Wall clock time and date at job start Sat Apr 11 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.45748 * 117.94775 * 2 1 4 4 C 1.52924 * 110.48822 * 160.92682 * 3 2 1 5 5 C 1.53345 * 108.67385 * 50.75489 * 4 3 2 6 6 C 1.53069 * 108.45474 * 292.45047 * 5 4 3 7 7 H 1.08994 * 109.40577 * 288.79250 * 6 5 4 8 8 N 1.46900 * 109.40225 * 169.04333 * 6 5 4 9 9 C 1.46897 * 110.99929 * 154.99861 * 8 6 5 10 10 H 1.08997 * 110.64662 * 325.70598 * 9 8 6 11 11 C 1.55161 * 110.72091 * 202.55968 * 9 8 6 12 12 C 1.54910 * 101.58214 * 206.13764 * 11 9 8 13 13 N 1.47422 * 104.83079 * 37.01243 * 12 11 9 14 14 C 1.34779 * 125.64440 * 155.83108 * 13 12 11 15 15 O 1.21277 * 119.99721 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00267 * 0.03065 * 14 13 12 17 17 S 1.80996 * 109.47150 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00181 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99932 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00459 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00033 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 119.99648 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47286 * 89.99729 * 22 20 18 24 24 H 1.48501 * 109.47163 * 210.00025 * 22 20 18 25 25 H 1.48505 * 109.47062 * 329.99705 * 22 20 18 26 26 C 1.47319 * 108.73662 * 335.71394 * 13 12 11 27 27 C 1.33356 * 117.94373 * 180.02562 * 2 1 3 28 28 O 1.21280 * 118.25062 * 2.24954 * 27 2 1 29 29 H 1.09000 * 109.47555 * 89.99546 * 1 2 3 30 30 H 1.09004 * 109.47144 * 209.99609 * 1 2 3 31 31 H 1.09004 * 109.47097 * 329.99422 * 1 2 3 32 32 H 1.08998 * 109.30032 * 40.61794 * 3 2 1 33 33 H 1.09000 * 109.14082 * 281.13076 * 3 2 1 34 34 H 1.09001 * 109.60061 * 291.00283 * 4 3 2 35 35 H 1.08998 * 109.74031 * 170.59244 * 4 3 2 36 36 H 1.09002 * 109.67371 * 52.20511 * 5 4 3 37 37 H 1.09004 * 109.67368 * 172.70258 * 5 4 3 38 38 H 1.00896 * 111.00419 * 278.96005 * 8 6 5 39 39 H 1.08998 * 111.00311 * 324.21499 * 11 9 8 40 40 H 1.09009 * 111.00160 * 88.02835 * 11 9 8 41 41 H 1.09000 * 110.36377 * 155.85328 * 12 11 9 42 42 H 1.09003 * 110.36636 * 278.05910 * 12 11 9 43 43 H 1.09003 * 109.46961 * 299.99665 * 16 14 13 44 44 H 1.08999 * 109.47435 * 59.99623 * 16 14 13 45 45 H 0.96996 * 119.99147 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.06152 * 241.86918 * 26 13 12 47 47 H 1.08999 * 109.84938 * 120.61407 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5949 1.1258 0.4681 5 6 4.2492 -0.0014 -0.3398 6 6 3.5846 -1.3245 0.0483 7 1 3.8888 -1.6002 1.0579 8 7 4.0036 -2.3746 -0.8897 9 6 3.9072 -3.7030 -0.2700 10 1 4.1444 -3.6495 0.7926 11 6 4.8386 -4.7136 -0.9901 12 6 4.1240 -6.0569 -0.6993 13 7 2.6855 -5.7409 -0.7645 14 6 1.6995 -6.6201 -1.0319 15 8 0.5459 -6.2472 -1.0604 16 6 2.0306 -8.0665 -1.2953 17 16 0.5051 -8.9853 -1.6187 18 6 1.1687 -10.5955 -1.8862 19 1 2.2346 -10.7576 -1.8232 20 6 0.3214 -11.6559 -2.1770 21 7 0.8173 -12.8587 -2.3773 22 14 -1.5222 -11.3756 -2.2853 23 1 -1.8883 -11.0243 -3.6809 24 1 -2.2356 -12.6144 -1.8832 25 1 -1.9083 -10.2653 -1.3778 26 6 2.5032 -4.3058 -0.4863 27 6 2.0899 -1.1781 -0.0005 28 8 1.4158 -2.1854 -0.0429 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6271 1.9717 0.6697 33 1 2.1399 1.6964 -1.0104 34 1 3.6101 0.8724 1.5281 35 1 4.1402 2.0557 0.3065 36 1 4.1087 0.1814 -1.4051 37 1 5.3144 -0.0453 -0.1124 38 1 3.4659 -2.3335 -1.7424 39 1 4.8766 -4.5151 -2.0612 40 1 5.8387 -4.7006 -0.5567 41 1 4.3846 -6.7968 -1.4561 42 1 4.3896 -6.4208 0.2932 43 1 2.6881 -8.1367 -2.1619 44 1 2.5312 -8.4891 -0.4242 45 1 0.2251 -13.5996 -2.5801 46 1 1.9001 -4.1727 0.4118 47 1 2.0192 -3.8228 -1.3352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181106439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:54 Heat of formation + Delta-G solvation = -81.777576 kcal Electronic energy + Delta-G solvation = -27847.463662 eV Core-core repulsion = 23962.449127 eV Total energy + Delta-G solvation = -3885.014535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.88113 -40.93682 -38.84014 -37.55743 -36.48759 -34.69964 -33.85488 -32.02977 -30.84561 -29.89475 -28.07062 -27.96500 -27.57873 -24.83731 -23.86547 -23.20552 -21.93719 -20.81963 -19.87094 -19.52601 -18.27439 -18.05352 -17.52681 -17.35142 -17.16132 -16.89034 -16.57473 -16.11411 -15.77014 -15.66152 -15.19882 -15.12284 -14.92851 -14.51768 -14.39185 -14.27017 -13.83084 -13.66418 -13.61084 -13.39102 -13.31169 -13.20026 -13.04269 -12.93156 -12.85468 -12.74777 -12.68844 -12.05643 -11.97316 -11.90281 -11.84010 -11.57040 -11.19861 -11.05986 -10.85922 -10.57134 -9.82109 -9.75922 -9.57038 -9.05041 -8.54155 -6.25755 0.92399 1.28179 1.42478 1.46662 1.50497 1.52263 1.98486 2.07622 2.22894 2.65197 2.83621 2.94388 3.43264 3.50248 3.63045 3.76812 3.87130 3.94719 4.05526 4.06884 4.14022 4.28049 4.33164 4.35596 4.38201 4.41199 4.49831 4.58137 4.66013 4.70332 4.75488 4.86087 4.89278 4.94431 5.07248 5.10996 5.16745 5.19204 5.30577 5.35186 5.45412 5.68728 5.81915 6.01407 6.08572 6.37038 6.41464 6.90900 7.03060 7.13696 8.58167 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.002316 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.298664 B =12088.979290 C =13190.335237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.603 5.603 3 C 0.103 3.897 4 C -0.131 4.131 5 C -0.103 4.103 6 C 0.077 3.923 7 H 0.118 0.882 8 N -0.636 5.636 9 C 0.087 3.913 10 H 0.107 0.893 11 C -0.104 4.104 12 C 0.084 3.916 13 N -0.620 5.620 14 C 0.540 3.460 15 O -0.571 6.571 16 C -0.098 4.098 17 S -0.182 6.182 18 C -0.526 4.526 19 H 0.065 0.935 20 C 0.048 3.952 21 N -0.914 5.914 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.255 1.255 25 H -0.242 1.242 26 C 0.113 3.887 27 C 0.465 3.535 28 O -0.586 6.586 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.343 0.657 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.278 0.722 46 H 0.047 0.953 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.280 35.789 7.123 38.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.336 5.336 3 C -0.018 4.018 4 C -0.169 4.169 5 C -0.141 4.141 6 C -0.036 4.036 7 H 0.135 0.865 8 N -0.264 5.264 9 C -0.024 4.024 10 H 0.125 0.875 11 C -0.142 4.142 12 C -0.038 4.038 13 N -0.355 5.355 14 C 0.327 3.673 15 O -0.451 6.451 16 C -0.248 4.248 17 S 0.045 5.955 18 C -0.674 4.674 19 H 0.083 0.917 20 C -0.158 4.158 21 N -0.551 5.551 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.179 1.179 25 H -0.166 1.166 26 C -0.011 4.011 27 C 0.252 3.748 28 O -0.467 6.467 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.162 0.838 39 H 0.099 0.901 40 H 0.140 0.860 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.884 35.697 7.142 38.295 hybrid contribution -1.002 -1.299 -0.229 1.656 sum 10.883 34.398 6.912 36.734 Atomic orbital electron populations 1.21723 0.79990 1.03236 1.01880 1.47541 1.07576 1.07010 1.71426 1.21788 0.94159 0.82898 1.02982 1.21923 0.93669 1.00746 1.00513 1.21634 1.01355 0.90156 1.00920 1.21938 0.86871 0.95347 0.99438 0.86458 1.61082 1.57444 1.01599 1.06296 1.22746 0.90975 0.88628 1.00023 0.87520 1.22773 0.99287 0.90190 1.01953 1.22775 0.77767 0.99797 1.03431 1.48694 1.07935 1.09521 1.69355 1.19828 0.84366 0.86901 0.76160 1.90680 1.21488 1.79926 1.52967 1.23182 1.01651 0.93525 1.06476 1.84798 1.12259 1.05371 1.93076 1.22409 0.96550 0.93159 1.55270 0.91711 1.25521 1.03402 0.93881 0.93009 1.70007 1.37724 1.00651 1.46758 0.85892 0.80110 0.79932 0.80586 1.18674 1.17908 1.16592 1.22815 0.99429 0.78931 0.99913 1.22054 0.93563 0.83023 0.76137 1.90856 1.67540 1.36623 1.51638 0.93142 0.93246 0.88195 0.88682 0.90647 0.90702 0.86625 0.91085 0.88251 0.83805 0.90139 0.86048 0.89529 0.89376 0.86981 0.87016 0.91270 0.93452 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 10.22 127.77 1.31 2.48 16 2 N -0.60 -8.76 3.21 -851.50 -2.73 -11.49 16 3 C 0.10 0.56 6.39 86.50 0.55 1.11 16 4 C -0.13 -0.32 6.02 30.68 0.18 -0.13 16 5 C -0.10 -0.59 5.63 30.73 0.17 -0.42 16 6 C 0.08 0.97 2.74 44.06 0.12 1.09 16 7 H 0.12 1.31 7.45 -2.39 -0.02 1.30 16 8 N -0.64 -9.50 6.11 -467.83 -2.86 -12.36 16 9 C 0.09 1.57 3.19 46.11 0.15 1.72 16 10 H 0.11 1.66 7.48 -2.39 -0.02 1.64 16 11 C -0.10 -1.54 6.77 31.99 0.22 -1.32 16 12 C 0.08 1.77 6.69 86.86 0.58 2.35 16 13 N -0.62 -19.86 3.33 -811.05 -2.70 -22.56 16 14 C 0.54 22.84 7.87 87.66 0.69 23.53 16 15 O -0.57 -29.69 16.19 -3.02 -0.05 -29.74 16 16 C -0.10 -4.17 5.16 71.24 0.37 -3.80 16 17 S -0.18 -9.93 18.55 -56.49 -1.05 -10.98 16 18 C -0.53 -31.89 10.04 67.96 0.68 -31.21 16 19 H 0.06 4.10 8.03 -2.91 -0.02 4.07 16 20 C 0.05 2.88 5.50 84.86 0.47 3.35 16 21 N -0.91 -56.75 13.97 21.65 0.30 -56.45 16 22 Si 0.91 46.87 27.74 68.60 1.90 48.77 16 23 H -0.26 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.24 -12.61 6.74 99.48 0.67 -11.94 16 26 C 0.11 3.37 4.50 86.67 0.39 3.76 16 27 C 0.46 9.13 6.94 87.74 0.61 9.74 16 28 O -0.59 -17.65 10.95 -3.03 -0.03 -17.68 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 1.10 7.21 -2.38 -0.02 1.08 16 31 H 0.10 0.87 7.86 -2.39 -0.02 0.85 16 32 H 0.09 0.20 7.92 -2.39 -0.02 0.18 16 33 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.07 0.21 8.12 -2.39 -0.02 0.19 16 35 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.07 0.49 8.13 -2.39 -0.02 0.47 16 37 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 38 H 0.34 6.22 7.84 -89.70 -0.70 5.51 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.09 1.75 7.48 -2.39 -0.02 1.74 16 42 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.11 4.39 7.85 -2.39 -0.02 4.37 16 44 H 0.11 4.39 8.14 -2.40 -0.02 4.37 16 45 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 46 H 0.05 1.71 6.88 -2.39 -0.02 1.69 16 47 H 0.04 1.50 6.57 -2.39 -0.02 1.49 16 Total: -1.00 -86.39 380.93 -0.50 -86.89 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.23 Total: 13.34 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 6.49 Total: 12.25 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -7.99 Total: -102.85 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -0.08 Total: -47.42 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.90 Total: 48.77 kcal Atomic # 16 Polarization: -9.93 SS G_CDS: -1.05 Total: -10.98 kcal Total: -86.39 -0.50 -86.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.108 kcal (2) G-P(sol) polarization free energy of solvation -86.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds