Wall clock time and date at job start Sat Apr 11 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.45748 * 117.94775 * 2 1 4 4 C 1.52924 * 110.48822 * 160.92682 * 3 2 1 5 5 C 1.53345 * 108.67385 * 50.75489 * 4 3 2 6 6 C 1.53069 * 108.45474 * 292.45047 * 5 4 3 7 7 H 1.08994 * 109.40577 * 288.79250 * 6 5 4 8 8 N 1.46900 * 109.40225 * 169.04333 * 6 5 4 9 9 C 1.46897 * 110.99929 * 154.99861 * 8 6 5 10 10 H 1.08997 * 110.64662 * 325.70598 * 9 8 6 11 11 C 1.55161 * 110.72091 * 202.55968 * 9 8 6 12 12 C 1.54910 * 101.58214 * 206.13764 * 11 9 8 13 13 N 1.47422 * 104.83079 * 37.01243 * 12 11 9 14 14 C 1.34779 * 125.64440 * 155.83108 * 13 12 11 15 15 O 1.21277 * 119.99721 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00267 * 0.03065 * 14 13 12 17 17 S 1.80996 * 109.47150 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00181 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99932 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00459 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00033 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 119.99648 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47286 * 89.99729 * 22 20 18 24 24 H 1.48501 * 109.47163 * 210.00025 * 22 20 18 25 25 H 1.48505 * 109.47062 * 329.99705 * 22 20 18 26 26 C 1.47319 * 108.73662 * 335.71394 * 13 12 11 27 27 C 1.33356 * 117.94373 * 180.02562 * 2 1 3 28 28 O 1.21280 * 118.25062 * 2.24954 * 27 2 1 29 29 H 1.09000 * 109.47555 * 89.99546 * 1 2 3 30 30 H 1.09004 * 109.47144 * 209.99609 * 1 2 3 31 31 H 1.09004 * 109.47097 * 329.99422 * 1 2 3 32 32 H 1.08998 * 109.30032 * 40.61794 * 3 2 1 33 33 H 1.09000 * 109.14082 * 281.13076 * 3 2 1 34 34 H 1.09001 * 109.60061 * 291.00283 * 4 3 2 35 35 H 1.08998 * 109.74031 * 170.59244 * 4 3 2 36 36 H 1.09002 * 109.67371 * 52.20511 * 5 4 3 37 37 H 1.09004 * 109.67368 * 172.70258 * 5 4 3 38 38 H 1.00896 * 111.00419 * 278.96005 * 8 6 5 39 39 H 1.08998 * 111.00311 * 324.21499 * 11 9 8 40 40 H 1.09009 * 111.00160 * 88.02835 * 11 9 8 41 41 H 1.09000 * 110.36377 * 155.85328 * 12 11 9 42 42 H 1.09003 * 110.36636 * 278.05910 * 12 11 9 43 43 H 1.09003 * 109.46961 * 299.99665 * 16 14 13 44 44 H 1.08999 * 109.47435 * 59.99623 * 16 14 13 45 45 H 0.96996 * 119.99147 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.06152 * 241.86918 * 26 13 12 47 47 H 1.08999 * 109.84938 * 120.61407 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5949 1.1258 0.4681 5 6 4.2492 -0.0014 -0.3398 6 6 3.5846 -1.3245 0.0483 7 1 3.8888 -1.6002 1.0579 8 7 4.0036 -2.3746 -0.8897 9 6 3.9072 -3.7030 -0.2700 10 1 4.1444 -3.6495 0.7926 11 6 4.8386 -4.7136 -0.9901 12 6 4.1240 -6.0569 -0.6993 13 7 2.6855 -5.7409 -0.7645 14 6 1.6995 -6.6201 -1.0319 15 8 0.5459 -6.2472 -1.0604 16 6 2.0306 -8.0665 -1.2953 17 16 0.5051 -8.9853 -1.6187 18 6 1.1687 -10.5955 -1.8862 19 1 2.2346 -10.7576 -1.8232 20 6 0.3214 -11.6559 -2.1770 21 7 0.8173 -12.8587 -2.3773 22 14 -1.5222 -11.3756 -2.2853 23 1 -1.8883 -11.0243 -3.6809 24 1 -2.2356 -12.6144 -1.8832 25 1 -1.9083 -10.2653 -1.3778 26 6 2.5032 -4.3058 -0.4863 27 6 2.0899 -1.1781 -0.0005 28 8 1.4158 -2.1854 -0.0429 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6271 1.9717 0.6697 33 1 2.1399 1.6964 -1.0104 34 1 3.6101 0.8724 1.5281 35 1 4.1402 2.0557 0.3065 36 1 4.1087 0.1814 -1.4051 37 1 5.3144 -0.0453 -0.1124 38 1 3.4659 -2.3335 -1.7424 39 1 4.8766 -4.5151 -2.0612 40 1 5.8387 -4.7006 -0.5567 41 1 4.3846 -6.7968 -1.4561 42 1 4.3896 -6.4208 0.2932 43 1 2.6881 -8.1367 -2.1619 44 1 2.5312 -8.4891 -0.4242 45 1 0.2251 -13.5996 -2.5801 46 1 1.9001 -4.1727 0.4118 47 1 2.0192 -3.8228 -1.3352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181106439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:54 Heat of formation + Delta-G solvation = -53.182995 kcal Electronic energy + Delta-G solvation = -27846.223708 eV Core-core repulsion = 23962.449127 eV Total energy + Delta-G solvation = -3883.774581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17820 -39.63785 -37.61128 -36.92321 -35.62839 -33.08633 -32.38490 -30.94804 -29.56594 -29.00627 -27.48437 -26.73383 -25.54359 -24.05213 -22.96946 -22.73584 -21.09616 -19.36605 -19.16095 -17.61938 -17.47786 -16.87270 -16.58417 -16.47461 -16.05974 -15.36693 -15.02944 -14.97873 -14.85555 -14.51122 -14.04977 -13.96660 -13.83448 -13.58789 -13.24249 -12.98343 -12.78125 -12.70730 -12.69335 -12.34148 -12.30728 -12.22384 -11.98231 -11.72492 -11.63112 -11.50690 -11.26441 -11.20297 -10.96461 -10.86102 -10.52567 -10.09312 -9.80329 -9.38543 -9.14824 -8.94941 -8.88157 -8.41885 -8.34483 -6.84999 -6.23858 -3.94560 2.21426 2.57274 2.81232 3.13051 3.29257 3.37929 3.56122 3.59465 3.74040 4.01706 4.16446 4.24679 4.37039 4.38685 4.49388 4.52165 4.72634 4.81745 4.86404 4.93263 4.96571 4.99117 5.13489 5.15172 5.20294 5.21971 5.25505 5.27079 5.35206 5.48401 5.54747 5.59278 5.63451 5.73776 5.81088 5.87121 5.93501 5.98455 6.10616 6.23945 6.52035 6.56513 6.79223 7.02932 7.76958 7.81973 7.99479 8.46796 8.63179 9.22700 10.85375 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.002316 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.298664 B =12088.979290 C =13190.335237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.605 5.605 3 C 0.112 3.888 4 C -0.137 4.137 5 C -0.110 4.110 6 C 0.076 3.924 7 H 0.110 0.890 8 N -0.648 5.648 9 C 0.075 3.925 10 H 0.092 0.908 11 C -0.119 4.119 12 C 0.097 3.903 13 N -0.628 5.628 14 C 0.544 3.456 15 O -0.517 6.517 16 C -0.116 4.116 17 S -0.144 6.144 18 C -0.519 4.519 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 C 0.106 3.894 27 C 0.475 3.525 28 O -0.532 6.532 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.349 0.651 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.270 0.730 46 H 0.077 0.923 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.034 33.087 6.547 35.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.339 5.339 3 C -0.011 4.011 4 C -0.175 4.175 5 C -0.148 4.148 6 C -0.038 4.038 7 H 0.128 0.872 8 N -0.278 5.278 9 C -0.035 4.035 10 H 0.110 0.890 11 C -0.157 4.157 12 C -0.027 4.027 13 N -0.366 5.366 14 C 0.332 3.668 15 O -0.392 6.392 16 C -0.267 4.267 17 S 0.082 5.918 18 C -0.666 4.666 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.518 5.518 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.018 4.018 27 C 0.261 3.739 28 O -0.408 6.408 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.169 0.831 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.558 32.931 6.556 34.912 hybrid contribution -0.407 -0.611 -0.084 0.739 sum 9.151 32.320 6.472 34.209 Atomic orbital electron populations 1.21737 0.79442 1.03299 1.02253 1.47354 1.07531 1.06096 1.72952 1.21466 0.93353 0.84581 1.01746 1.21905 0.94578 1.00188 1.00842 1.21645 1.00782 0.91553 1.00854 1.21757 0.88616 0.94179 0.99201 0.87245 1.60958 1.58228 1.02155 1.06459 1.22758 0.94193 0.87820 0.98778 0.89028 1.22777 0.98425 0.92757 1.01770 1.22345 0.80638 0.97739 1.01971 1.48647 1.06610 1.09384 1.71951 1.19949 0.84236 0.86686 0.75972 1.90706 1.19221 1.79188 1.50066 1.23253 1.04639 0.93723 1.05066 1.84796 1.08084 1.06090 1.92805 1.22324 0.97453 0.91535 1.55334 0.89411 1.24711 0.99257 0.94051 0.93337 1.69944 1.35974 0.99841 1.46060 0.86730 0.84962 0.79598 0.80558 1.19235 1.19984 1.15904 1.22782 0.96611 0.79998 1.02428 1.21462 0.92413 0.83140 0.76846 1.90863 1.66267 1.34694 1.48963 0.92557 0.90052 0.91372 0.90594 0.91596 0.90850 0.89281 0.90798 0.89730 0.83082 0.90131 0.89543 0.90138 0.91330 0.88718 0.88672 0.92007 0.90502 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.22 59.85 0.61 1.19 16 2 N -0.61 -4.58 3.21 -182.82 -0.59 -5.17 16 3 C 0.11 0.45 6.39 -4.49 -0.03 0.42 16 4 C -0.14 -0.40 6.02 -26.59 -0.16 -0.56 16 5 C -0.11 -0.48 5.63 -26.52 -0.15 -0.63 16 6 C 0.08 0.54 2.74 -69.04 -0.19 0.35 16 7 H 0.11 0.73 7.45 -51.93 -0.39 0.35 16 8 N -0.65 -5.37 6.11 -99.22 -0.61 -5.98 16 9 C 0.08 0.74 3.19 -65.88 -0.21 0.53 16 10 H 0.09 0.83 7.48 -51.93 -0.39 0.44 16 11 C -0.12 -1.06 6.77 -24.58 -0.17 -1.23 16 12 C 0.10 1.12 6.69 -2.53 -0.02 1.11 16 13 N -0.63 -10.08 3.33 -170.28 -0.57 -10.65 16 14 C 0.54 11.29 7.87 -10.99 -0.09 11.20 16 15 O -0.52 -12.87 16.19 5.56 0.09 -12.78 16 16 C -0.12 -2.48 5.16 36.00 0.19 -2.29 16 17 S -0.14 -3.88 18.55 -107.50 -1.99 -5.88 16 18 C -0.52 -15.47 10.04 30.94 0.31 -15.16 16 19 H 0.09 2.71 8.03 -52.48 -0.42 2.29 16 20 C 0.09 2.86 5.50 -17.43 -0.10 2.76 16 21 N -0.88 -27.19 13.97 55.49 0.78 -26.42 16 22 Si 0.86 22.54 27.74 -169.99 -4.71 17.82 16 23 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.24 -6.22 6.74 56.52 0.38 -5.84 16 26 C 0.11 1.53 4.50 -2.90 -0.01 1.52 16 27 C 0.48 4.63 6.94 -11.83 -0.08 4.55 16 28 O -0.53 -7.46 10.95 5.56 0.06 -7.40 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.82 7.21 -51.93 -0.37 0.44 16 31 H 0.07 0.34 7.86 -51.93 -0.41 -0.07 16 32 H 0.08 0.20 7.92 -51.93 -0.41 -0.21 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.23 8.12 -51.93 -0.42 -0.19 16 35 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.07 0.36 8.13 -51.93 -0.42 -0.07 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.35 3.27 7.84 -39.29 -0.31 2.96 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.08 0.92 7.48 -51.93 -0.39 0.53 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.88 7.85 -51.92 -0.41 1.47 16 44 H 0.09 1.90 8.14 -51.92 -0.42 1.48 16 45 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 46 H 0.08 1.31 6.88 -51.93 -0.36 0.95 16 47 H 0.07 1.13 6.57 -51.93 -0.34 0.79 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -37.62 380.93 -9.47 -47.09 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.57 Total: -0.13 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.09 Total: 3.74 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.99 Total: -48.21 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.15 Total: -20.18 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.82 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -1.99 Total: -5.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.62 -9.47 -47.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.094 kcal (2) G-P(sol) polarization free energy of solvation -37.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds