Wall clock time and date at job start Sat Apr 11 2020 06:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42910 * 114.00228 * 2 1 4 4 C 1.50691 * 109.47206 * 179.97438 * 3 2 1 5 5 N 1.28654 * 124.71817 * 90.00227 * 4 3 2 6 6 C 1.33565 * 115.76583 * 179.97438 * 5 4 3 7 7 C 1.47263 * 123.14303 * 179.97438 * 6 5 4 8 8 O 1.21633 * 120.00132 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99630 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72408 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47000 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47510 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47271 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.46959 * 179.97438 * 15 14 13 17 17 C 1.36936 * 119.99757 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00471 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99709 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00319 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47191 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47162 * 120.00295 * 21 19 17 24 24 H 1.48498 * 109.47283 * 240.00167 * 21 19 17 25 25 C 1.35210 * 113.71326 * 0.24655 * 6 5 4 26 26 S 1.70770 * 124.72324 * 270.00138 * 4 3 2 27 27 H 1.08993 * 109.46891 * 300.00200 * 1 2 3 28 28 H 1.09002 * 109.46995 * 60.00133 * 1 2 3 29 29 H 1.09000 * 109.46803 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46714 * 59.99630 * 3 2 1 31 31 H 1.08995 * 109.46849 * 300.00258 * 3 2 1 32 32 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 33 33 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 34 34 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 35 35 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 36 36 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 37 37 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 38 38 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 39 39 H 1.09008 * 109.47165 * 300.00083 * 13 12 11 40 40 H 1.08998 * 109.47285 * 60.00156 * 13 12 11 41 41 H 1.09000 * 109.46793 * 300.00282 * 14 13 12 42 42 H 1.08998 * 109.47049 * 59.99608 * 14 13 12 43 43 H 1.08994 * 109.47190 * 299.99512 * 15 14 13 44 44 H 1.08998 * 109.47408 * 59.99824 * 15 14 13 45 45 H 0.97000 * 120.00380 * 0.02562 * 16 15 14 46 46 H 0.96996 * 120.00448 * 179.97438 * 20 19 17 47 47 H 1.08007 * 125.58170 * 179.75441 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2434 1.1285 -1.0565 6 6 5.5586 1.0248 -0.8481 7 6 6.5432 0.9462 -1.9405 8 8 7.7287 0.8524 -1.6851 9 7 6.1305 0.9783 -3.2231 10 6 7.1104 0.9062 -4.3098 11 6 6.3851 0.9687 -5.6555 12 6 7.4085 0.8940 -6.7904 13 6 6.6833 0.9572 -8.1361 14 6 7.7066 0.8819 -9.2711 15 6 6.9814 0.9457 -10.6167 16 7 7.9614 0.8742 -11.7034 17 6 7.5426 0.9132 -13.0065 18 1 6.4900 0.9962 -13.2333 19 6 8.4712 0.8460 -14.0362 20 7 9.7540 0.7443 -13.7600 21 14 7.9000 0.8984 -15.8140 22 1 6.4201 1.0138 -15.8552 23 1 8.5066 2.0706 -16.4945 24 1 8.3192 -0.3470 -16.5056 25 6 5.9011 0.9930 0.4595 26 16 4.4816 1.1099 1.4046 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 5.1851 1.0535 -3.4268 33 1 7.8028 1.7444 -4.2310 34 1 7.6638 -0.0301 -4.2385 35 1 5.6928 0.1305 -5.7343 36 1 5.8317 1.9051 -5.7269 37 1 8.1005 1.7324 -6.7114 38 1 7.9623 -0.0422 -6.7193 39 1 5.9910 0.1189 -8.2155 40 1 6.1299 1.8935 -8.2070 41 1 8.3993 1.7198 -9.1919 42 1 8.2598 -0.0546 -9.2000 43 1 6.2886 0.1080 -10.6961 44 1 6.4286 1.8824 -10.6875 45 1 8.9067 0.7985 -11.4998 46 1 10.4029 0.6970 -14.4794 47 1 6.9070 0.9090 0.8438 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180444923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:47 Heat of formation + Delta-G solvation = -48.554169 kcal Electronic energy + Delta-G solvation = -25035.524103 eV Core-core repulsion = 21151.950243 eV Total energy + Delta-G solvation = -3883.573860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.97065 -39.27033 -38.28618 -36.79951 -35.40235 -33.92359 -32.27025 -31.81718 -30.00423 -28.78651 -27.39853 -26.59525 -25.33061 -23.78146 -22.31400 -21.82164 -21.10604 -20.61879 -20.25380 -19.16586 -17.25969 -17.12673 -16.93452 -16.54317 -16.33660 -16.27215 -15.80996 -15.54901 -14.79289 -14.70557 -14.58317 -14.14915 -13.96368 -13.45583 -13.37901 -13.33487 -12.89374 -12.88577 -12.71174 -12.49194 -12.31227 -12.10492 -11.68950 -11.32335 -11.17686 -10.89448 -10.71171 -10.70798 -10.57061 -10.52887 -10.38953 -10.29172 -10.24984 -10.22014 -9.91417 -9.62225 -9.61763 -9.29921 -8.82364 -6.85927 -5.71665 -2.99903 -0.09813 0.60830 1.01605 1.38120 2.78934 2.91384 3.09440 3.46377 3.51542 3.54200 3.61631 4.16784 4.44553 4.57594 4.60363 4.63288 4.68135 4.72325 4.74996 4.79999 4.80901 5.01028 5.10172 5.26246 5.27008 5.42641 5.44262 5.59006 5.67466 5.74396 5.77360 5.98065 6.00645 6.12601 6.18124 6.34855 6.38377 6.38550 6.45204 6.52876 6.77554 6.95657 6.99667 7.21753 7.74959 7.83152 8.47741 9.58422 10.18406 10.52936 11.51584 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.001281 C = 0.001208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.372723 B =21847.705669 C =23176.185757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.140 3.860 4 C 0.016 3.984 5 N -0.425 5.425 6 C 0.008 3.992 7 C 0.593 3.407 8 O -0.534 6.534 9 N -0.711 5.711 10 C 0.116 3.884 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.113 4.113 14 C -0.127 4.127 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.221 4.221 26 S 0.243 5.757 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.410 0.590 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.932 1.782 39.111 43.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.060 3.940 4 C -0.264 4.264 5 N -0.142 5.142 6 C -0.127 4.127 7 C 0.376 3.624 8 O -0.411 6.411 9 N -0.362 5.362 10 C -0.007 4.007 11 C -0.169 4.169 12 C -0.154 4.154 13 C -0.151 4.151 14 C -0.164 4.164 15 C 0.024 3.976 16 N -0.379 5.379 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.364 4.364 26 S 0.500 5.500 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.246 0.754 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -17.561 1.592 39.646 43.391 hybrid contribution 0.109 0.168 -1.837 1.848 sum -17.452 1.759 37.809 41.680 Atomic orbital electron populations 1.22832 0.79646 1.03550 1.00489 1.87962 1.20572 1.26117 1.95553 1.20781 0.84097 0.86277 1.02810 1.26592 1.00823 1.06801 0.92156 1.66858 1.03076 1.12785 1.31509 1.20416 0.89912 1.08774 0.93618 1.17022 0.86588 0.76824 0.81976 1.90840 1.16140 1.50267 1.83830 1.45863 1.11785 1.73421 1.05089 1.21533 0.91342 1.02753 0.85045 1.21831 0.99137 1.02913 0.93001 1.21516 0.97686 1.02618 0.93558 1.21501 0.98346 1.01903 0.93395 1.21728 0.98203 1.01973 0.94541 1.20658 0.92521 0.97503 0.86885 1.42407 1.05280 1.88916 1.01334 1.19313 0.92583 1.41939 0.83104 0.91159 1.24751 0.95314 1.03175 0.97969 1.69671 0.99882 1.57742 1.31051 0.86108 0.77622 0.77174 0.85265 1.20573 1.21886 1.21878 1.26747 1.06490 1.06153 0.96962 1.82878 0.94323 1.62298 1.10524 0.93593 0.93381 0.88965 0.90619 0.89724 0.75435 0.91058 0.91049 0.91158 0.91194 0.91602 0.91588 0.92082 0.92089 0.92094 0.92084 0.96579 0.96583 0.78337 0.93608 0.78965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 11.01 101.05 1.11 1.21 16 2 O -0.38 -2.51 10.69 -35.23 -0.38 -2.89 16 3 C 0.14 0.68 6.51 36.00 0.23 0.91 16 4 C 0.02 0.11 6.97 -13.61 -0.09 0.01 16 5 N -0.42 -3.92 10.12 -8.51 -0.09 -4.01 16 6 C 0.01 0.08 6.70 -84.52 -0.57 -0.48 16 7 C 0.59 6.95 7.80 -12.59 -0.10 6.85 16 8 O -0.53 -7.74 16.71 5.25 0.09 -7.66 16 9 N -0.71 -7.07 5.55 -61.43 -0.34 -7.41 16 10 C 0.12 1.14 5.67 -4.04 -0.02 1.11 16 11 C -0.13 -1.16 5.33 -26.73 -0.14 -1.31 16 12 C -0.12 -1.23 5.21 -26.73 -0.14 -1.37 16 13 C -0.11 -1.45 5.21 -26.73 -0.14 -1.59 16 14 C -0.13 -2.11 5.33 -26.73 -0.14 -2.25 16 15 C 0.15 3.21 6.26 -4.04 -0.03 3.18 16 16 N -0.74 -19.66 5.60 -59.92 -0.34 -19.99 16 17 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 18 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 20 N -0.93 -29.13 13.06 55.49 0.72 -28.40 16 21 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 C -0.22 -1.70 10.62 29.65 0.31 -1.39 16 26 S 0.24 1.25 22.92 -107.50 -2.46 -1.22 16 27 H 0.05 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.05 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.41 3.53 7.99 -40.82 -0.33 3.20 16 33 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.38 10.69 7.67 -40.82 -0.31 10.38 16 46 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.19 1.27 8.03 -52.48 -0.42 0.85 16 LS Contribution 411.88 15.07 6.21 6.21 Total: -1.00 -35.90 411.88 -9.36 -45.26 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.79 Total: 4.96 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.04 Total: -59.81 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.29 Total: -10.54 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.46 Total: -1.22 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.90 -9.36 -45.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180444923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.294 kcal (2) G-P(sol) polarization free energy of solvation -35.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds