Wall clock time and date at job start Sat Apr 11 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 119.99597 * 2 1 4 4 O 1.21273 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99745 * 180.02562 * 3 2 1 6 6 N 1.46902 * 109.46876 * 180.02562 * 5 3 2 7 7 C 1.46906 * 110.99927 * 179.97438 * 6 5 3 8 8 C 1.53951 * 113.57868 * 252.72119 * 7 6 5 9 9 C 1.52905 * 86.78093 * 220.66449 * 8 7 6 10 10 C 1.52906 * 88.04669 * 24.89531 * 9 8 7 11 11 C 1.52911 * 121.13991 * 150.61603 * 9 8 7 12 12 C 1.53956 * 86.78160 * 100.81867 * 11 9 8 13 13 N 1.46494 * 113.57668 * 139.33868 * 12 11 9 14 14 C 1.34775 * 120.00386 * 107.27957 * 13 12 11 15 15 O 1.21282 * 119.99594 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00528 * 179.97438 * 14 13 12 17 17 S 1.80994 * 109.47197 * 180.02562 * 16 14 13 18 18 C 1.76204 * 99.99874 * 180.02562 * 17 16 14 19 19 H 1.07993 * 119.99998 * 359.97438 * 18 17 16 20 20 C 1.38808 * 119.99739 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00129 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99531 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47704 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47215 * 119.99898 * 22 20 18 25 25 H 1.48501 * 109.47149 * 239.99635 * 22 20 18 26 26 C 1.52910 * 121.13580 * 259.17717 * 9 8 7 27 27 H 1.08998 * 109.47835 * 60.00091 * 1 2 3 28 28 H 1.09007 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47050 * 299.99801 * 1 2 3 30 30 H 0.96998 * 120.00271 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47516 * 59.99785 * 5 3 2 32 32 H 1.09008 * 109.46655 * 299.99505 * 5 3 2 33 33 H 1.00895 * 111.00373 * 56.04497 * 6 5 3 34 34 H 1.08997 * 112.82396 * 23.90672 * 7 6 5 35 35 H 1.09001 * 113.66142 * 335.13373 * 8 7 6 36 36 H 1.08993 * 113.66591 * 106.19219 * 8 7 6 37 37 H 1.08997 * 113.66446 * 220.63592 * 10 9 8 38 38 H 1.08998 * 113.66137 * 89.57117 * 10 9 8 39 39 H 1.09000 * 113.66285 * 215.28955 * 11 9 8 40 40 H 1.08996 * 113.66152 * 346.34694 * 11 9 8 41 41 H 1.09000 * 113.57934 * 270.13022 * 12 11 9 42 42 H 0.97002 * 120.00141 * 287.27892 * 13 12 11 43 43 H 1.09002 * 109.46789 * 300.00112 * 16 14 13 44 44 H 1.09000 * 109.46846 * 60.00027 * 16 14 13 45 45 H 0.96996 * 120.00108 * 179.97438 * 21 20 18 46 46 H 1.09007 * 113.66098 * 13.65248 * 26 9 8 47 47 H 1.09003 * 113.66635 * 144.60776 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1673 -0.0006 6 7 4.1354 2.5524 0.0002 7 6 5.6039 2.5917 0.0002 8 6 6.2082 3.0264 1.3478 9 6 7.2138 3.8429 0.5353 10 6 6.1854 3.8867 -0.5954 11 6 7.8272 5.1263 1.0962 12 6 9.0766 4.2859 1.4172 13 7 10.3366 4.9786 1.1368 14 6 11.1003 5.4262 2.1532 15 8 10.7441 5.2559 3.2999 16 6 12.3968 6.1382 1.8648 17 16 13.1850 6.6114 3.4238 18 6 14.6341 7.4013 2.8066 19 1 14.8004 7.4686 1.7417 20 6 15.5619 7.9370 3.6892 21 7 15.3589 7.8553 4.9872 22 14 17.0984 8.7737 3.0349 23 1 17.0903 8.7331 1.5505 24 1 17.1254 10.1865 3.4917 25 1 18.3015 8.0663 3.5424 26 6 8.6345 3.3323 0.2925 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 4.0088 0.6537 -0.8907 32 1 4.0094 0.6533 0.8893 33 1 3.7602 3.0682 0.7819 34 1 6.0511 1.6851 -0.4074 35 1 5.5365 3.6359 1.9522 36 1 6.6604 2.2085 1.9087 37 1 6.6192 3.7559 -1.5867 38 1 5.5072 4.7380 -0.5371 39 1 7.9988 5.8949 0.3426 40 1 7.3157 5.5053 1.9810 41 1 9.0539 3.8319 2.4079 42 1 10.6214 5.1151 0.2197 43 1 13.0599 5.4748 1.3095 44 1 12.1969 7.0312 1.2725 45 1 16.0074 8.2294 5.6040 46 1 8.7679 2.2780 0.5352 47 1 9.0324 3.5952 -0.6877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120665443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:15 Heat of formation + Delta-G solvation = -29.401303 kcal Electronic energy + Delta-G solvation = -25798.869844 eV Core-core repulsion = 21916.126515 eV Total energy + Delta-G solvation = -3882.743329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03422 -40.03101 -38.87967 -36.60946 -35.06744 -33.98807 -32.42396 -32.10113 -29.09760 -28.38822 -26.11200 -26.04732 -25.57384 -25.43287 -22.97020 -21.17924 -20.89050 -20.32869 -18.37591 -17.77143 -17.71489 -16.75788 -16.50894 -16.31430 -16.08381 -15.64016 -15.34677 -15.11055 -14.80046 -14.77357 -14.24362 -14.21130 -13.59641 -13.51812 -13.15733 -13.11154 -13.00442 -12.80365 -12.64524 -12.53380 -12.48403 -12.31090 -12.03927 -11.64963 -11.31607 -11.06613 -11.01206 -10.85972 -10.71708 -10.43977 -10.33188 -10.14137 -9.78616 -9.66430 -9.33853 -9.06995 -8.81461 -8.78347 -8.22013 -6.48979 -6.21195 -3.91443 2.18085 2.60904 3.06750 3.09641 3.21959 3.29075 3.34211 3.72696 3.76684 4.10854 4.17017 4.21083 4.26949 4.32163 4.46150 4.59320 4.70874 4.74860 4.80856 4.81142 4.94569 5.00096 5.12521 5.14191 5.27776 5.30876 5.42507 5.46111 5.49613 5.55498 5.64997 5.67726 5.76447 5.78203 5.84131 5.90484 5.97216 6.06096 6.15501 6.21855 6.54420 6.72239 6.86230 6.99235 7.60588 7.74841 7.75863 8.36143 8.64686 9.24349 10.86356 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.053155 B = 0.001382 C = 0.001369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.631779 B =20253.002595 C =20443.388341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.740 5.740 3 C 0.509 3.491 4 O -0.523 6.523 5 C 0.040 3.960 6 N -0.664 5.664 7 C 0.068 3.932 8 C -0.144 4.144 9 C -0.103 4.103 10 C -0.108 4.108 11 C -0.136 4.136 12 C 0.129 3.871 13 N -0.729 5.729 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.121 4.121 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.402 0.598 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.354 0.646 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.073 0.927 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.587 -18.313 -14.215 34.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.393 5.393 3 C 0.294 3.706 4 O -0.398 6.398 5 C -0.093 4.093 6 N -0.295 5.295 7 C -0.042 4.042 8 C -0.183 4.183 9 C -0.104 4.104 10 C -0.146 4.146 11 C -0.175 4.175 12 C 0.023 3.977 13 N -0.382 5.382 14 C 0.319 3.681 15 O -0.393 6.393 16 C -0.305 4.305 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.159 4.159 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.235 0.765 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.174 0.826 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.130 0.870 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -26.637 -17.710 -12.785 34.447 hybrid contribution 1.924 0.061 -1.268 2.305 sum -24.713 -17.648 -14.053 33.462 Atomic orbital electron populations 1.21530 0.79459 1.02233 1.02435 1.45811 1.07904 1.08762 1.76856 1.20724 0.90203 0.83699 0.75937 1.90734 1.70112 1.31168 1.47775 1.21851 0.91587 0.92881 1.02942 1.60173 1.07305 1.10797 1.51259 1.23099 0.85863 0.98985 0.96226 1.23449 0.98257 0.99704 0.96868 1.22050 0.93056 0.97449 0.97887 1.22872 0.96542 0.97727 0.97455 1.23297 0.96639 0.96345 1.01246 1.22389 0.82458 0.93173 0.99643 1.46000 1.22511 1.60256 1.09384 1.20344 0.84859 0.77908 0.85028 1.90691 1.72289 1.55490 1.20826 1.23543 0.96668 1.02444 1.07838 1.85395 1.22822 1.73697 1.01554 1.22915 1.07132 1.42899 0.95366 0.90888 1.24990 0.98316 0.95675 0.94586 1.70026 1.35691 1.43249 1.01347 0.86120 0.81473 0.78971 0.78952 1.19613 1.20562 1.20578 1.23084 0.93820 0.99688 0.99287 0.92166 0.90636 0.92222 0.76487 0.87996 0.92087 0.82575 0.88435 0.89345 0.91096 0.91154 0.89242 0.89492 0.90930 0.86965 0.76799 0.89258 0.89240 0.92246 0.90806 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 10.70 59.84 0.64 0.99 16 2 N -0.74 -3.23 5.71 -67.08 -0.38 -3.61 16 3 C 0.51 3.81 7.87 -10.98 -0.09 3.72 16 4 O -0.52 -6.33 16.20 5.56 0.09 -6.24 16 5 C 0.04 0.21 6.01 -4.98 -0.03 0.18 16 6 N -0.66 -4.90 6.24 -106.95 -0.67 -5.57 16 7 C 0.07 0.44 4.18 -66.73 -0.28 0.16 16 8 C -0.14 -1.02 7.46 -26.28 -0.20 -1.21 16 9 C -0.10 -0.81 1.11 -154.71 -0.17 -0.98 16 10 C -0.11 -0.79 7.64 -26.28 -0.20 -0.99 16 11 C -0.14 -1.38 7.64 -26.28 -0.20 -1.58 16 12 C 0.13 1.48 4.24 -66.95 -0.28 1.20 16 13 N -0.73 -9.63 5.35 -52.85 -0.28 -9.91 16 14 C 0.53 9.94 7.85 -10.99 -0.09 9.85 16 15 O -0.52 -11.82 15.46 5.56 0.09 -11.74 16 16 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 22 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C -0.12 -0.97 7.59 -26.28 -0.20 -1.17 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.40 0.47 8.83 -40.82 -0.36 0.11 16 31 H 0.10 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.06 0.22 8.14 -51.92 -0.42 -0.20 16 33 H 0.35 2.88 7.89 -39.29 -0.31 2.57 16 34 H 0.10 0.54 7.87 -51.93 -0.41 0.13 16 35 H 0.09 0.65 7.82 -51.93 -0.41 0.25 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.11 1.54 7.47 -51.93 -0.39 1.15 16 42 H 0.40 4.08 8.73 -40.82 -0.36 3.72 16 43 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -37.59 405.75 -9.91 -47.50 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.69 Total: 2.15 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -0.67 Total: -5.72 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.60 Total: -44.62 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.18 Total: -17.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.59 -9.91 -47.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120665443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.096 kcal (2) G-P(sol) polarization free energy of solvation -37.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds