Wall clock time and date at job start Sat Apr 11 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.45748 * 117.94472 * 2 1 4 4 C 1.52927 * 110.32375 * 160.82404 * 3 2 1 5 5 C 1.53334 * 108.67244 * 50.85324 * 4 3 2 6 6 C 1.53071 * 108.42864 * 292.46911 * 5 4 3 7 7 H 1.08996 * 109.40165 * 288.77605 * 6 5 4 8 8 N 1.46898 * 109.40406 * 168.94292 * 6 5 4 9 9 C 1.46902 * 110.99773 * 68.80001 * 8 6 5 10 10 C 1.53236 * 109.34079 * 172.74724 * 9 8 6 11 11 N 1.47080 * 108.52136 * 53.83231 * 10 9 8 12 12 C 1.34773 * 120.88527 * 128.79881 * 11 10 9 13 13 O 1.21277 * 120.00034 * 180.02562 * 12 11 10 14 14 C 1.50707 * 119.99827 * 0.02562 * 12 11 10 15 15 S 1.80998 * 109.46871 * 180.02562 * 14 12 11 16 16 C 1.76203 * 99.99544 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00451 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99584 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00518 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99851 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47078 * 60.00380 * 20 18 16 22 22 H 1.48496 * 109.47316 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47359 * 300.00324 * 20 18 16 24 24 C 1.47080 * 118.23525 * 308.81387 * 11 10 9 25 25 C 1.46901 * 111.00270 * 304.50220 * 8 6 5 26 26 C 1.33091 * 117.74639 * 180.20996 * 2 1 3 27 27 O 1.21280 * 118.32848 * 2.22231 * 26 2 1 28 28 H 1.08997 * 109.47459 * 90.00431 * 1 2 3 29 29 H 1.09007 * 109.47019 * 210.00186 * 1 2 3 30 30 H 1.08997 * 109.47663 * 329.99941 * 1 2 3 31 31 H 1.09002 * 109.30329 * 40.61550 * 3 2 1 32 32 H 1.09000 * 109.30003 * 281.03022 * 3 2 1 33 33 H 1.09003 * 109.60419 * 170.61582 * 4 3 2 34 34 H 1.09006 * 109.59862 * 291.09509 * 4 3 2 35 35 H 1.09000 * 109.67697 * 52.20894 * 5 4 3 36 36 H 1.09000 * 109.67314 * 172.70518 * 5 4 3 37 37 H 1.09003 * 109.49374 * 292.70882 * 9 8 6 38 38 H 1.08999 * 109.49373 * 52.78183 * 9 8 6 39 39 H 1.09004 * 109.62820 * 294.12137 * 10 9 8 40 40 H 1.09001 * 109.63101 * 173.53584 * 10 9 8 41 41 H 1.08993 * 109.47250 * 300.00546 * 14 12 11 42 42 H 1.08997 * 109.46459 * 60.00851 * 14 12 11 43 43 H 0.96992 * 120.00157 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.62696 * 291.47779 * 24 11 10 45 45 H 1.09003 * 109.63186 * 170.89918 * 24 11 10 46 46 H 1.09000 * 109.48562 * 307.20992 * 25 8 6 47 47 H 1.08994 * 109.49203 * 67.26211 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5934 1.1220 0.4710 5 6 4.2471 -0.0052 -0.3372 6 6 3.5780 -1.3272 0.0474 7 1 3.8794 -1.6052 1.0573 8 7 3.9946 -2.3765 -0.8925 9 6 5.4155 -2.7057 -0.7179 10 6 5.7649 -3.9211 -1.5833 11 7 5.3571 -3.6412 -2.9684 12 6 6.2191 -3.8089 -3.9907 13 8 5.8660 -3.5728 -5.1266 14 6 7.6219 -4.2899 -3.7223 15 16 8.5270 -4.4126 -5.2849 16 6 10.0861 -4.9798 -4.6916 17 1 10.2349 -5.1428 -3.6345 18 6 11.1232 -5.2172 -5.5830 19 7 10.9422 -5.0182 -6.8715 20 14 12.7764 -5.8180 -4.9540 21 1 12.5984 -7.1170 -4.2567 22 1 13.7072 -5.9932 -6.0977 23 1 13.3380 -4.8209 -4.0076 24 6 3.9836 -3.1729 -3.2082 25 6 3.7043 -1.9870 -2.2789 26 6 2.0846 -1.1779 -0.0043 27 8 1.4084 -2.1837 -0.0494 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6270 1.9718 0.6697 32 1 2.1429 1.6980 -1.0097 33 1 4.1393 2.0517 0.3100 34 1 3.6057 0.8669 1.5308 35 1 4.1094 0.1795 -1.4025 36 1 5.3116 -0.0518 -0.1075 37 1 6.0260 -1.8553 -1.0217 38 1 5.6093 -2.9371 0.3295 39 1 5.2326 -4.7981 -1.2149 40 1 6.8396 -4.0996 -1.5471 41 1 8.1283 -3.5841 -3.0639 42 1 7.5851 -5.2694 -3.2455 43 1 11.6671 -5.1837 -7.4944 44 1 3.2800 -3.9780 -2.9960 45 1 3.8805 -2.8569 -4.2463 46 1 2.6570 -1.6973 -2.3635 47 1 4.3382 -1.1464 -2.5608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112630302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:07 Heat of formation + Delta-G solvation = -71.205773 kcal Electronic energy + Delta-G solvation = -28119.997678 eV Core-core repulsion = 24235.441571 eV Total energy + Delta-G solvation = -3884.556107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.02741 -40.97488 -39.01949 -37.46062 -36.19120 -34.57612 -33.68264 -32.68485 -30.97620 -29.89841 -28.06286 -27.72884 -27.35160 -24.84467 -24.63156 -23.34614 -22.27445 -20.38496 -19.59708 -19.28394 -18.38534 -17.62940 -17.52442 -17.13652 -16.92615 -16.86083 -16.72473 -16.20043 -15.86449 -15.78741 -15.39063 -15.20454 -14.83607 -14.57406 -14.46054 -14.36434 -14.34178 -13.57146 -13.45079 -13.33879 -13.17045 -13.16002 -13.05915 -12.85818 -12.72070 -12.64826 -12.51478 -12.30733 -12.10990 -12.03278 -11.81670 -11.72300 -11.11887 -10.92732 -10.67657 -10.26210 -9.89543 -9.73178 -9.28087 -8.67178 -8.33464 -6.12219 1.24396 1.44948 1.45150 1.52415 1.55093 1.57770 1.98299 2.05393 2.28225 2.76666 3.00592 3.24227 3.46440 3.58238 3.70015 3.77801 3.84741 3.92764 3.96847 4.08837 4.16983 4.22392 4.29689 4.35869 4.41354 4.43999 4.47374 4.48422 4.59317 4.63096 4.65324 4.73511 4.75588 4.82555 4.92491 4.94211 5.03057 5.04711 5.24327 5.41512 5.42603 5.44719 5.75513 5.88387 6.20557 6.27204 6.45499 7.07435 7.09455 7.18501 8.75534 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024994 B = 0.002227 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.016447 B =12569.177191 C =12910.453084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.608 5.608 3 C 0.106 3.894 4 C -0.126 4.126 5 C -0.158 4.158 6 C 0.080 3.920 7 H 0.127 0.873 8 N -0.527 5.527 9 C 0.047 3.953 10 C 0.105 3.895 11 N -0.608 5.608 12 C 0.534 3.466 13 O -0.567 6.567 14 C -0.121 4.121 15 S -0.154 6.154 16 C -0.544 4.544 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.260 1.260 24 C 0.120 3.880 25 C 0.057 3.943 26 C 0.512 3.488 27 O -0.577 6.577 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.922 15.450 22.789 32.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.341 5.341 3 C -0.016 4.016 4 C -0.164 4.164 5 C -0.197 4.197 6 C -0.032 4.032 7 H 0.145 0.855 8 N -0.252 5.252 9 C -0.081 4.081 10 C -0.017 4.017 11 N -0.343 5.343 12 C 0.322 3.678 13 O -0.446 6.446 14 C -0.272 4.272 15 S 0.073 5.927 16 C -0.692 4.692 17 H 0.103 0.897 18 C -0.192 4.192 19 N -0.549 5.549 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.206 1.206 23 H -0.184 1.184 24 C -0.003 4.003 25 C -0.072 4.072 26 C 0.300 3.700 27 O -0.456 6.456 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.995 14.854 21.036 31.416 hybrid contribution 1.482 -0.086 0.699 1.641 sum -16.513 14.769 21.734 31.035 Atomic orbital electron populations 1.21781 0.79052 1.03732 1.02174 1.47397 1.08093 1.06482 1.72087 1.21735 0.93696 0.83307 1.02849 1.21839 0.94123 0.99867 1.00551 1.22405 1.01722 0.94382 1.01233 1.21686 0.90566 0.91561 0.99339 0.85507 1.61826 1.19516 1.40353 1.03475 1.22563 0.86541 0.97039 1.01928 1.22135 1.02067 0.98785 0.78718 1.48147 1.12099 1.66543 1.07479 1.20197 0.86607 0.76582 0.84426 1.90672 1.78542 1.51992 1.23378 1.23348 0.94920 1.05294 1.03666 1.85635 1.10545 1.87741 1.08734 1.23157 0.97552 1.51889 0.96598 0.89714 1.26149 1.03493 0.94949 0.94646 1.70182 1.34537 1.46994 1.03148 0.84996 0.75901 0.79160 0.77895 1.18664 1.20551 1.18444 1.21605 0.82084 0.96920 0.99649 1.22307 1.00816 0.95887 0.88144 1.20211 0.90996 0.82853 0.75977 1.90707 1.66618 1.37487 1.50770 0.92923 0.92267 0.88104 0.87872 0.91177 0.87523 0.89921 0.91699 0.89228 0.93294 0.86344 0.89606 0.87758 0.87034 0.87401 0.92026 0.90866 0.90432 0.90662 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.21 127.77 1.30 2.21 16 2 N -0.61 -8.28 3.20 -852.00 -2.73 -11.01 16 3 C 0.11 0.66 6.40 86.50 0.55 1.22 16 4 C -0.13 -0.64 6.02 30.68 0.18 -0.45 16 5 C -0.16 -1.61 4.63 30.73 0.14 -1.47 16 6 C 0.08 1.20 2.41 44.03 0.11 1.31 16 7 H 0.13 1.57 7.99 -2.39 -0.02 1.55 16 8 N -0.53 -10.22 4.34 -875.26 -3.79 -14.01 16 9 C 0.05 0.76 5.24 86.38 0.45 1.21 16 10 C 0.11 2.18 6.50 86.35 0.56 2.74 16 11 N -0.61 -17.78 3.01 -817.94 -2.46 -20.24 16 12 C 0.53 20.86 7.73 87.66 0.68 21.54 16 13 O -0.57 -27.45 15.31 -3.02 -0.05 -27.50 16 14 C -0.12 -4.87 4.52 71.24 0.32 -4.55 16 15 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 16 C -0.54 -30.90 9.50 67.95 0.65 -30.25 16 17 H 0.08 4.42 7.80 -2.92 -0.02 4.39 16 18 C 0.01 0.70 5.49 84.86 0.47 1.16 16 19 N -0.91 -56.17 13.22 21.65 0.29 -55.89 16 20 Si 1.00 43.27 29.55 68.60 2.03 45.29 16 21 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 C 0.12 3.33 6.60 86.35 0.57 3.90 16 25 C 0.06 1.27 4.73 86.38 0.41 1.68 16 26 C 0.51 10.11 5.79 87.75 0.51 10.62 16 27 O -0.58 -16.76 15.90 -3.03 -0.05 -16.80 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.98 7.20 -2.38 -0.02 0.96 16 30 H 0.10 0.53 7.86 -2.39 -0.02 0.51 16 31 H 0.10 0.17 7.92 -2.39 -0.02 0.16 16 32 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.08 0.33 8.12 -2.38 -0.02 0.32 16 35 H 0.06 0.86 5.92 -2.39 -0.01 0.85 16 36 H 0.09 0.78 7.37 -2.39 -0.02 0.77 16 37 H 0.05 0.78 7.18 -2.39 -0.02 0.76 16 38 H 0.12 1.27 8.00 -2.39 -0.02 1.25 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 1.99 6.02 -2.39 -0.01 1.97 16 41 H 0.11 3.95 7.66 -2.40 -0.02 3.93 16 42 H 0.11 3.94 8.00 -2.40 -0.02 3.92 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 45 H 0.08 2.44 7.06 -2.39 -0.02 2.43 16 46 H 0.08 1.77 7.02 -2.39 -0.02 1.75 16 47 H 0.05 1.02 6.43 -2.39 -0.02 1.01 16 Total: -1.00 -83.95 378.77 -0.06 -84.01 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.97 Total: 15.06 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.90 Total: 10.87 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -8.70 Total: -101.16 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.09 Total: -44.30 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -83.95 -0.06 -84.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.804 kcal (2) G-P(sol) polarization free energy of solvation -83.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds