Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42907 * 113.99951 * 2 1 4 4 C 1.52996 * 109.47086 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46312 * 299.97101 * 4 3 2 6 6 N 1.46500 * 109.46833 * 60.02908 * 5 4 3 7 7 C 1.34776 * 120.00001 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99962 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00346 * 179.97438 * 7 6 5 10 10 S 1.81398 * 109.47300 * 180.02562 * 9 7 6 11 11 C 1.81407 * 102.99902 * 180.02562 * 10 9 7 12 12 C 1.47193 * 109.46749 * 179.97438 * 11 10 9 13 13 N 9.29410 * 101.95139 * 141.99940 * 2 1 3 14 14 C 1.53043 * 109.46005 * 179.97438 * 4 3 2 15 15 C 1.53188 * 109.31445 * 178.62878 * 14 4 3 16 16 N 1.46925 * 108.77701 * 54.63452 * 15 14 4 17 17 C 1.36933 * 120.63218 * 126.36931 * 16 15 14 18 18 H 1.07998 * 120.00198 * 332.45537 * 17 16 15 19 19 C 1.38819 * 119.99952 * 152.17898 * 17 16 15 20 20 N 1.31617 * 120.00072 * 343.15781 * 19 17 16 21 21 Si 1.86804 * 119.99834 * 163.15974 * 19 17 16 22 22 H 1.48501 * 109.47135 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.46995 * 120.00274 * 21 19 17 24 24 H 1.48504 * 109.46877 * 240.00049 * 21 19 17 25 25 C 1.46933 * 118.73707 * 306.64093 * 16 15 14 26 26 C 1.52758 * 109.00408 * 53.31408 * 25 16 15 27 27 H 1.09006 * 109.47329 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47245 * 299.99901 * 1 2 3 29 29 H 1.09005 * 109.47382 * 60.00004 * 1 2 3 30 30 H 1.08998 * 109.47067 * 59.99980 * 3 2 1 31 31 H 1.09008 * 109.46881 * 299.99855 * 3 2 1 32 32 H 1.08992 * 109.47287 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46524 * 300.03088 * 5 4 3 34 34 H 0.97003 * 120.00318 * 0.02562 * 6 5 4 35 35 H 1.09001 * 109.47313 * 300.00352 * 9 7 6 36 36 H 1.09004 * 109.47028 * 59.99899 * 9 7 6 37 37 H 1.09000 * 109.47266 * 300.00068 * 11 10 9 38 38 H 1.08998 * 109.46634 * 59.99921 * 11 10 9 39 39 H 1.08999 * 109.49781 * 58.67318 * 14 4 3 40 40 H 1.09004 * 109.51980 * 298.59529 * 14 4 3 41 41 H 1.09000 * 109.58790 * 294.84843 * 15 14 4 42 42 H 1.09003 * 109.70840 * 174.49438 * 15 14 4 43 43 H 0.97002 * 120.00067 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58175 * 173.14238 * 25 16 15 45 45 H 1.08993 * 109.58871 * 293.56927 * 25 16 15 46 46 H 1.09006 * 109.56332 * 185.55045 * 26 25 16 47 47 H 1.08994 * 109.39241 * 65.51309 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 6 3.9872 0.4258 1.2487 6 7 3.3917 -0.9127 1.2489 7 6 3.6507 -1.7653 2.2601 8 8 4.3763 -1.4242 3.1701 9 6 3.0378 -3.1420 2.2607 10 16 3.5723 -4.0413 3.7426 11 6 2.7465 -5.6467 3.5658 12 6 3.0892 -6.5037 4.7124 13 7 3.3535 -7.1650 5.5981 14 6 4.1575 2.5830 -0.0013 15 6 5.6840 2.4583 0.0327 16 7 6.1138 1.6061 -1.0843 17 6 7.0587 2.0447 -1.9731 18 1 7.1765 3.1022 -2.1580 19 6 7.8690 1.1304 -2.6323 20 7 7.9726 -0.1019 -2.1816 21 14 8.8124 1.6490 -4.1589 22 1 8.5264 3.0754 -4.4567 23 1 10.2682 1.4739 -3.9244 24 1 8.3918 0.8096 -5.3095 25 6 5.5062 0.2766 -1.2330 26 6 3.9858 0.4235 -1.2496 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8901 32 1 5.0737 0.3401 1.2486 33 1 3.6653 0.9669 2.1386 34 1 2.8111 -1.1854 0.5213 35 1 1.9512 -3.0560 2.2606 36 1 3.3594 -3.6833 1.3710 37 1 1.6671 -5.4984 3.5323 38 1 3.0762 -6.1252 2.6436 39 1 3.8178 3.1328 0.8764 40 1 3.8560 3.1154 -0.9034 41 1 5.9929 2.0078 0.9759 42 1 6.1357 3.4454 -0.0660 43 1 8.5385 -0.7409 -2.6424 44 1 5.8386 -0.1745 -2.1680 45 1 5.8003 -0.3554 -0.3951 46 1 3.5237 -0.5637 -1.2604 47 1 3.6853 0.9755 -2.1401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162111765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = -46.690752 kcal Electronic energy + Delta-G solvation = -28327.802742 eV Core-core repulsion = 24444.309686 eV Total energy + Delta-G solvation = -3883.493056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.25965 -39.80325 -38.22145 -37.73206 -36.03674 -34.57381 -32.75096 -31.59904 -31.40602 -30.75954 -28.91172 -27.26820 -26.47934 -25.43540 -23.85393 -22.47753 -21.58446 -20.04772 -19.30336 -18.52930 -17.79982 -17.22877 -17.06228 -16.96463 -16.81917 -16.61483 -16.33922 -16.09512 -15.79502 -15.32962 -15.28835 -15.12628 -15.01097 -14.73906 -14.35731 -14.08471 -13.89006 -13.77565 -13.59691 -13.26257 -13.04003 -13.01435 -12.95530 -12.86762 -12.61488 -12.51668 -12.24109 -12.21984 -11.93558 -11.79171 -11.41819 -11.18937 -11.06731 -10.94433 -10.89384 -10.51685 -10.42717 -9.87691 -8.71403 -8.61731 -7.83595 -5.28397 0.06896 1.36454 1.46729 1.48866 1.59025 1.69068 1.71381 2.09790 2.34509 2.53486 2.84534 2.91507 3.30934 3.71182 3.78859 3.83947 4.03716 4.07048 4.23196 4.26996 4.32805 4.41709 4.46221 4.52282 4.57139 4.60522 4.68739 4.74449 4.76744 4.78719 4.90065 4.96378 5.02786 5.08145 5.21661 5.29023 5.33063 5.41155 5.53927 5.65795 5.69982 5.85332 6.31435 6.42835 6.43741 6.75734 7.19405 7.41613 7.91529 8.42224 9.22238 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.002980 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.302594 B = 9392.638286 C =10986.422048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.405 6.405 3 C 0.082 3.918 4 C -0.051 4.051 5 C 0.142 3.858 6 N -0.692 5.692 7 C 0.513 3.487 8 O -0.584 6.584 9 C -0.105 4.105 10 S -0.224 6.224 11 C -0.003 4.003 12 C 0.246 3.754 13 N -0.475 5.475 14 C -0.109 4.109 15 C 0.137 3.863 16 N -0.609 5.609 17 C -0.258 4.258 18 H 0.067 0.933 19 C -0.053 4.053 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.297 1.297 24 H -0.289 1.289 25 C 0.181 3.819 26 C -0.109 4.109 27 H 0.104 0.896 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.060 0.940 34 H 0.420 0.580 35 H 0.157 0.843 36 H 0.142 0.858 37 H 0.171 0.829 38 H 0.163 0.837 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.008 0.992 42 H 0.054 0.946 43 H 0.248 0.752 44 H 0.048 0.952 45 H -0.009 1.009 46 H 0.072 0.928 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.783 -3.893 2.798 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.324 6.324 3 C 0.006 3.994 4 C -0.051 4.051 5 C 0.017 3.983 6 N -0.349 5.349 7 C 0.299 3.701 8 O -0.465 6.465 9 C -0.256 4.256 10 S 0.000 6.000 11 C -0.153 4.153 12 C -0.071 4.071 13 N -0.154 5.154 14 C -0.148 4.148 15 C 0.012 3.988 16 N -0.333 5.333 17 C -0.388 4.388 18 H 0.084 0.916 19 C -0.248 4.248 20 N -0.580 5.580 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.224 1.224 24 H -0.216 1.216 25 C 0.056 3.944 26 C -0.148 4.148 27 H 0.122 0.878 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.264 0.736 35 H 0.175 0.825 36 H 0.160 0.840 37 H 0.188 0.812 38 H 0.181 0.819 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.026 0.974 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.009 0.991 46 H 0.090 0.910 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.046 -4.559 5.461 22.215 hybrid contribution 0.138 0.116 -2.177 2.185 sum -20.908 -4.443 3.284 21.625 Atomic orbital electron populations 1.22911 0.79271 1.04064 1.00465 1.87471 1.21361 1.28097 1.95505 1.22533 0.90838 0.84813 1.01248 1.20681 0.94258 0.96022 0.94173 1.21200 0.96885 0.82961 0.97224 1.46032 1.49818 1.13956 1.25131 1.20358 0.80851 0.86990 0.81931 1.90742 1.39458 1.78423 1.37907 1.23480 1.07195 0.94390 1.00536 1.88497 1.66985 1.12024 1.32477 1.21060 1.07421 0.92285 0.94523 1.28477 0.92136 0.92932 0.93589 1.81310 1.09981 1.12118 1.11998 1.21843 0.95513 0.94631 1.02857 1.21081 0.93996 0.94348 0.89421 1.44316 1.44645 1.15646 1.28652 1.19548 1.10387 0.92415 1.16481 0.91554 1.25780 0.99014 0.96803 1.03196 1.70213 1.41965 1.05456 1.40414 0.85254 0.77548 0.78072 0.79848 1.19013 1.22442 1.21597 1.20457 0.89936 0.85710 0.98312 1.21865 0.96524 0.99912 0.96493 0.87802 0.93653 0.93632 0.91928 0.91986 0.94418 0.92193 0.73623 0.82511 0.83960 0.81195 0.81926 0.89512 0.90919 0.97430 0.92737 0.94335 0.93394 0.99120 0.90955 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.72 6.73 -148.98 -1.00 -7.73 16 3 C 0.08 1.57 4.80 71.98 0.35 1.91 16 4 C -0.05 -1.37 0.51 -52.15 -0.03 -1.40 16 5 C 0.14 4.36 3.80 86.38 0.33 4.69 16 6 N -0.69 -17.69 4.62 -463.06 -2.14 -19.83 16 7 C 0.51 13.94 7.85 87.66 0.69 14.63 16 8 O -0.58 -22.33 15.86 -3.05 -0.05 -22.38 16 9 C -0.11 -1.55 6.42 71.24 0.46 -1.09 16 10 S -0.22 -4.35 20.83 -56.49 -1.18 -5.53 16 11 C 0.00 -0.02 6.42 70.17 0.45 0.43 16 12 C 0.25 4.22 15.44 89.43 1.38 5.60 16 13 N -0.47 -11.80 18.54 20.01 0.37 -11.43 16 14 C -0.11 -3.15 4.91 30.67 0.15 -3.00 16 15 C 0.14 5.46 6.05 86.36 0.52 5.98 16 16 N -0.61 -29.72 3.00 -699.93 -2.10 -31.82 16 17 C -0.26 -13.99 9.58 84.04 0.81 -13.19 16 18 H 0.07 3.51 7.88 -2.91 -0.02 3.48 16 19 C -0.05 -2.93 4.92 84.86 0.42 -2.52 16 20 N -0.93 -55.44 11.18 21.65 0.24 -55.20 16 21 Si 0.96 44.69 29.59 68.60 2.03 46.72 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 C 0.18 8.38 4.81 86.22 0.41 8.80 16 26 C -0.11 -3.60 4.57 30.53 0.14 -3.46 16 27 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.04 1.54 4.99 -2.39 -0.01 1.53 16 33 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.42 8.75 4.71 -92.71 -0.44 8.32 16 35 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.17 -0.09 8.14 -2.39 -0.02 -0.10 16 38 H 0.16 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.01 0.33 6.69 -2.39 -0.02 0.32 16 42 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 43 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 44 H 0.05 2.56 6.05 -2.39 -0.01 2.55 16 45 H -0.01 -0.47 6.70 -2.39 -0.02 -0.49 16 46 H 0.07 2.11 6.49 -2.38 -0.02 2.10 16 47 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -82.14 388.40 4.04 -78.10 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.55 Total: 10.18 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 7.32 Total: 18.92 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -3.63 Total: -118.27 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.05 Total: -30.11 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -4.35 SS G_CDS: -1.18 Total: -5.53 kcal Total: -82.14 4.04 -78.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162111765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.406 kcal (2) G-P(sol) polarization free energy of solvation -82.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds