Wall clock time and date at job start Sat Apr 11 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34784 * 119.99864 * 2 1 4 4 O 1.21279 * 119.99925 * 179.72608 * 3 2 1 5 5 C 1.50700 * 119.99961 * 359.72839 * 3 2 1 6 6 N 1.46895 * 109.47051 * 180.02562 * 5 3 2 7 7 C 1.46897 * 110.99610 * 294.29520 * 6 5 3 8 8 C 1.53249 * 109.33898 * 172.74818 * 7 6 5 9 9 N 1.47081 * 108.51702 * 53.83346 * 8 7 6 10 10 C 1.34775 * 120.87817 * 128.79343 * 9 8 7 11 11 O 1.21285 * 119.99939 * 180.02562 * 10 9 8 12 12 C 1.50696 * 120.00113 * 0.02562 * 10 9 8 13 13 S 1.81009 * 109.47372 * 179.97438 * 12 10 9 14 14 C 1.76199 * 100.00205 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99746 * 0.02562 * 14 13 12 16 16 C 1.38793 * 119.99993 * 180.02562 * 14 13 12 17 17 N 1.31630 * 120.00200 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00004 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.46908 * 89.99773 * 18 16 14 20 20 H 1.48497 * 109.46974 * 209.99814 * 18 16 14 21 21 H 1.48494 * 109.47143 * 330.00037 * 18 16 14 22 22 C 1.47074 * 118.23862 * 308.81228 * 9 8 7 23 23 C 1.46901 * 110.99741 * 170.00366 * 6 5 3 24 24 C 1.46494 * 120.00444 * 179.72710 * 2 1 3 25 25 C 1.53001 * 117.49583 * 8.89792 * 24 2 1 26 26 C 1.52995 * 117.49860 * 300.27567 * 24 2 1 27 27 H 1.09000 * 109.47297 * 90.00011 * 1 2 3 28 28 H 1.09002 * 109.47192 * 209.99937 * 1 2 3 29 29 H 1.08996 * 109.47342 * 329.99648 * 1 2 3 30 30 H 1.09004 * 109.46932 * 300.00223 * 5 3 2 31 31 H 1.08997 * 109.47392 * 59.99562 * 5 3 2 32 32 H 1.08994 * 109.49799 * 292.71104 * 7 6 5 33 33 H 1.09004 * 109.49383 * 52.79440 * 7 6 5 34 34 H 1.08993 * 109.62896 * 294.12488 * 8 7 6 35 35 H 1.09003 * 109.62390 * 173.54423 * 8 7 6 36 36 H 1.08994 * 109.47538 * 299.99916 * 12 10 9 37 37 H 1.09004 * 109.47367 * 59.99769 * 12 10 9 38 38 H 0.97000 * 120.00267 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.62910 * 291.47779 * 22 9 8 40 40 H 1.09000 * 109.78781 * 170.98717 * 22 9 8 41 41 H 1.09002 * 109.49192 * 307.20715 * 23 6 5 42 42 H 1.08994 * 109.50001 * 67.28892 * 23 6 5 43 43 H 1.09002 * 115.55282 * 154.60236 * 24 2 1 44 44 H 1.08997 * 117.50369 * 359.97438 * 25 24 2 45 45 H 1.09000 * 117.50455 * 145.02266 * 25 24 2 46 46 H 1.09001 * 117.50442 * 214.97580 * 26 24 2 47 47 H 1.09001 * 117.50390 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0050 5 6 1.3853 2.4724 -0.0062 6 7 2.3398 3.5889 -0.0055 7 6 3.1061 3.6255 1.2472 8 6 4.2088 4.6840 1.1369 9 7 3.5928 5.9614 0.7470 10 6 3.8401 7.0893 1.4423 11 8 3.3231 8.1339 1.1070 12 6 4.7589 7.0523 2.6361 13 16 4.8882 8.7108 3.3496 14 6 5.9890 8.3840 4.6861 15 1 6.3619 7.3831 4.8461 16 6 6.3769 9.4128 5.5331 17 7 7.1989 9.1686 6.5318 18 14 5.7326 11.1441 5.2557 19 1 4.4694 11.3296 6.0144 20 1 6.7407 12.1285 5.7245 21 1 5.4752 11.3505 3.8079 22 6 2.6994 5.9754 -0.4212 23 6 1.6562 4.8660 -0.2495 24 6 2.1975 -1.2686 0.0060 25 6 1.3896 -2.5518 -0.1978 26 6 1.9583 -2.2169 1.1826 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 0.7623 2.5279 -0.8989 31 1 0.7549 2.5322 0.8810 32 1 2.4411 3.8778 2.0731 33 1 3.5560 2.6491 1.4271 34 1 4.9329 4.3809 0.3807 35 1 4.7063 4.7962 2.1002 36 1 4.3582 6.3658 3.3819 37 1 5.7468 6.7134 2.3241 38 1 7.4703 9.8877 7.1235 39 1 3.2785 5.7964 -1.3271 40 1 2.1988 6.9410 -0.4914 41 1 1.0544 4.7893 -1.1551 42 1 1.0114 5.1011 0.5973 43 1 3.2019 -1.2335 -0.4159 44 1 0.3130 -2.4522 -0.3359 45 1 1.8623 -3.3613 -0.7540 46 1 2.8051 -2.8061 1.5345 47 1 1.2561 -1.8968 1.9524 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112628914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:02 Heat of formation + Delta-G solvation = -38.299153 kcal Electronic energy + Delta-G solvation = -27309.657517 eV Core-core repulsion = 23426.528348 eV Total energy + Delta-G solvation = -3883.129169 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50653 -40.88296 -39.07213 -38.02409 -35.67117 -34.78572 -34.68279 -32.67708 -31.04415 -29.65884 -27.93834 -27.87640 -26.41270 -24.78045 -23.34249 -23.00550 -22.29785 -20.43595 -20.08524 -19.53032 -18.47131 -18.20689 -17.46796 -17.20302 -17.00909 -16.83415 -16.68082 -16.20561 -15.91819 -15.74802 -15.53221 -15.21449 -14.95490 -14.74257 -14.68008 -14.36475 -14.06789 -13.55553 -13.44380 -13.34686 -13.30243 -13.20496 -13.02575 -12.97985 -12.68701 -12.42465 -12.37513 -12.26189 -12.23857 -11.87747 -11.86419 -11.48411 -11.18082 -10.97348 -10.80601 -10.55116 -9.88265 -9.45454 -9.33532 -9.01945 -8.52405 -6.23979 0.95041 1.30596 1.44490 1.47393 1.52759 1.56777 1.79388 2.02085 2.24363 2.64986 2.82941 2.85478 2.91840 3.46751 3.53423 3.76860 3.81701 3.95267 4.02173 4.02797 4.09420 4.13007 4.15906 4.22863 4.27372 4.36055 4.39593 4.43201 4.54490 4.63625 4.73695 4.74506 4.78524 4.81126 4.84054 4.90847 5.00955 5.06408 5.18075 5.42017 5.54166 5.69702 5.79735 5.91309 6.10198 6.21200 6.37945 6.92222 7.02693 7.19113 8.60035 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.002096 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.764020 B =13357.551594 C =14288.772747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.591 5.591 3 C 0.510 3.490 4 O -0.562 6.562 5 C 0.044 3.956 6 N -0.534 5.534 7 C 0.047 3.953 8 C 0.113 3.887 9 N -0.608 5.608 10 C 0.537 3.463 11 O -0.560 6.560 12 C -0.108 4.108 13 S -0.171 6.171 14 C -0.530 4.530 15 H 0.061 0.939 16 C 0.045 3.955 17 N -0.916 5.916 18 Si 0.916 3.084 19 H -0.261 1.261 20 H -0.258 1.258 21 H -0.237 1.237 22 C 0.114 3.886 23 C 0.053 3.947 24 C 0.055 3.945 25 C -0.162 4.162 26 C -0.194 4.194 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.277 0.723 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.040 0.960 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.427 -24.987 -17.200 36.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.323 5.323 3 C 0.299 3.701 4 O -0.440 6.440 5 C -0.086 4.086 6 N -0.259 5.259 7 C -0.082 4.082 8 C -0.010 4.010 9 N -0.342 5.342 10 C 0.324 3.676 11 O -0.438 6.438 12 C -0.259 4.259 13 S 0.056 5.944 14 C -0.677 4.677 15 H 0.079 0.921 16 C -0.161 4.161 17 N -0.554 5.554 18 Si 0.738 3.262 19 H -0.185 1.185 20 H -0.182 1.182 21 H -0.161 1.161 22 C -0.009 4.009 23 C -0.075 4.075 24 C -0.050 4.050 25 C -0.199 4.199 26 C -0.233 4.233 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.153 0.847 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.139 0.861 42 H 0.058 0.942 43 H 0.128 0.872 44 H 0.135 0.865 45 H 0.131 0.869 46 H 0.120 0.880 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.132 -23.462 -17.936 35.188 hybrid contribution 0.530 -0.544 1.609 1.779 sum -18.601 -24.006 -16.327 34.480 Atomic orbital electron populations 1.22148 0.77048 1.04858 1.03726 1.47413 1.08035 1.04147 1.72715 1.20994 0.87841 0.85874 0.75413 1.90675 1.15766 1.87479 1.50119 1.22072 0.93796 0.87400 1.05375 1.61557 1.26058 1.03037 1.35271 1.22493 0.95670 1.00063 0.89964 1.21941 0.95760 0.81317 1.02004 1.48161 1.47863 1.07988 1.30204 1.19957 0.80950 0.83429 0.83257 1.90664 1.52405 1.31325 1.69455 1.23278 1.02797 1.01209 0.98607 1.84640 1.62170 1.11855 1.35739 1.22445 1.31886 0.98931 1.14485 0.92100 1.25585 0.93989 1.02967 0.93524 1.70018 1.33560 1.35101 1.16723 0.85847 0.79367 0.79517 0.81510 1.18541 1.18221 1.16107 1.21819 0.91850 0.99766 0.87417 1.22502 0.94841 0.87226 1.02924 1.21610 0.97496 0.81229 1.04661 1.23467 1.01087 0.96586 0.98810 1.23429 1.04283 1.03041 0.92523 0.90473 0.89569 0.89305 0.84736 0.89903 0.94627 0.88649 0.89978 0.89054 0.87318 0.87382 0.91325 0.89973 0.89434 0.86126 0.94202 0.87234 0.86479 0.86939 0.88038 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.23 9.49 127.77 1.21 1.44 16 2 N -0.59 -7.18 3.21 -822.62 -2.64 -9.82 16 3 C 0.51 8.95 7.34 87.66 0.64 9.59 16 4 O -0.56 -15.06 14.04 -3.03 -0.04 -15.10 16 5 C 0.04 0.53 4.01 85.56 0.34 0.87 16 6 N -0.53 -9.62 4.37 -899.81 -3.93 -13.55 16 7 C 0.05 1.01 5.26 86.39 0.45 1.46 16 8 C 0.11 2.75 6.50 86.35 0.56 3.32 16 9 N -0.61 -17.22 3.01 -817.92 -2.46 -19.68 16 10 C 0.54 20.00 7.73 87.66 0.68 20.68 16 11 O -0.56 -24.74 15.32 -3.04 -0.05 -24.78 16 12 C -0.11 -4.37 4.52 71.23 0.32 -4.04 16 13 S -0.17 -8.88 18.55 -56.49 -1.05 -9.92 16 14 C -0.53 -31.52 10.04 67.95 0.68 -30.83 16 15 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 16 C 0.04 2.67 5.50 84.86 0.47 3.14 16 17 N -0.92 -56.49 13.97 21.65 0.30 -56.19 16 18 Si 0.92 45.59 27.74 68.60 1.90 47.49 16 19 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 22 C 0.11 2.57 6.59 86.35 0.57 3.14 16 23 C 0.05 0.85 5.62 86.39 0.49 1.33 16 24 C 0.05 0.72 6.21 44.99 0.28 1.00 16 25 C -0.16 -1.08 9.72 30.59 0.30 -0.78 16 26 C -0.19 -1.92 10.12 30.59 0.31 -1.61 16 27 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.09 0.13 6.31 -2.39 -0.02 0.11 16 29 H 0.09 0.09 6.44 -2.39 -0.02 0.08 16 30 H 0.13 0.83 7.94 -2.38 -0.02 0.82 16 31 H 0.08 0.73 7.38 -2.39 -0.02 0.72 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 2.29 5.76 -2.39 -0.01 2.28 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.09 2.25 6.02 -2.39 -0.01 2.23 16 36 H 0.11 4.09 7.66 -2.40 -0.02 4.07 16 37 H 0.11 4.13 8.00 -2.39 -0.02 4.11 16 38 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 2.20 7.07 -2.39 -0.02 2.18 16 41 H 0.12 1.17 7.99 -2.39 -0.02 1.15 16 42 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.11 1.94 7.67 -2.39 -0.02 1.92 16 44 H 0.12 0.38 6.46 -2.39 -0.02 0.37 16 45 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.10 0.92 8.11 -2.39 -0.02 0.90 16 Total: -1.00 -81.03 385.94 0.27 -80.77 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.93 Total: 12.10 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 7.30 Total: 8.68 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -8.73 Total: -99.24 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -0.09 Total: -39.88 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.92 kcal Total: -81.03 0.27 -80.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112628914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.469 kcal (2) G-P(sol) polarization free energy of solvation -81.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds