Wall clock time and date at job start Sat Apr 11 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42907 * 113.99951 * 2 1 4 4 C 1.52996 * 109.47086 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46312 * 299.97101 * 4 3 2 6 6 N 1.46500 * 109.46833 * 60.02908 * 5 4 3 7 7 C 1.34776 * 120.00001 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99962 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00346 * 179.97438 * 7 6 5 10 10 S 1.81398 * 109.47300 * 180.02562 * 9 7 6 11 11 C 1.81407 * 102.99902 * 180.02562 * 10 9 7 12 12 C 1.47193 * 109.46749 * 179.97438 * 11 10 9 13 13 N 9.29410 * 101.95139 * 141.99940 * 2 1 3 14 14 C 1.53043 * 109.46005 * 179.97438 * 4 3 2 15 15 C 1.53188 * 109.31445 * 178.62878 * 14 4 3 16 16 N 1.46925 * 108.77701 * 54.63452 * 15 14 4 17 17 C 1.36933 * 120.63218 * 126.36931 * 16 15 14 18 18 H 1.07998 * 120.00198 * 332.45537 * 17 16 15 19 19 C 1.38819 * 119.99952 * 152.17898 * 17 16 15 20 20 N 1.31617 * 120.00072 * 343.15781 * 19 17 16 21 21 Si 1.86804 * 119.99834 * 163.15974 * 19 17 16 22 22 H 1.48501 * 109.47135 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.46995 * 120.00274 * 21 19 17 24 24 H 1.48504 * 109.46877 * 240.00049 * 21 19 17 25 25 C 1.46933 * 118.73707 * 306.64093 * 16 15 14 26 26 C 1.52758 * 109.00408 * 53.31408 * 25 16 15 27 27 H 1.09006 * 109.47329 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47245 * 299.99901 * 1 2 3 29 29 H 1.09005 * 109.47382 * 60.00004 * 1 2 3 30 30 H 1.08998 * 109.47067 * 59.99980 * 3 2 1 31 31 H 1.09008 * 109.46881 * 299.99855 * 3 2 1 32 32 H 1.08992 * 109.47287 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46524 * 300.03088 * 5 4 3 34 34 H 0.97003 * 120.00318 * 0.02562 * 6 5 4 35 35 H 1.09001 * 109.47313 * 300.00352 * 9 7 6 36 36 H 1.09004 * 109.47028 * 59.99899 * 9 7 6 37 37 H 1.09000 * 109.47266 * 300.00068 * 11 10 9 38 38 H 1.08998 * 109.46634 * 59.99921 * 11 10 9 39 39 H 1.08999 * 109.49781 * 58.67318 * 14 4 3 40 40 H 1.09004 * 109.51980 * 298.59529 * 14 4 3 41 41 H 1.09000 * 109.58790 * 294.84843 * 15 14 4 42 42 H 1.09003 * 109.70840 * 174.49438 * 15 14 4 43 43 H 0.97002 * 120.00067 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58175 * 173.14238 * 25 16 15 45 45 H 1.08993 * 109.58871 * 293.56927 * 25 16 15 46 46 H 1.09006 * 109.56332 * 185.55045 * 26 25 16 47 47 H 1.08994 * 109.39241 * 65.51309 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 6 3.9872 0.4258 1.2487 6 7 3.3917 -0.9127 1.2489 7 6 3.6507 -1.7653 2.2601 8 8 4.3763 -1.4242 3.1701 9 6 3.0378 -3.1420 2.2607 10 16 3.5723 -4.0413 3.7426 11 6 2.7465 -5.6467 3.5658 12 6 3.0892 -6.5037 4.7124 13 7 3.3535 -7.1650 5.5981 14 6 4.1575 2.5830 -0.0013 15 6 5.6840 2.4583 0.0327 16 7 6.1138 1.6061 -1.0843 17 6 7.0587 2.0447 -1.9731 18 1 7.1765 3.1022 -2.1580 19 6 7.8690 1.1304 -2.6323 20 7 7.9726 -0.1019 -2.1816 21 14 8.8124 1.6490 -4.1589 22 1 8.5264 3.0754 -4.4567 23 1 10.2682 1.4739 -3.9244 24 1 8.3918 0.8096 -5.3095 25 6 5.5062 0.2766 -1.2330 26 6 3.9858 0.4235 -1.2496 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8901 32 1 5.0737 0.3401 1.2486 33 1 3.6653 0.9669 2.1386 34 1 2.8111 -1.1854 0.5213 35 1 1.9512 -3.0560 2.2606 36 1 3.3594 -3.6833 1.3710 37 1 1.6671 -5.4984 3.5323 38 1 3.0762 -6.1252 2.6436 39 1 3.8178 3.1328 0.8764 40 1 3.8560 3.1154 -0.9034 41 1 5.9929 2.0078 0.9759 42 1 6.1357 3.4454 -0.0660 43 1 8.5385 -0.7409 -2.6424 44 1 5.8386 -0.1745 -2.1680 45 1 5.8003 -0.3554 -0.3951 46 1 3.5237 -0.5637 -1.2604 47 1 3.6853 0.9755 -2.1401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162111765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:32 Heat of formation + Delta-G solvation = -23.539357 kcal Electronic energy + Delta-G solvation = -28326.798822 eV Core-core repulsion = 24444.309686 eV Total energy + Delta-G solvation = -3882.489136 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.07299 -38.63103 -37.17554 -36.94154 -34.56333 -33.12838 -31.12477 -30.71770 -30.01762 -29.93855 -27.73184 -26.18047 -25.40140 -23.88960 -22.33119 -20.93779 -20.47946 -18.88094 -18.18537 -17.13012 -16.58938 -16.42655 -16.18211 -15.97296 -15.76631 -15.53301 -15.29283 -15.02348 -14.67708 -14.36342 -13.92932 -13.78681 -13.64599 -13.41466 -13.15625 -12.96268 -12.90549 -12.70613 -12.44087 -12.29849 -12.12368 -11.95471 -11.64932 -11.48663 -11.31904 -10.95290 -10.75050 -10.57614 -10.30149 -10.26155 -10.21977 -9.98892 -9.80688 -9.71020 -9.56152 -9.43689 -8.69346 -8.45174 -7.95441 -6.66710 -5.79014 -3.21358 0.75151 2.02350 2.38077 2.76228 2.76929 3.29919 3.36076 3.44267 3.44446 3.46184 3.72989 4.48771 4.56850 4.76540 4.80488 4.80971 4.89405 4.97598 5.05364 5.17267 5.22602 5.30616 5.39223 5.45878 5.47798 5.52225 5.60590 5.66815 5.97161 6.01496 6.19008 6.31912 6.35160 6.56457 6.58818 6.66227 6.74430 6.81275 6.93674 7.03014 7.12290 7.35477 7.66495 7.79364 7.80764 8.44149 8.44261 9.20944 9.84201 10.40474 11.29258 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.002980 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.302594 B = 9392.638286 C =10986.422048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.072 3.928 4 C -0.059 4.059 5 C 0.133 3.867 6 N -0.701 5.701 7 C 0.524 3.476 8 O -0.530 6.530 9 C -0.130 4.130 10 S -0.134 6.134 11 C -0.028 4.028 12 C 0.224 3.776 13 N -0.410 5.410 14 C -0.119 4.119 15 C 0.142 3.858 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.900 5.900 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.170 3.830 26 C -0.125 4.125 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.410 0.590 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.023 0.977 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.086 0.914 45 H 0.022 0.978 46 H 0.054 0.946 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.077 -4.117 4.077 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.005 4.005 4 C -0.059 4.059 5 C 0.010 3.990 6 N -0.358 5.358 7 C 0.307 3.693 8 O -0.408 6.408 9 C -0.281 4.281 10 S 0.091 5.909 11 C -0.178 4.178 12 C -0.095 4.095 13 N -0.089 5.089 14 C -0.159 4.159 15 C 0.016 3.984 16 N -0.314 5.314 17 C -0.382 4.382 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.544 5.544 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.044 3.956 26 C -0.165 4.165 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.251 0.749 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.040 0.960 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.040 0.960 46 H 0.073 0.927 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.285 -4.801 6.756 19.169 hybrid contribution -1.025 0.175 -2.627 2.825 sum -18.310 -4.626 4.129 19.331 Atomic orbital electron populations 1.22700 0.81366 1.02385 0.99882 1.87534 1.19307 1.28938 1.95348 1.22779 0.93907 0.83849 0.99918 1.20809 0.91389 0.97319 0.96402 1.21487 0.99607 0.81437 0.96508 1.46107 1.50145 1.14691 1.24837 1.19442 0.81683 0.85200 0.82998 1.90760 1.37104 1.77006 1.35895 1.23585 1.05277 0.98186 1.01064 1.88113 1.64783 1.07729 1.30325 1.20830 1.05613 0.96397 0.95006 1.27791 0.93943 0.93879 0.93891 1.81290 1.07810 1.09833 1.09950 1.21989 0.99356 0.93485 1.01087 1.20936 0.90548 0.95510 0.91418 1.44035 1.44668 1.14888 1.27770 1.19206 1.10347 0.92276 1.16350 0.91670 1.25041 0.97547 0.96649 1.00392 1.70045 1.40790 1.04434 1.39149 0.86257 0.79466 0.77953 0.83284 1.20321 1.21757 1.21642 1.20720 0.86327 0.86815 1.01719 1.22117 1.00934 0.98362 0.95064 0.89925 0.94336 0.94141 0.93523 0.93065 0.89588 0.92462 0.74884 0.86869 0.86569 0.85573 0.85403 0.92671 0.91530 0.95962 0.92537 0.93714 0.89577 0.96047 0.92727 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.06 6.73 -35.23 -0.24 -4.30 16 3 C 0.07 0.82 4.80 37.16 0.18 1.00 16 4 C -0.06 -0.84 0.51 -154.46 -0.08 -0.92 16 5 C 0.13 2.06 3.80 -4.04 -0.02 2.05 16 6 N -0.70 -9.44 4.62 -60.29 -0.28 -9.72 16 7 C 0.52 7.35 7.85 -10.99 -0.09 7.27 16 8 O -0.53 -9.85 15.86 5.55 0.09 -9.76 16 9 C -0.13 -1.16 6.42 36.00 0.23 -0.92 16 10 S -0.13 -1.40 20.83 -107.50 -2.24 -3.64 16 11 C -0.03 -0.16 6.42 34.37 0.22 0.06 16 12 C 0.22 2.09 15.44 -20.75 -0.32 1.77 16 13 N -0.41 -5.12 18.54 42.17 0.78 -4.34 16 14 C -0.12 -1.82 4.91 -26.61 -0.13 -1.95 16 15 C 0.14 2.79 6.05 -3.71 -0.02 2.77 16 16 N -0.59 -13.99 3.00 -172.58 -0.52 -14.50 16 17 C -0.25 -6.68 9.58 -15.06 -0.14 -6.83 16 18 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -25.60 11.18 55.49 0.62 -24.98 16 21 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 C 0.17 3.78 4.81 -3.93 -0.02 3.76 16 26 C -0.13 -2.13 4.57 -26.83 -0.12 -2.25 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 32 H 0.09 1.66 4.99 -51.93 -0.26 1.40 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.41 4.84 4.71 -40.82 -0.19 4.65 16 35 H 0.11 0.65 8.14 -51.92 -0.42 0.22 16 36 H 0.12 0.80 8.14 -51.92 -0.42 0.38 16 37 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 38 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.46 6.69 -51.93 -0.35 0.11 16 42 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.09 2.20 6.05 -51.93 -0.31 1.89 16 45 H 0.02 0.52 6.70 -51.93 -0.35 0.17 16 46 H 0.05 0.84 6.49 -51.93 -0.34 0.51 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -33.90 388.40 -7.50 -41.39 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.25 Total: 0.60 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 0.72 Total: 7.14 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.61 Total: -53.54 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.15 Total: -14.06 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.24 Total: -3.64 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.90 -7.50 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162111765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.853 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds