Wall clock time and date at job start Sat Apr 11 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 120.00067 * 2 1 4 4 O 1.21282 * 120.00383 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99974 * 179.97438 * 3 2 1 6 6 N 1.46900 * 109.46964 * 186.05973 * 5 3 2 7 7 C 1.48535 * 111.00171 * 176.49390 * 6 5 3 8 8 C 1.54314 * 104.67539 * 200.80433 * 7 6 5 9 9 H 1.08995 * 111.82625 * 261.51420 * 8 7 6 10 10 C 1.54165 * 108.86447 * 137.48735 * 8 7 6 11 11 C 1.54843 * 104.32551 * 223.67936 * 10 8 7 12 12 C 1.54838 * 102.73453 * 38.18373 * 11 10 8 13 13 C 1.54161 * 104.32410 * 321.81467 * 12 11 10 14 14 N 1.46501 * 111.79834 * 261.29195 * 13 12 11 15 15 C 1.34774 * 120.00165 * 299.23057 * 14 13 12 16 16 O 1.21281 * 120.00241 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99821 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.47093 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00180 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99858 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00036 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00036 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99995 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47476 * 89.99476 * 23 21 19 25 25 H 1.48495 * 109.47068 * 210.00186 * 23 21 19 26 26 H 1.48507 * 109.46737 * 329.99714 * 23 21 19 27 27 C 1.48528 * 111.00221 * 61.08681 * 6 5 3 28 28 H 1.08995 * 109.46854 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47257 * 300.00492 * 1 2 3 30 30 H 1.09001 * 109.46734 * 60.00233 * 1 2 3 31 31 H 0.97004 * 120.00064 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47366 * 66.05890 * 5 3 2 33 33 H 1.08998 * 109.47442 * 306.05761 * 5 3 2 34 34 H 1.09006 * 110.39636 * 82.00190 * 7 6 5 35 35 H 1.09000 * 110.39352 * 319.60741 * 7 6 5 36 36 H 1.08999 * 110.46200 * 342.39242 * 10 8 7 37 37 H 1.08996 * 110.45880 * 104.96712 * 10 8 7 38 38 H 1.09002 * 110.75646 * 156.49312 * 11 10 8 39 39 H 1.08995 * 110.75847 * 279.87243 * 11 10 8 40 40 H 1.09002 * 110.46602 * 80.52712 * 12 11 10 41 41 H 1.09001 * 110.46275 * 203.10734 * 12 11 10 42 42 H 0.97005 * 119.99420 * 119.22664 * 14 13 12 43 43 H 1.08999 * 109.47482 * 300.00401 * 17 15 14 44 44 H 1.09006 * 109.46913 * 60.00525 * 17 15 14 45 45 H 0.97001 * 119.99508 * 180.02562 * 22 21 19 46 46 H 1.08999 * 110.39763 * 40.39502 * 27 6 5 47 47 H 1.08994 * 110.39740 * 277.99029 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2176 -0.0005 5 6 3.6459 1.1672 0.0006 6 7 4.1355 2.5445 0.1467 7 6 5.6178 2.5759 0.2359 8 6 5.9408 3.9292 0.9032 9 1 6.2164 4.6871 0.1700 10 6 7.0512 3.7159 1.9512 11 6 6.5817 4.5345 3.1788 12 6 5.0518 4.2959 3.1834 13 6 4.6606 4.3007 1.6923 14 7 4.1190 5.5967 1.2761 15 6 3.0037 6.0796 1.8587 16 8 2.4481 5.4409 2.7272 17 6 2.4471 7.4130 1.4309 18 16 0.9571 7.7807 2.3905 19 6 0.5299 9.3464 1.7046 20 1 1.1406 9.7797 0.9263 21 6 -0.5914 10.0229 2.1644 22 7 -1.3360 9.4945 3.1126 23 14 -1.0447 11.6826 1.4366 24 1 -1.9476 11.4836 0.2746 25 1 -1.7346 12.5022 2.4649 26 1 0.1879 12.3813 0.9919 27 6 3.6804 3.1379 1.4299 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8401 0.0004 32 1 4.0096 0.7499 -0.9385 33 1 4.0089 0.5625 0.8316 34 1 6.0594 2.5282 -0.7596 35 1 5.9788 1.7526 0.8523 36 1 7.1357 2.6598 2.2071 37 1 8.0029 4.0965 1.5806 38 1 7.0350 4.1530 4.0938 39 1 6.8073 5.5927 3.0468 40 1 4.8178 3.3322 3.6357 41 1 4.5423 5.1005 3.7136 42 1 4.5633 6.1074 0.5812 43 1 3.1918 8.1900 1.6035 44 1 2.1966 7.3789 0.3706 45 1 -2.1199 9.9672 3.4336 46 1 3.7409 2.4018 2.2315 47 1 2.6618 3.5139 1.3345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111600084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:00 Heat of formation + Delta-G solvation = -92.114970 kcal Electronic energy + Delta-G solvation = -28328.178310 eV Core-core repulsion = 24442.715512 eV Total energy + Delta-G solvation = -3885.462798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.94527 -40.62118 -39.53141 -36.52502 -35.59362 -34.72230 -34.58653 -31.62812 -31.45470 -29.90648 -28.24042 -27.65014 -26.61510 -25.85931 -23.19397 -22.01260 -21.38133 -21.00394 -20.40604 -19.75503 -18.37752 -17.87962 -17.49340 -17.08655 -16.90794 -16.89024 -16.41710 -16.18783 -15.91441 -15.70108 -15.35982 -15.12540 -14.71134 -14.54110 -14.33153 -14.20953 -13.83667 -13.69817 -13.40568 -13.17950 -13.13769 -13.03938 -12.89893 -12.83009 -12.57716 -12.44317 -12.25064 -12.02006 -11.78401 -11.71910 -11.59979 -11.49215 -11.15616 -10.91060 -10.72714 -10.28967 -10.16674 -9.98748 -9.41981 -8.67569 -8.35698 -6.13915 1.25627 1.41134 1.45372 1.56619 1.63950 1.67668 2.16859 2.25542 2.31333 2.97962 2.99744 3.27694 3.34479 3.51020 3.80720 3.86269 3.96617 4.14078 4.21980 4.27109 4.29601 4.34375 4.36659 4.42068 4.46007 4.47364 4.48974 4.55492 4.61956 4.75081 4.81235 4.90688 4.93727 4.99107 5.11765 5.14536 5.23512 5.27680 5.39655 5.44386 5.46150 5.63993 5.79341 5.94109 6.18377 6.57302 6.59574 7.04841 7.32262 7.33096 8.73886 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003190 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.912840 B = 8775.134094 C =10706.307022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.724 5.724 3 C 0.493 3.507 4 O -0.574 6.574 5 C 0.030 3.970 6 N -0.514 5.514 7 C 0.041 3.959 8 C -0.089 4.089 9 H 0.107 0.893 10 C -0.105 4.105 11 C -0.118 4.118 12 C -0.128 4.128 13 C 0.171 3.829 14 N -0.695 5.695 15 C 0.535 3.465 16 O -0.556 6.556 17 C -0.129 4.129 18 S -0.149 6.149 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.257 1.257 27 C 0.039 3.961 28 H 0.116 0.884 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.421 0.579 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.413 0.587 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.271 0.729 46 H 0.043 0.957 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.131 -22.539 -8.575 32.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.378 5.378 3 C 0.279 3.721 4 O -0.452 6.452 5 C -0.101 4.101 6 N -0.238 5.238 7 C -0.086 4.086 8 C -0.108 4.108 9 H 0.125 0.875 10 C -0.143 4.143 11 C -0.156 4.156 12 C -0.167 4.167 13 C 0.084 3.916 14 N -0.348 5.348 15 C 0.321 3.679 16 O -0.434 6.434 17 C -0.280 4.280 18 S 0.078 5.922 19 C -0.696 4.696 20 H 0.099 0.901 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.181 1.181 27 C -0.089 4.089 28 H 0.135 0.865 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.258 0.742 32 H 0.158 0.842 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.250 0.750 43 H 0.127 0.873 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 19.427 -22.582 -7.511 30.721 hybrid contribution -0.145 1.188 -0.569 1.325 sum 19.282 -21.395 -8.080 29.913 Atomic orbital electron populations 1.21577 0.79564 1.04064 1.00680 1.45683 1.07934 1.08698 1.75531 1.21358 0.91603 0.83637 0.75468 1.90806 1.71380 1.33333 1.49663 1.22290 0.90098 0.91671 1.06029 1.65225 1.08614 1.16933 1.33035 1.23464 0.86220 0.96346 1.02582 1.22783 0.92311 0.98227 0.97497 0.87520 1.22476 0.97576 1.01144 0.93062 1.22513 0.92716 1.00725 0.99640 1.22708 0.97883 1.01492 0.94604 1.21570 0.93180 0.82045 0.94824 1.45645 1.26897 1.21043 1.41248 1.19952 0.80408 0.86324 0.81217 1.90668 1.59872 1.60276 1.32561 1.23367 1.02125 0.97977 1.04529 1.85548 1.28726 1.25960 1.51987 1.23212 1.15424 1.05148 1.25801 0.90100 1.26164 0.94817 1.03121 0.95084 1.70197 1.16230 1.40358 1.28072 0.84926 0.78805 0.76125 0.77933 1.19366 1.19979 1.18077 1.23372 0.99805 0.95735 0.90033 0.86510 0.94708 0.93745 0.74211 0.84245 0.89182 0.87495 0.90968 0.89685 0.88757 0.90139 0.91637 0.91229 0.94092 0.75033 0.87291 0.88304 0.91970 0.93924 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 10.70 127.77 1.37 2.89 16 2 N -0.72 -12.00 5.71 -484.52 -2.77 -14.77 16 3 C 0.49 12.34 7.48 87.66 0.66 13.00 16 4 O -0.57 -22.54 14.43 -3.04 -0.04 -22.59 16 5 C 0.03 0.49 5.39 85.56 0.46 0.95 16 6 N -0.51 -11.44 5.18 -886.44 -4.59 -16.03 16 7 C 0.04 0.53 6.03 86.43 0.52 1.05 16 8 C -0.09 -1.36 3.68 -9.30 -0.03 -1.40 16 9 H 0.11 1.41 7.77 -2.39 -0.02 1.39 16 10 C -0.10 -1.16 6.36 31.62 0.20 -0.96 16 11 C -0.12 -2.02 6.90 31.85 0.22 -1.80 16 12 C -0.13 -3.36 5.62 31.61 0.18 -3.18 16 13 C 0.17 4.43 0.92 5.10 0.00 4.43 16 14 N -0.70 -21.18 5.27 -416.20 -2.19 -23.37 16 15 C 0.54 22.56 6.91 87.66 0.61 23.17 16 16 O -0.56 -28.27 13.38 -3.03 -0.04 -28.32 16 17 C -0.13 -5.77 6.16 71.24 0.44 -5.34 16 18 S -0.15 -8.95 20.57 -56.49 -1.16 -10.12 16 19 C -0.55 -33.26 9.50 67.95 0.65 -32.61 16 20 H 0.08 4.58 7.80 -2.91 -0.02 4.56 16 21 C 0.01 0.76 5.49 84.86 0.47 1.22 16 22 N -0.91 -58.53 13.22 21.65 0.29 -58.25 16 23 Si 1.00 45.67 29.55 68.60 2.03 47.69 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 27 C 0.04 1.19 4.44 86.44 0.38 1.57 16 28 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.42 2.98 8.83 -92.71 -0.82 2.16 16 32 H 0.14 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.09 0.97 7.98 -2.39 -0.02 0.95 16 34 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.07 0.64 6.96 -2.39 -0.02 0.62 16 36 H 0.08 0.72 7.18 -2.39 -0.02 0.70 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.79 7.18 -2.39 -0.02 1.77 16 41 H 0.04 1.42 6.67 -2.39 -0.02 1.40 16 42 H 0.41 9.83 8.33 -92.70 -0.77 9.05 16 43 H 0.11 4.36 8.14 -2.40 -0.02 4.34 16 44 H 0.10 4.20 8.14 -2.39 -0.02 4.18 16 45 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 46 H 0.04 1.24 7.00 -2.39 -0.02 1.22 16 47 H 0.05 2.39 5.21 -2.39 -0.01 2.37 16 Total: -1.00 -94.52 384.86 -2.97 -97.49 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.59 Total: 25.25 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 6.11 Total: 3.00 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -9.27 Total: -112.42 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.08 Total: -50.90 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.16 Total: -10.12 kcal Total: -94.52 -2.97 -97.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111600084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.370 kcal (2) G-P(sol) polarization free energy of solvation -94.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds