Wall clock time and date at job start Sat Apr 11 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 119.99597 * 2 1 4 4 O 1.21273 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99745 * 180.02562 * 3 2 1 6 6 N 1.46902 * 109.46876 * 180.02562 * 5 3 2 7 7 C 1.46906 * 110.99927 * 179.97438 * 6 5 3 8 8 C 1.53951 * 113.57868 * 252.72119 * 7 6 5 9 9 C 1.52905 * 86.78093 * 220.66449 * 8 7 6 10 10 C 1.52906 * 88.04669 * 24.89531 * 9 8 7 11 11 C 1.52911 * 121.13991 * 150.61603 * 9 8 7 12 12 C 1.53956 * 86.78160 * 100.81867 * 11 9 8 13 13 N 1.46494 * 113.57668 * 139.33868 * 12 11 9 14 14 C 1.34775 * 120.00386 * 107.27957 * 13 12 11 15 15 O 1.21282 * 119.99594 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00528 * 179.97438 * 14 13 12 17 17 S 1.80994 * 109.47197 * 180.02562 * 16 14 13 18 18 C 1.76204 * 99.99874 * 180.02562 * 17 16 14 19 19 H 1.07993 * 119.99998 * 359.97438 * 18 17 16 20 20 C 1.38808 * 119.99739 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00129 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99531 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47704 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47215 * 119.99898 * 22 20 18 25 25 H 1.48501 * 109.47149 * 239.99635 * 22 20 18 26 26 C 1.52910 * 121.13580 * 259.17717 * 9 8 7 27 27 H 1.08998 * 109.47835 * 60.00091 * 1 2 3 28 28 H 1.09007 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47050 * 299.99801 * 1 2 3 30 30 H 0.96998 * 120.00271 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47516 * 59.99785 * 5 3 2 32 32 H 1.09008 * 109.46655 * 299.99505 * 5 3 2 33 33 H 1.00895 * 111.00373 * 56.04497 * 6 5 3 34 34 H 1.08997 * 112.82396 * 23.90672 * 7 6 5 35 35 H 1.09001 * 113.66142 * 335.13373 * 8 7 6 36 36 H 1.08993 * 113.66591 * 106.19219 * 8 7 6 37 37 H 1.08997 * 113.66446 * 220.63592 * 10 9 8 38 38 H 1.08998 * 113.66137 * 89.57117 * 10 9 8 39 39 H 1.09000 * 113.66285 * 215.28955 * 11 9 8 40 40 H 1.08996 * 113.66152 * 346.34694 * 11 9 8 41 41 H 1.09000 * 113.57934 * 270.13022 * 12 11 9 42 42 H 0.97002 * 120.00141 * 287.27892 * 13 12 11 43 43 H 1.09002 * 109.46789 * 300.00112 * 16 14 13 44 44 H 1.09000 * 109.46846 * 60.00027 * 16 14 13 45 45 H 0.96996 * 120.00108 * 179.97438 * 21 20 18 46 46 H 1.09007 * 113.66098 * 13.65248 * 26 9 8 47 47 H 1.09003 * 113.66635 * 144.60776 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1673 -0.0006 6 7 4.1354 2.5524 0.0002 7 6 5.6039 2.5917 0.0002 8 6 6.2082 3.0264 1.3478 9 6 7.2138 3.8429 0.5353 10 6 6.1854 3.8867 -0.5954 11 6 7.8272 5.1263 1.0962 12 6 9.0766 4.2859 1.4172 13 7 10.3366 4.9786 1.1368 14 6 11.1003 5.4262 2.1532 15 8 10.7441 5.2559 3.2999 16 6 12.3968 6.1382 1.8648 17 16 13.1850 6.6114 3.4238 18 6 14.6341 7.4013 2.8066 19 1 14.8004 7.4686 1.7417 20 6 15.5619 7.9370 3.6892 21 7 15.3589 7.8553 4.9872 22 14 17.0984 8.7737 3.0349 23 1 17.0903 8.7331 1.5505 24 1 17.1254 10.1865 3.4917 25 1 18.3015 8.0663 3.5424 26 6 8.6345 3.3323 0.2925 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 4.0088 0.6537 -0.8907 32 1 4.0094 0.6533 0.8893 33 1 3.7602 3.0682 0.7819 34 1 6.0511 1.6851 -0.4074 35 1 5.5365 3.6359 1.9522 36 1 6.6604 2.2085 1.9087 37 1 6.6192 3.7559 -1.5867 38 1 5.5072 4.7380 -0.5371 39 1 7.9988 5.8949 0.3426 40 1 7.3157 5.5053 1.9810 41 1 9.0539 3.8319 2.4079 42 1 10.6214 5.1151 0.2197 43 1 13.0599 5.4748 1.3095 44 1 12.1969 7.0312 1.2725 45 1 16.0074 8.2294 5.6040 46 1 8.7679 2.2780 0.5352 47 1 9.0324 3.5952 -0.6877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120665443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:14 Heat of formation + Delta-G solvation = -59.415312 kcal Electronic energy + Delta-G solvation = -25800.171349 eV Core-core repulsion = 21916.126515 eV Total energy + Delta-G solvation = -3884.044834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78430 -40.65038 -40.15902 -37.40916 -35.58509 -34.90621 -34.58233 -33.08177 -30.52174 -28.93876 -27.67307 -26.79316 -26.68386 -25.96598 -23.82127 -21.93425 -21.59659 -21.40571 -19.87222 -18.95248 -18.21723 -17.84766 -17.40773 -17.24115 -16.88101 -16.72361 -16.45429 -16.08905 -16.06697 -16.01805 -15.53018 -14.82246 -14.70876 -14.59875 -14.17449 -14.05049 -13.91043 -13.66263 -13.51197 -13.27408 -13.15920 -13.11253 -13.07854 -12.91170 -12.89682 -12.60829 -12.38046 -12.08268 -11.73725 -11.51099 -11.15757 -11.11860 -10.98218 -10.93054 -10.70606 -10.26762 -10.12802 -9.97622 -9.28856 -8.66628 -8.34754 -6.12782 1.28004 1.41567 1.47989 1.59112 1.61818 1.64838 2.22134 2.26833 2.34969 2.99640 3.24046 3.32809 3.48310 3.49553 3.63532 3.81676 3.87587 3.97503 4.00131 4.04434 4.31780 4.34546 4.45649 4.46219 4.47592 4.51609 4.52011 4.62379 4.76462 4.80145 4.88873 4.91918 4.94621 4.99568 5.04734 5.12370 5.26587 5.33680 5.42252 5.44799 5.45912 5.64164 6.08725 6.20205 6.32146 6.56263 6.61043 7.06762 7.28654 7.30054 8.74861 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.053155 B = 0.001382 C = 0.001369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.631779 B =20253.002595 C =20443.388341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.726 5.726 3 C 0.502 3.498 4 O -0.580 6.580 5 C 0.043 3.957 6 N -0.680 5.680 7 C 0.080 3.920 8 C -0.145 4.145 9 C -0.094 4.094 10 C -0.106 4.106 11 C -0.138 4.138 12 C 0.113 3.887 13 N -0.702 5.702 14 C 0.533 3.467 15 O -0.569 6.569 16 C -0.130 4.130 17 S -0.154 6.154 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.101 4.101 27 H 0.046 0.954 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.420 0.580 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.346 0.654 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.417 0.583 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.086 0.914 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.190 -19.985 -17.250 36.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.379 5.379 3 C 0.289 3.711 4 O -0.459 6.459 5 C -0.088 4.088 6 N -0.311 5.311 7 C -0.030 4.030 8 C -0.184 4.184 9 C -0.096 4.096 10 C -0.144 4.144 11 C -0.177 4.177 12 C 0.008 3.992 13 N -0.354 5.354 14 C 0.319 3.681 15 O -0.448 6.448 16 C -0.281 4.281 17 S 0.073 5.927 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.138 4.138 27 H 0.064 0.936 28 H 0.128 0.872 29 H 0.064 0.936 30 H 0.257 0.743 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.165 0.835 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.254 0.746 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -26.260 -19.455 -15.888 36.339 hybrid contribution 1.648 0.505 -0.367 1.763 sum -24.612 -18.949 -16.254 35.057 Atomic orbital electron populations 1.21616 0.79285 1.04049 1.01090 1.45754 1.08184 1.08867 1.75129 1.21228 0.91277 0.83580 0.75026 1.90710 1.71287 1.33198 1.50665 1.21940 0.89858 0.92128 1.04915 1.60164 1.07749 1.12141 1.51092 1.23065 0.85450 0.99235 0.95211 1.23463 0.97992 0.99618 0.97374 1.21978 0.93364 0.95894 0.98329 1.22843 0.96038 0.97906 0.97660 1.23309 0.96026 0.97513 1.00873 1.22608 0.81718 0.94672 1.00162 1.45777 1.22116 1.58453 1.09103 1.20121 0.84802 0.77915 0.85259 1.90681 1.73326 1.57748 1.22998 1.23389 0.97283 1.03833 1.03630 1.85589 1.24441 1.74487 1.08174 1.23244 1.07267 1.42938 0.95895 0.89894 1.26126 1.02057 0.96199 0.94710 1.70190 1.37203 1.44461 1.03011 0.84903 0.76486 0.77585 0.78954 1.17966 1.19978 1.19893 1.23029 0.92900 0.99435 0.98485 0.93551 0.87200 0.93615 0.74346 0.85828 0.89867 0.83492 0.86431 0.90283 0.90661 0.90044 0.90567 0.88939 0.92752 0.89551 0.74588 0.87115 0.87313 0.92000 0.89498 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 10.70 127.77 1.37 1.97 16 2 N -0.73 -5.18 5.71 -484.52 -2.77 -7.95 16 3 C 0.50 7.07 7.87 87.66 0.69 7.76 16 4 O -0.58 -14.37 16.20 -3.01 -0.05 -14.42 16 5 C 0.04 0.36 6.01 85.56 0.51 0.87 16 6 N -0.68 -9.11 6.24 -492.27 -3.07 -12.18 16 7 C 0.08 0.84 4.18 45.55 0.19 1.03 16 8 C -0.15 -1.86 7.46 30.88 0.23 -1.63 16 9 C -0.09 -1.30 1.11 -52.32 -0.06 -1.36 16 10 C -0.11 -1.33 7.64 30.88 0.24 -1.09 16 11 C -0.14 -2.70 7.64 30.89 0.24 -2.47 16 12 C 0.11 2.48 4.24 45.63 0.19 2.68 16 13 N -0.70 -17.43 5.35 -439.52 -2.35 -19.78 16 14 C 0.53 19.79 7.85 87.66 0.69 20.48 16 15 O -0.57 -26.80 15.46 -3.03 -0.05 -26.84 16 16 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 17 S -0.15 -8.63 20.57 -56.49 -1.16 -9.80 16 18 C -0.55 -31.31 9.50 67.96 0.65 -30.66 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.78 5.49 84.86 0.47 1.25 16 21 N -0.91 -56.35 13.22 21.65 0.29 -56.06 16 22 Si 1.00 43.70 29.55 68.60 2.03 45.72 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 C -0.10 -1.31 7.59 30.88 0.23 -1.08 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.42 -0.14 8.83 -92.71 -0.82 -0.96 16 31 H 0.12 0.50 8.13 -2.39 -0.02 0.48 16 32 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.35 5.58 7.89 -89.70 -0.71 4.87 16 34 H 0.12 0.80 7.87 -2.39 -0.02 0.78 16 35 H 0.08 1.17 7.82 -2.39 -0.02 1.15 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 2.41 7.47 -2.39 -0.02 2.39 16 42 H 0.42 7.27 8.73 -92.71 -0.81 6.46 16 43 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 44 H 0.11 3.89 8.14 -2.39 -0.02 3.88 16 45 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.11 1.05 8.12 -2.39 -0.02 1.03 16 Total: -1.00 -86.37 405.75 -2.40 -88.77 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -1.34 Total: 19.52 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 6.07 Total: -6.98 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -7.91 Total: -95.98 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -0.10 Total: -41.26 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.80 kcal Total: -86.37 -2.40 -88.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120665443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.355 kcal (2) G-P(sol) polarization free energy of solvation -86.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds