Wall clock time and date at job start Sat Apr 11 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46907 * 110.99919 * 2 1 4 4 C 1.46895 * 111.00480 * 123.95440 * 2 1 3 5 5 C 1.52997 * 109.47496 * 169.99852 * 4 2 1 6 6 C 1.53003 * 109.47307 * 180.02562 * 5 4 2 7 7 O 1.42899 * 109.46882 * 180.02562 * 6 5 4 8 8 C 1.35765 * 116.99788 * 180.02562 * 7 6 5 9 9 C 1.38903 * 119.60515 * 179.97438 * 8 7 6 10 10 C 1.38319 * 119.19174 * 180.02562 * 9 8 7 11 11 C 1.39413 * 118.42104 * 359.97438 * 10 9 8 12 12 N 1.39987 * 120.42809 * 180.02562 * 11 10 9 13 13 C 1.38252 * 119.99910 * 173.71153 * 12 11 10 14 14 C 1.39016 * 119.99952 * 298.10661 * 13 12 11 15 15 H 1.08001 * 120.00173 * 161.07772 * 14 13 12 16 16 C 1.40827 * 120.00114 * 341.07910 * 14 13 12 17 17 N 1.30349 * 119.99619 * 349.94782 * 16 14 13 18 18 Si 1.86796 * 120.00032 * 169.94529 * 16 14 13 19 19 H 1.48503 * 109.47104 * 90.00297 * 18 16 14 20 20 H 1.48508 * 109.46995 * 210.00042 * 18 16 14 21 21 H 1.48493 * 109.47369 * 329.99943 * 18 16 14 22 22 C 1.41174 * 119.99717 * 118.10496 * 13 12 11 23 23 C 1.43199 * 119.99569 * 174.47644 * 22 13 12 24 24 N 9.36392 * 135.81745 * 175.49142 * 6 1 2 25 25 C 1.43197 * 120.00214 * 354.47817 * 22 13 12 26 26 N 9.80473 * 137.33808 * 196.08303 * 5 1 2 27 27 C 1.38702 * 119.14115 * 359.97438 * 11 10 9 28 28 N 1.31951 * 120.72864 * 0.03055 * 27 11 10 29 29 H 1.08996 * 109.46946 * 296.03845 * 1 2 3 30 30 H 1.08993 * 109.47532 * 56.04691 * 1 2 3 31 31 H 1.09000 * 109.46564 * 176.04510 * 1 2 3 32 32 H 1.08993 * 109.47331 * 183.95306 * 3 2 1 33 33 H 1.08996 * 109.46865 * 303.95795 * 3 2 1 34 34 H 1.09002 * 109.46552 * 63.95764 * 3 2 1 35 35 H 1.09008 * 109.47093 * 50.00338 * 4 2 1 36 36 H 1.08995 * 109.47148 * 290.00612 * 4 2 1 37 37 H 1.09004 * 109.46775 * 60.00610 * 5 4 2 38 38 H 1.08995 * 109.47543 * 300.00519 * 5 4 2 39 39 H 1.08996 * 109.46926 * 60.00273 * 6 5 4 40 40 H 1.09003 * 109.47065 * 300.00381 * 6 5 4 41 41 H 1.08006 * 120.40443 * 0.04245 * 9 8 7 42 42 H 1.07995 * 120.78882 * 180.02562 * 10 9 8 43 43 H 0.96994 * 119.99911 * 353.70287 * 12 11 10 44 44 H 0.96997 * 119.99671 * 185.05387 * 17 16 14 45 45 H 1.07999 * 119.63009 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.5045 -0.9553 0.9702 6 6 4.0528 -1.7536 2.1547 7 8 5.4622 -1.9300 1.9987 8 6 6.1080 -2.6232 2.9711 9 6 7.4785 -2.8271 2.8736 10 6 8.1278 -3.5350 3.8689 11 6 7.3750 -4.0185 4.9381 12 7 7.9892 -4.7398 5.9687 13 6 7.2618 -5.1029 7.0870 14 6 6.7105 -4.1239 7.9056 15 1 5.9078 -4.3754 8.5829 16 6 7.1987 -2.8040 7.8517 17 7 8.2878 -2.5387 7.1865 18 14 6.2854 -1.4337 8.7334 19 1 6.8040 -1.3047 10.1189 20 1 6.4908 -0.1547 8.0070 21 1 4.8356 -1.7519 8.7751 22 6 7.0790 -6.4679 7.3975 23 6 6.4285 -6.8439 8.6165 24 7 5.9129 -7.1397 9.5853 25 6 7.5440 -7.4764 6.4935 26 7 7.9130 -8.2742 5.7798 27 6 6.0099 -3.7747 4.9680 28 7 5.4250 -3.0952 3.9999 29 1 -0.3633 0.4511 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3632 -1.0253 -0.0709 32 1 3.0827 1.3434 -0.0708 33 1 1.5897 1.9164 -0.8524 34 1 1.7044 1.8723 0.9234 35 1 1.5091 -1.7407 1.1755 36 1 1.7975 -0.2248 2.0627 37 1 3.9909 0.0194 0.9323 38 1 3.7025 -1.4964 0.0450 39 1 3.5663 -2.7283 2.1923 40 1 3.8548 -1.2128 3.0802 41 1 8.0306 -2.4374 2.0311 42 1 9.1926 -3.7083 3.8194 43 1 8.9250 -4.9850 5.8982 44 1 8.6645 -1.6452 7.2094 45 1 5.4193 -4.1453 5.7928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169084229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:42 Heat of formation + Delta-G solvation = 46.506537 kcal Electronic energy + Delta-G solvation = -28168.617119 eV Core-core repulsion = 24186.014201 eV Total energy + Delta-G solvation = -3982.602919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47857 -39.73412 -38.72209 -38.05145 -36.91770 -36.53129 -35.09662 -33.55883 -33.34727 -31.98032 -29.25416 -28.78952 -28.49244 -27.33459 -24.88755 -24.06331 -23.04609 -22.69071 -21.75589 -20.63426 -19.25525 -18.86469 -18.49706 -17.67255 -17.36585 -17.22521 -16.66941 -16.23905 -16.10835 -15.67761 -15.33206 -15.18841 -14.92904 -14.59561 -14.47190 -14.35902 -14.17954 -13.94513 -13.87728 -13.61965 -13.39908 -13.34174 -13.29659 -13.15181 -13.10880 -12.90600 -12.70141 -12.65719 -12.61434 -12.41925 -12.31020 -12.17002 -12.04579 -11.62499 -11.53367 -11.19070 -10.49908 -10.37225 -9.68389 -9.35251 -9.16929 -7.98470 -7.12790 0.34323 0.47690 0.90282 1.35947 1.47840 1.53389 2.03859 2.10696 2.15513 2.27909 2.40320 2.61226 2.85474 3.06964 3.08127 3.44673 3.63980 3.88678 3.90369 4.09408 4.12205 4.16428 4.22239 4.31310 4.38943 4.44248 4.50179 4.55471 4.63120 4.67529 4.71389 4.74834 4.75479 4.89917 4.98126 5.01647 5.02983 5.12283 5.21532 5.29364 5.42179 5.52643 5.75578 6.01972 6.06975 6.08173 6.21675 6.45701 6.80301 6.98225 7.16877 7.24281 7.38419 7.71671 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.002667 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.014710 B =10496.910149 C =11095.024104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.561 5.561 3 C 0.018 3.982 4 C 0.061 3.939 5 C -0.103 4.103 6 C 0.078 3.922 7 O -0.319 6.319 8 C 0.234 3.766 9 C -0.141 4.141 10 C -0.111 4.111 11 C 0.170 3.830 12 N -0.653 5.653 13 C 0.376 3.624 14 C -0.373 4.373 15 H 0.104 0.896 16 C 0.052 3.948 17 N -0.709 5.709 18 Si 0.966 3.034 19 H -0.254 1.254 20 H -0.263 1.263 21 H -0.255 1.255 22 C -0.325 4.325 23 C 0.329 3.671 24 N -0.560 5.560 25 C 0.320 3.680 26 N -0.558 5.558 27 C 0.055 3.945 28 N -0.518 5.518 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.026 0.974 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.408 0.592 44 H 0.312 0.688 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.369 16.148 -11.856 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.285 5.285 3 C -0.130 4.130 4 C -0.067 4.067 5 C -0.141 4.141 6 C 0.002 3.998 7 O -0.228 6.228 8 C 0.053 3.947 9 C -0.162 4.162 10 C -0.141 4.141 11 C 0.066 3.934 12 N -0.276 5.276 13 C 0.271 3.729 14 C -0.400 4.400 15 H 0.122 0.878 16 C -0.181 4.181 17 N -0.327 5.327 18 Si 0.786 3.214 19 H -0.179 1.179 20 H -0.187 1.187 21 H -0.179 1.179 22 C -0.345 4.345 23 C 0.022 3.978 24 N -0.243 5.243 25 C 0.014 3.986 26 N -0.242 5.242 27 C -0.105 4.105 28 N -0.240 5.240 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.177 0.823 42 H 0.177 0.823 43 H 0.245 0.755 44 H 0.124 0.876 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.177 14.668 -12.170 20.035 hybrid contribution 0.603 0.830 1.402 1.737 sum -5.574 15.499 -10.768 19.678 Atomic orbital electron populations 1.22433 0.86109 1.02860 1.01078 1.61950 1.08975 1.14692 1.42901 1.22503 1.01290 0.88189 1.00985 1.21937 0.94106 0.98936 0.91690 1.21419 0.94891 1.00552 0.97247 1.22447 0.78253 1.00150 0.98978 1.86119 1.23618 1.70078 1.42974 1.19767 0.90167 0.95961 0.88767 1.20984 0.91379 1.02265 1.01523 1.21065 1.00912 0.99054 0.93047 1.18497 0.92675 0.93155 0.89121 1.41185 1.12461 1.57791 1.16127 1.16649 0.84490 0.88037 0.83694 1.20523 1.13583 0.92955 1.12924 0.87839 1.26852 0.95185 1.01289 0.94728 1.69460 1.13622 1.25682 1.23923 0.85310 0.80289 0.76512 0.79283 1.17851 1.18681 1.17853 1.13049 1.36998 0.88158 0.96253 1.24946 0.90226 0.91331 0.91257 1.81074 1.19228 1.09665 1.14371 1.25127 0.90411 0.91619 0.91463 1.80899 1.18961 1.10587 1.13709 1.22042 0.91703 0.99596 0.97188 1.67087 1.40711 1.13250 1.02948 0.95426 0.90228 0.90993 0.91057 0.90296 0.95505 0.90178 0.94424 0.90751 0.90506 0.92638 0.92847 0.82271 0.82313 0.75478 0.87580 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.57 127.69 1.22 1.52 16 2 N -0.56 -9.30 5.02 -948.88 -4.76 -14.06 16 3 C 0.02 0.26 9.32 127.69 1.19 1.45 16 4 C 0.06 1.08 4.96 86.30 0.43 1.51 16 5 C -0.10 -2.04 5.51 30.59 0.17 -1.87 16 6 C 0.08 1.97 5.31 71.98 0.38 2.35 16 7 O -0.32 -9.49 10.12 -90.92 -0.92 -10.41 16 8 C 0.23 7.60 7.49 84.80 0.63 8.24 16 9 C -0.14 -3.99 10.03 22.45 0.23 -3.76 16 10 C -0.11 -3.22 10.04 22.57 0.23 -2.99 16 11 C 0.17 5.77 5.14 38.23 0.20 5.97 16 12 N -0.65 -22.76 3.29 -179.40 -0.59 -23.35 16 13 C 0.38 14.57 4.94 39.04 0.19 14.76 16 14 C -0.37 -14.21 7.01 23.09 0.16 -14.05 16 15 H 0.10 4.09 7.08 -2.91 -0.02 4.07 16 16 C 0.05 1.79 4.82 85.55 0.41 2.20 16 17 N -0.71 -23.86 10.94 21.98 0.24 -23.62 16 18 Si 0.97 28.49 29.58 68.60 2.03 30.52 16 19 H -0.25 -7.40 7.11 99.48 0.71 -6.69 16 20 H -0.26 -7.56 7.11 99.48 0.71 -6.85 16 21 H -0.26 -7.87 7.11 99.48 0.71 -7.17 16 22 C -0.33 -13.72 5.88 -20.07 -0.12 -13.84 16 23 C 0.33 14.75 13.94 88.33 1.23 15.98 16 24 N -0.56 -26.30 18.54 19.01 0.35 -25.94 16 25 C 0.32 14.09 14.81 88.37 1.31 15.39 16 26 N -0.56 -25.71 18.51 18.96 0.35 -25.36 16 27 C 0.05 2.00 9.80 84.79 0.83 2.83 16 28 N -0.52 -18.44 9.20 -308.39 -2.84 -21.28 16 29 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 31 H 0.07 0.89 8.12 -2.39 -0.02 0.88 16 32 H 0.07 1.01 6.47 -2.39 -0.02 0.99 16 33 H 0.08 0.90 8.12 -2.39 -0.02 0.88 16 34 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.08 1.38 8.06 -2.38 -0.02 1.36 16 36 H 0.04 0.66 8.12 -2.39 -0.02 0.64 16 37 H 0.07 1.41 6.55 -2.38 -0.02 1.40 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 40 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 41 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.41 13.35 8.85 -92.71 -0.82 12.53 16 44 H 0.31 9.45 8.29 -92.71 -0.77 8.68 16 45 H 0.15 5.78 6.27 -2.91 -0.02 5.77 16 Total: -1.00 -50.93 395.92 2.78 -48.15 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.22 Total: 29.65 kcal Atomic # 6 Polarization: 27.01 SS G_CDS: 8.70 Total: 35.71 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -7.25 Total: -133.61 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.92 Total: -10.41 kcal Atomic # 14 Polarization: 28.49 SS G_CDS: 2.03 Total: 30.52 kcal Total: -50.93 2.78 -48.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.652 kcal (2) G-P(sol) polarization free energy of solvation -50.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds