.38 Total: 5.09 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.06 Total: -0.50 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -1.09 Total: -51.16 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.15 Total: -21.06 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.81 -9.81 -48.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111600084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.588 kcal (2) G-P(sol) polarization free energy of solvation -38.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds