Wall clock time and date at job start Sat Apr 11 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46907 * 110.99919 * 2 1 4 4 C 1.46895 * 111.00480 * 123.95440 * 2 1 3 5 5 C 1.52997 * 109.47496 * 169.99852 * 4 2 1 6 6 C 1.53003 * 109.47307 * 180.02562 * 5 4 2 7 7 O 1.42899 * 109.46882 * 180.02562 * 6 5 4 8 8 C 1.35765 * 116.99788 * 180.02562 * 7 6 5 9 9 C 1.38903 * 119.60515 * 179.97438 * 8 7 6 10 10 C 1.38319 * 119.19174 * 180.02562 * 9 8 7 11 11 C 1.39413 * 118.42104 * 359.97438 * 10 9 8 12 12 N 1.39987 * 120.42809 * 180.02562 * 11 10 9 13 13 C 1.38252 * 119.99910 * 173.71153 * 12 11 10 14 14 C 1.39016 * 119.99952 * 298.10661 * 13 12 11 15 15 H 1.08001 * 120.00173 * 161.07772 * 14 13 12 16 16 C 1.40827 * 120.00114 * 341.07910 * 14 13 12 17 17 N 1.30349 * 119.99619 * 349.94782 * 16 14 13 18 18 Si 1.86796 * 120.00032 * 169.94529 * 16 14 13 19 19 H 1.48503 * 109.47104 * 90.00297 * 18 16 14 20 20 H 1.48508 * 109.46995 * 210.00042 * 18 16 14 21 21 H 1.48493 * 109.47369 * 329.99943 * 18 16 14 22 22 C 1.41174 * 119.99717 * 118.10496 * 13 12 11 23 23 C 1.43199 * 119.99569 * 174.47644 * 22 13 12 24 24 N 9.36392 * 135.81745 * 175.49142 * 6 1 2 25 25 C 1.43197 * 120.00214 * 354.47817 * 22 13 12 26 26 N 9.80473 * 137.33808 * 196.08303 * 5 1 2 27 27 C 1.38702 * 119.14115 * 359.97438 * 11 10 9 28 28 N 1.31951 * 120.72864 * 0.03055 * 27 11 10 29 29 H 1.08996 * 109.46946 * 296.03845 * 1 2 3 30 30 H 1.08993 * 109.47532 * 56.04691 * 1 2 3 31 31 H 1.09000 * 109.46564 * 176.04510 * 1 2 3 32 32 H 1.08993 * 109.47331 * 183.95306 * 3 2 1 33 33 H 1.08996 * 109.46865 * 303.95795 * 3 2 1 34 34 H 1.09002 * 109.46552 * 63.95764 * 3 2 1 35 35 H 1.09008 * 109.47093 * 50.00338 * 4 2 1 36 36 H 1.08995 * 109.47148 * 290.00612 * 4 2 1 37 37 H 1.09004 * 109.46775 * 60.00610 * 5 4 2 38 38 H 1.08995 * 109.47543 * 300.00519 * 5 4 2 39 39 H 1.08996 * 109.46926 * 60.00273 * 6 5 4 40 40 H 1.09003 * 109.47065 * 300.00381 * 6 5 4 41 41 H 1.08006 * 120.40443 * 0.04245 * 9 8 7 42 42 H 1.07995 * 120.78882 * 180.02562 * 10 9 8 43 43 H 0.96994 * 119.99911 * 353.70287 * 12 11 10 44 44 H 0.96997 * 119.99671 * 185.05387 * 17 16 14 45 45 H 1.07999 * 119.63009 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.5045 -0.9553 0.9702 6 6 4.0528 -1.7536 2.1547 7 8 5.4622 -1.9300 1.9987 8 6 6.1080 -2.6232 2.9711 9 6 7.4785 -2.8271 2.8736 10 6 8.1278 -3.5350 3.8689 11 6 7.3750 -4.0185 4.9381 12 7 7.9892 -4.7398 5.9687 13 6 7.2618 -5.1029 7.0870 14 6 6.7105 -4.1239 7.9056 15 1 5.9078 -4.3754 8.5829 16 6 7.1987 -2.8040 7.8517 17 7 8.2878 -2.5387 7.1865 18 14 6.2854 -1.4337 8.7334 19 1 6.8040 -1.3047 10.1189 20 1 6.4908 -0.1547 8.0070 21 1 4.8356 -1.7519 8.7751 22 6 7.0790 -6.4679 7.3975 23 6 6.4285 -6.8439 8.6165 24 7 5.9129 -7.1397 9.5853 25 6 7.5440 -7.4764 6.4935 26 7 7.9130 -8.2742 5.7798 27 6 6.0099 -3.7747 4.9680 28 7 5.4250 -3.0952 3.9999 29 1 -0.3633 0.4511 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3632 -1.0253 -0.0709 32 1 3.0827 1.3434 -0.0708 33 1 1.5897 1.9164 -0.8524 34 1 1.7044 1.8723 0.9234 35 1 1.5091 -1.7407 1.1755 36 1 1.7975 -0.2248 2.0627 37 1 3.9909 0.0194 0.9323 38 1 3.7025 -1.4964 0.0450 39 1 3.5663 -2.7283 2.1923 40 1 3.8548 -1.2128 3.0802 41 1 8.0306 -2.4374 2.0311 42 1 9.1926 -3.7083 3.8194 43 1 8.9250 -4.9850 5.8982 44 1 8.6645 -1.6452 7.2094 45 1 5.4193 -4.1453 5.7928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169084229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:43 Heat of formation + Delta-G solvation = 60.247802 kcal Electronic energy + Delta-G solvation = -28168.021253 eV Core-core repulsion = 24186.014201 eV Total energy + Delta-G solvation = -3982.007053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.17771 -38.50762 -37.81941 -36.73766 -35.28024 -34.77283 -33.67381 -32.62089 -31.98195 -30.57727 -27.96686 -27.88257 -27.21858 -26.39973 -23.69317 -22.86918 -21.97495 -21.27520 -20.92270 -19.03899 -18.01337 -17.32638 -17.13430 -16.37374 -16.24369 -15.93757 -15.59874 -15.39780 -14.96428 -14.93480 -14.05079 -13.99533 -13.81205 -13.33078 -13.11015 -12.88995 -12.76173 -12.69457 -12.61231 -12.35102 -12.25476 -12.16857 -12.04821 -11.80258 -11.70894 -11.68673 -11.60830 -11.52847 -11.39638 -11.19487 -11.05247 -10.92552 -10.80592 -10.48389 -10.16762 -9.88220 -9.17805 -9.07559 -8.69193 -8.17680 -7.75230 -6.58595 -5.51981 1.68013 1.83818 2.28502 2.67146 2.73615 2.84227 3.22545 3.35302 3.78192 3.83714 3.96751 4.04987 4.17815 4.38074 4.43669 4.70240 4.81960 4.88253 4.97663 5.07846 5.11953 5.13463 5.22387 5.30393 5.35047 5.43542 5.43905 5.48218 5.54851 5.55566 5.60138 5.66461 5.71535 5.98229 6.04836 6.12711 6.15384 6.26930 6.38310 6.60217 6.68657 6.69675 6.81547 7.00911 7.23564 7.59488 7.70618 7.75213 8.20900 8.41489 8.52705 8.94264 9.09997 9.13927 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.002667 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.014710 B =10496.910149 C =11095.024104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.019 3.981 4 C 0.058 3.942 5 C -0.116 4.116 6 C 0.077 3.923 7 O -0.315 6.315 8 C 0.244 3.756 9 C -0.146 4.146 10 C -0.119 4.119 11 C 0.181 3.819 12 N -0.655 5.655 13 C 0.378 3.622 14 C -0.377 4.377 15 H 0.111 0.889 16 C 0.072 3.928 17 N -0.713 5.713 18 Si 0.920 3.080 19 H -0.257 1.257 20 H -0.267 1.267 21 H -0.246 1.246 22 C -0.312 4.312 23 C 0.324 3.676 24 N -0.533 5.533 25 C 0.312 3.688 26 N -0.534 5.534 27 C 0.073 3.927 28 N -0.504 5.504 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.404 0.596 44 H 0.301 0.699 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 14.056 -10.772 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.129 4.129 4 C -0.070 4.070 5 C -0.154 4.154 6 C 0.001 3.999 7 O -0.224 6.224 8 C 0.064 3.936 9 C -0.167 4.167 10 C -0.149 4.149 11 C 0.076 3.924 12 N -0.277 5.277 13 C 0.274 3.726 14 C -0.405 4.405 15 H 0.129 0.871 16 C -0.160 4.160 17 N -0.331 5.331 18 Si 0.742 3.258 19 H -0.182 1.182 20 H -0.192 1.192 21 H -0.169 1.169 22 C -0.331 4.331 23 C 0.016 3.984 24 N -0.216 5.216 25 C 0.004 3.996 26 N -0.216 5.216 27 C -0.088 4.088 28 N -0.225 5.225 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.240 0.760 44 H 0.113 0.887 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.588 12.576 -11.070 18.003 hybrid contribution 0.735 1.322 1.155 1.903 sum -5.853 13.898 -9.915 18.048 Atomic orbital electron populations 1.22384 0.87121 1.02428 1.00486 1.61939 1.07932 1.14061 1.43245 1.22467 1.01366 0.88650 1.00410 1.22002 0.94960 0.98664 0.91380 1.21523 0.94189 1.00990 0.98720 1.22338 0.79366 1.00189 0.98016 1.86113 1.22474 1.70425 1.43415 1.19410 0.89296 0.96036 0.88843 1.20636 0.91832 1.03219 1.01002 1.20744 0.99750 1.00300 0.94100 1.18397 0.92770 0.92634 0.88589 1.41298 1.12445 1.57510 1.16470 1.16713 0.84169 0.88672 0.83077 1.20398 1.14275 0.92091 1.13745 0.87065 1.26475 0.94673 1.00790 0.94044 1.69496 1.13885 1.24744 1.24978 0.85985 0.81690 0.78230 0.79911 1.18166 1.19163 1.16920 1.13001 1.35878 0.87660 0.96514 1.24741 0.90560 0.91875 0.91211 1.81090 1.17906 1.09048 1.13508 1.25026 0.90865 0.91922 0.91762 1.80910 1.17678 1.10098 1.12873 1.22189 0.91232 0.98418 0.96928 1.67143 1.40113 1.12781 1.02511 0.95604 0.91344 0.91198 0.90845 0.91458 0.95582 0.90261 0.94379 0.91153 0.90213 0.91924 0.92253 0.85120 0.84864 0.75960 0.88679 0.81830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.57 60.06 0.57 0.75 16 2 N -0.55 -4.94 5.02 -251.27 -1.26 -6.20 16 3 C 0.02 0.15 9.32 60.07 0.56 0.71 16 4 C 0.06 0.54 4.96 -3.83 -0.02 0.52 16 5 C -0.12 -1.21 5.51 -26.73 -0.15 -1.36 16 6 C 0.08 1.01 5.31 37.16 0.20 1.20 16 7 O -0.32 -4.90 10.12 -19.00 -0.19 -5.09 16 8 C 0.24 4.13 7.49 -17.15 -0.13 4.00 16 9 C -0.15 -2.25 10.03 -39.31 -0.39 -2.64 16 10 C -0.12 -1.86 10.04 -39.11 -0.39 -2.25 16 11 C 0.18 3.18 5.14 -83.52 -0.43 2.75 16 12 N -0.66 -11.70 3.29 -8.06 -0.03 -11.73 16 13 C 0.38 7.35 4.94 -83.57 -0.41 6.94 16 14 C -0.38 -7.27 7.01 -38.31 -0.27 -7.54 16 15 H 0.11 2.19 7.08 -52.49 -0.37 1.82 16 16 C 0.07 1.30 4.82 -17.20 -0.08 1.21 16 17 N -0.71 -12.69 10.94 55.59 0.61 -12.08 16 18 Si 0.92 14.54 29.58 -169.99 -5.03 9.51 16 19 H -0.26 -4.08 7.11 56.52 0.40 -3.68 16 20 H -0.27 -4.24 7.11 56.52 0.40 -3.84 16 21 H -0.25 -3.99 7.11 56.52 0.40 -3.58 16 22 C -0.31 -6.53 5.88 -104.93 -0.62 -7.15 16 23 C 0.32 7.18 13.94 -22.46 -0.31 6.87 16 24 N -0.53 -12.38 18.54 41.86 0.78 -11.61 16 25 C 0.31 6.83 14.81 -22.60 -0.33 6.49 16 26 N -0.53 -12.26 18.51 41.69 0.77 -11.48 16 27 C 0.07 1.35 9.80 -17.33 -0.17 1.18 16 28 N -0.50 -9.08 9.20 -13.16 -0.12 -9.21 16 29 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.07 0.57 6.47 -51.93 -0.34 0.24 16 33 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 34 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.08 0.71 8.06 -51.92 -0.42 0.30 16 36 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 37 H 0.07 0.72 6.55 -51.93 -0.34 0.38 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 41 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.40 6.84 8.85 -40.82 -0.36 6.48 16 44 H 0.30 4.95 8.29 -40.82 -0.34 4.61 16 45 H 0.16 3.08 6.27 -52.49 -0.33 2.75 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -24.50 395.92 -6.82 -31.32 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.93 Total: 8.90 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -2.38 Total: 11.69 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.75 Total: -62.30 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.19 Total: -5.09 kcal Atomic # 14 Polarization: 14.54 SS G_CDS: -5.03 Total: 9.51 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -24.50 -6.82 -31.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.565 kcal (2) G-P(sol) polarization free energy of solvation -24.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds