Wall clock time and date at job start Sat Apr 11 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99939 * 2 1 4 4 C 1.52996 * 109.47294 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47199 * 183.09200 * 4 3 2 6 6 N 1.46508 * 109.44487 * 305.13210 * 5 4 3 7 7 C 1.34778 * 119.99610 * 297.71441 * 6 5 4 8 8 O 1.21278 * 120.00403 * 5.11444 * 7 6 5 9 9 C 1.50706 * 119.99466 * 185.11073 * 7 6 5 10 10 S 1.81397 * 109.46754 * 180.02562 * 9 7 6 11 11 C 1.81398 * 102.99841 * 180.02562 * 10 9 7 12 12 C 1.47198 * 109.47330 * 180.02562 * 11 10 9 13 13 N 9.65215 * 104.26299 * 292.82600 * 2 1 3 14 14 C 1.53042 * 109.46017 * 185.16854 * 5 4 3 15 15 C 1.53191 * 109.31235 * 178.61240 * 14 5 4 16 16 N 1.46931 * 108.77621 * 54.63124 * 15 14 5 17 17 C 1.36937 * 120.63025 * 126.37096 * 16 15 14 18 18 H 1.07997 * 120.00034 * 210.82080 * 17 16 15 19 19 C 1.38807 * 120.00105 * 31.09095 * 17 16 15 20 20 N 1.31621 * 119.99805 * 11.28288 * 19 17 16 21 21 Si 1.86802 * 120.00232 * 191.28190 * 19 17 16 22 22 H 1.48501 * 109.47088 * 60.00387 * 21 19 17 23 23 H 1.48506 * 109.47171 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46815 * 300.00231 * 21 19 17 25 25 C 1.46921 * 118.73643 * 306.64326 * 16 15 14 26 26 C 1.52764 * 109.00896 * 53.31300 * 25 16 15 27 27 H 1.09006 * 109.47064 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47433 * 300.00204 * 1 2 3 29 29 H 1.08993 * 109.47319 * 60.00410 * 1 2 3 30 30 H 1.08996 * 109.47046 * 59.99451 * 3 2 1 31 31 H 1.09004 * 109.46820 * 300.00170 * 3 2 1 32 32 H 1.08994 * 109.47449 * 63.08491 * 4 3 2 33 33 H 1.09002 * 109.46726 * 303.08534 * 4 3 2 34 34 H 0.96995 * 119.99962 * 117.71579 * 6 5 4 35 35 H 1.09000 * 109.47053 * 300.00363 * 9 7 6 36 36 H 1.08999 * 109.46888 * 60.00666 * 9 7 6 37 37 H 1.09006 * 109.47310 * 299.99983 * 11 10 9 38 38 H 1.08994 * 109.47737 * 59.99926 * 11 10 9 39 39 H 1.08994 * 109.49984 * 58.66084 * 14 5 4 40 40 H 1.08997 * 109.49617 * 298.56036 * 14 5 4 41 41 H 1.08998 * 109.58759 * 294.84650 * 15 14 5 42 42 H 1.08993 * 109.58758 * 174.41952 * 15 14 5 43 43 H 0.97003 * 119.99811 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.58646 * 173.14013 * 25 16 15 45 45 H 1.08993 * 109.58959 * 293.56887 * 25 16 15 46 46 H 1.09000 * 109.55935 * 185.54980 * 26 25 16 47 47 H 1.08996 * 109.36067 * 65.49662 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1575 2.5804 0.0772 6 7 3.6339 3.4092 -1.0116 7 6 3.8648 3.0624 -2.2933 8 8 4.4251 2.0173 -2.5473 9 6 3.4267 3.9736 -3.4110 10 16 3.8756 3.2338 -5.0052 11 6 3.2777 4.4560 -6.2050 12 6 3.5735 3.9896 -7.5694 13 7 3.8070 3.6290 -8.6220 14 6 5.6783 2.4687 -0.0532 15 6 6.2948 3.8704 -0.0097 16 7 5.8420 4.5484 1.2127 17 6 6.7469 5.0918 2.0851 18 1 6.5219 5.1326 3.1406 19 6 7.9510 5.5952 1.6122 20 7 8.1343 5.7560 0.3188 21 14 9.3110 6.0443 2.8113 22 1 9.7052 4.8405 3.5863 23 1 10.4850 6.5559 2.0594 24 1 8.8238 7.0943 3.7416 25 6 4.4003 4.6271 1.4841 26 6 3.8047 3.2217 1.4211 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8605 0.6925 -0.9171 33 1 3.8536 0.5967 0.8602 34 1 3.1210 4.2074 -0.8099 35 1 2.3463 4.1106 -3.3657 36 1 3.9202 4.9398 -3.3066 37 1 2.2011 4.5817 -6.0898 38 1 3.7755 5.4099 -6.0308 39 1 5.9281 1.9907 -1.0003 40 1 6.0712 1.8727 0.7705 41 1 5.9735 4.4382 -0.8828 42 1 7.3818 3.7914 -0.0024 43 1 8.9756 6.1081 -0.0117 44 1 4.2377 5.0471 2.4768 45 1 3.9213 5.2578 0.7353 46 1 2.7211 3.2797 1.5233 47 1 4.2153 2.6187 2.2310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150970633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:21 Heat of formation + Delta-G solvation = -47.438522 kcal Electronic energy + Delta-G solvation = -28490.178504 eV Core-core repulsion = 24606.653022 eV Total energy + Delta-G solvation = -3883.525482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58935 -39.01376 -38.53499 -37.72482 -36.17660 -33.74556 -33.12677 -31.77263 -31.26792 -30.55067 -29.98989 -27.57445 -26.34657 -24.56903 -23.71786 -22.43208 -21.75347 -20.12937 -19.43712 -18.71400 -17.91671 -17.45262 -17.11622 -16.95097 -16.78578 -16.40239 -16.31618 -15.80629 -15.72822 -15.49385 -15.21422 -14.99870 -14.89021 -14.83160 -14.32641 -14.13595 -13.87706 -13.83558 -13.49621 -13.24542 -13.00405 -12.96569 -12.90400 -12.70544 -12.65213 -12.55536 -12.26734 -12.15194 -12.03002 -11.89769 -11.73207 -11.30885 -11.23192 -10.93309 -10.60905 -10.49166 -10.40061 -9.91277 -8.68959 -8.55277 -7.81631 -5.30483 0.07707 1.36811 1.48329 1.51053 1.56414 1.68166 1.72893 2.08986 2.36009 2.54015 2.84472 2.87710 3.34698 3.67814 3.76699 3.94122 4.05063 4.17452 4.24443 4.24984 4.25982 4.40953 4.42938 4.45662 4.50351 4.58838 4.59521 4.63844 4.75544 4.81564 4.88449 4.95231 5.05838 5.12089 5.17342 5.23074 5.33962 5.42274 5.57309 5.68298 5.71997 5.83799 6.32677 6.43003 6.46008 6.69466 7.21798 7.38528 7.93465 8.44036 9.22935 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007933 B = 0.003859 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3528.694774 B = 7254.529347 C =10219.827625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.075 3.925 4 C -0.121 4.121 5 C 0.208 3.792 6 N -0.700 5.700 7 C 0.524 3.476 8 O -0.557 6.557 9 C -0.112 4.112 10 S -0.217 6.217 11 C -0.005 4.005 12 C 0.246 3.754 13 N -0.474 5.474 14 C -0.140 4.140 15 C 0.197 3.803 16 N -0.607 5.607 17 C -0.260 4.260 18 H 0.066 0.934 19 C -0.047 4.047 20 N -0.932 5.932 21 Si 0.960 3.040 22 H -0.283 1.283 23 H -0.298 1.298 24 H -0.273 1.273 25 C 0.143 3.857 26 C -0.127 4.127 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.413 0.587 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.170 0.830 38 H 0.159 0.841 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.004 0.996 42 H 0.038 0.962 43 H 0.247 0.753 44 H 0.057 0.943 45 H 0.033 0.967 46 H 0.100 0.900 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.162 -1.100 -3.299 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.001 4.001 4 C -0.159 4.159 5 C 0.121 3.879 6 N -0.354 5.354 7 C 0.310 3.690 8 O -0.436 6.436 9 C -0.263 4.263 10 S 0.007 5.993 11 C -0.155 4.155 12 C -0.071 4.071 13 N -0.153 5.153 14 C -0.180 4.180 15 C 0.071 3.929 16 N -0.331 5.331 17 C -0.390 4.390 18 H 0.084 0.916 19 C -0.243 4.243 20 N -0.578 5.578 21 Si 0.789 3.211 22 H -0.209 1.209 23 H -0.225 1.225 24 H -0.199 1.199 25 C 0.017 3.983 26 C -0.166 4.166 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.251 0.749 35 H 0.176 0.824 36 H 0.153 0.847 37 H 0.188 0.812 38 H 0.177 0.823 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.022 0.978 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.119 0.881 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.659 -3.394 -5.296 19.691 hybrid contribution 0.507 1.916 1.091 2.263 sum -18.153 -1.477 -4.205 18.692 Atomic orbital electron populations 1.22901 0.79543 1.03598 1.00915 1.87849 1.21533 1.29243 1.95602 1.22475 0.92614 0.84135 1.00883 1.21814 0.94550 0.96651 1.02932 1.19915 0.91903 0.89226 0.86829 1.45843 1.55800 1.29403 1.04335 1.20112 0.78609 0.86192 0.84068 1.90708 1.42949 1.26027 1.83871 1.23542 1.08811 1.02371 0.91556 1.88429 1.80535 1.30235 1.00071 1.21054 1.09405 1.01829 0.83219 1.28479 0.92016 0.92478 0.94154 1.81321 1.10185 1.09433 1.14393 1.22375 0.95765 0.99243 1.00653 1.20302 0.97171 0.88323 0.87138 1.44210 1.01285 1.63997 1.23592 1.19441 0.98224 1.31778 0.89562 0.91649 1.25794 1.01981 0.99460 0.97056 1.70121 1.24880 1.49658 1.13104 0.85455 0.79013 0.78095 0.78526 1.20937 1.22456 1.19860 1.20990 0.83691 0.94364 0.99212 1.22220 1.01747 0.97918 0.94754 0.88974 0.92768 0.93312 0.91444 0.92932 0.91873 0.91386 0.74925 0.82445 0.84721 0.81218 0.82310 0.92492 0.93286 0.97778 0.94355 0.94431 0.92406 0.94883 0.88135 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.39 10.70 -148.98 -1.59 -11.98 16 3 C 0.08 1.64 5.50 71.98 0.40 2.03 16 4 C -0.12 -3.36 4.36 30.59 0.13 -3.23 16 5 C 0.21 5.91 0.35 3.63 0.00 5.92 16 6 N -0.70 -16.28 3.16 -422.79 -1.34 -17.62 16 7 C 0.52 13.33 7.10 87.66 0.62 13.95 16 8 O -0.56 -19.43 12.17 -3.02 -0.04 -19.46 16 9 C -0.11 -1.70 6.43 71.24 0.46 -1.24 16 10 S -0.22 -4.34 20.83 -56.49 -1.18 -5.52 16 11 C -0.01 -0.05 6.42 70.18 0.45 0.40 16 12 C 0.25 4.53 15.44 89.43 1.38 5.91 16 13 N -0.47 -12.29 18.54 20.02 0.37 -11.91 16 14 C -0.14 -5.43 4.63 30.67 0.14 -5.29 16 15 C 0.20 9.10 5.00 86.36 0.43 9.53 16 16 N -0.61 -27.68 2.99 -699.95 -2.09 -29.78 16 17 C -0.26 -13.49 9.58 84.03 0.81 -12.68 16 18 H 0.07 3.30 7.85 -2.91 -0.02 3.27 16 19 C -0.05 -2.56 5.04 84.86 0.43 -2.13 16 20 N -0.93 -53.55 11.06 21.65 0.24 -53.31 16 21 Si 0.96 43.94 29.57 68.60 2.03 45.97 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 C 0.14 4.75 6.22 86.22 0.54 5.29 16 26 C -0.13 -3.33 4.72 30.53 0.14 -3.19 16 27 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 1.20 6.40 -2.39 -0.02 1.18 16 31 H 0.05 1.05 7.49 -2.39 -0.02 1.03 16 32 H 0.06 2.14 6.32 -2.39 -0.02 2.13 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.41 7.07 7.35 -92.71 -0.68 6.39 16 35 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.17 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 2.39 6.22 -2.39 -0.01 2.37 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.00 0.20 7.69 -2.39 -0.02 0.18 16 42 H 0.04 2.13 6.10 -2.39 -0.01 2.12 16 43 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 44 H 0.06 1.91 7.93 -2.38 -0.02 1.89 16 45 H 0.03 1.00 6.99 -2.39 -0.02 0.98 16 46 H 0.10 1.84 6.44 -2.39 -0.02 1.82 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -78.84 388.67 3.88 -74.96 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.30 Total: 11.71 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 7.18 Total: 16.95 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -2.82 Total: -112.63 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.63 Total: -31.44 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -1.18 Total: -5.52 kcal Total: -78.84 3.88 -74.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150970633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.524 kcal (2) G-P(sol) polarization free energy of solvation -78.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds