Wall clock time and date at job start Sat Apr 11 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81400 * 102.99471 * 2 1 4 4 C 1.53000 * 109.46833 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47181 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00283 * 359.97438 * 5 4 3 7 7 N 1.34782 * 120.00158 * 179.97438 * 5 4 3 8 8 C 1.46718 * 125.24239 * 0.02562 * 7 5 4 9 9 C 1.54038 * 106.53644 * 160.78479 * 8 7 5 10 10 C 1.53891 * 103.86021 * 28.03507 * 9 8 7 11 11 H 1.08997 * 111.74930 * 95.30846 * 10 9 8 12 12 C 1.53559 * 110.01109 * 220.92175 * 10 9 8 13 13 N 1.47771 * 107.09960 * 117.81389 * 12 10 9 14 14 C 1.46900 * 111.26473 * 212.00439 * 13 12 10 15 15 C 1.50702 * 109.46962 * 301.08091 * 14 13 12 16 16 O 1.21299 * 119.99972 * 354.01548 * 15 14 13 17 17 N 1.34777 * 119.99971 * 174.02303 * 15 14 13 18 18 C 1.37099 * 119.99985 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99798 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99853 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00087 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00112 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47245 * 89.99993 * 22 20 18 24 24 H 1.48504 * 109.47055 * 209.99825 * 22 20 18 25 25 H 1.48498 * 109.46915 * 330.00119 * 22 20 18 26 26 C 1.48335 * 105.77095 * 332.63608 * 13 12 10 27 27 C 1.46779 * 125.24215 * 179.71348 * 7 5 4 28 28 H 1.09006 * 112.19832 * 58.46433 * 27 7 5 29 29 H 1.08997 * 109.47088 * 60.00479 * 1 2 3 30 30 H 1.09001 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47851 * 300.00145 * 1 2 3 32 32 H 1.08990 * 109.47464 * 59.99777 * 3 2 1 33 33 H 1.09005 * 109.47332 * 299.99471 * 3 2 1 34 34 H 1.09000 * 109.47575 * 59.99437 * 4 3 2 35 35 H 1.09005 * 109.46937 * 299.99400 * 4 3 2 36 36 H 1.09001 * 110.04459 * 280.05662 * 8 7 5 37 37 H 1.09002 * 110.04761 * 41.51557 * 8 7 5 38 38 H 1.09003 * 110.54709 * 146.63049 * 9 8 7 39 39 H 1.08995 * 110.54772 * 269.29524 * 9 8 7 40 40 H 1.09000 * 109.97147 * 237.69127 * 12 10 9 41 41 H 1.08997 * 109.97502 * 358.97140 * 12 10 9 42 42 H 1.09000 * 109.46960 * 61.07578 * 14 13 12 43 43 H 1.08996 * 109.47347 * 181.07336 * 14 13 12 44 44 H 0.97000 * 119.99813 * 359.97438 * 17 15 14 45 45 H 0.96999 * 119.99967 * 180.02562 * 21 20 18 46 46 H 1.08999 * 110.53070 * 279.63715 * 26 13 12 47 47 H 1.08997 * 110.64492 * 156.94098 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 6 3.7422 1.9400 -0.0006 5 6 4.0811 3.4084 0.0000 6 8 3.1941 4.2356 0.0004 7 7 5.3700 3.8026 0.0001 8 6 6.5300 2.9043 -0.0009 9 6 7.7303 3.7387 -0.4864 10 6 7.3767 5.1750 -0.0618 11 1 7.8249 5.4346 0.8972 12 6 7.7609 6.1615 -1.1741 13 7 6.5140 6.8114 -1.6282 14 6 6.5777 7.1466 -3.0571 15 6 7.7431 8.0693 -3.3051 16 8 8.3849 8.5004 -2.3705 17 7 8.0722 8.4154 -4.5654 18 6 9.1322 9.2552 -4.7910 19 1 9.7031 9.6397 -3.9588 20 6 9.4711 9.6125 -6.0903 21 7 10.4867 10.4179 -6.3066 22 14 8.4830 8.9481 -7.5297 23 1 7.3632 9.8755 -7.8314 24 1 9.3620 8.8294 -8.7207 25 1 7.9384 7.6113 -7.1810 26 6 5.4296 5.8358 -1.3589 27 6 5.8294 5.1966 -0.0053 28 1 5.4557 5.7567 0.8520 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 1.8030 2.2371 0.8899 33 1 1.8030 2.2372 -0.8901 34 1 4.1608 1.4705 -0.8908 35 1 4.1615 1.4704 0.8892 36 1 6.7161 2.5333 1.0070 37 1 6.3559 2.0699 -0.6803 38 1 8.6475 3.4101 0.0024 39 1 7.8301 3.6712 -1.5697 40 1 8.4566 6.9062 -0.7873 41 1 8.2146 5.6248 -2.0073 42 1 6.7066 6.2340 -3.6389 43 1 5.6532 7.6405 -3.3560 44 1 7.5591 8.0704 -5.3128 45 1 10.7231 10.6676 -7.2136 46 1 5.3925 5.0794 -2.1428 47 1 4.4687 6.3432 -1.2731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186764542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:59 Heat of formation + Delta-G solvation = -76.788472 kcal Electronic energy + Delta-G solvation = -27591.703017 eV Core-core repulsion = 23706.904826 eV Total energy + Delta-G solvation = -3884.798191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.91466 -40.48675 -39.47346 -36.95993 -35.91173 -34.07695 -33.78014 -33.08136 -31.41912 -29.83065 -28.80851 -28.26041 -26.11656 -25.52627 -23.64616 -22.51196 -21.32158 -21.16672 -20.37362 -19.90320 -18.55764 -17.71951 -17.51556 -16.99405 -16.87033 -16.76800 -16.50285 -16.28405 -15.73639 -15.47592 -15.22211 -14.98035 -14.68810 -14.55986 -14.40302 -14.26905 -14.17875 -14.02511 -13.75246 -13.59138 -13.33973 -13.22061 -13.05210 -12.94952 -12.80313 -12.50667 -12.43372 -12.39336 -12.00117 -11.96931 -11.86294 -11.60842 -11.50324 -11.04045 -10.94899 -10.41371 -10.26141 -9.77448 -9.35281 -8.71282 -8.42611 -6.03330 0.61452 1.28259 1.33775 1.42310 1.53984 1.59117 1.90870 1.91506 2.21071 2.64550 3.05640 3.13307 3.34067 3.48340 3.60645 3.66458 3.87074 3.89733 4.05530 4.07059 4.15760 4.23106 4.30659 4.31566 4.34560 4.35385 4.43695 4.48962 4.56271 4.63398 4.68664 4.75503 4.84365 4.87170 4.89059 4.93828 5.06954 5.12343 5.22206 5.33765 5.50481 5.82455 5.87758 5.96908 6.46120 6.57464 6.86042 7.06807 7.36819 7.92830 8.74754 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.002130 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.166812 B =13139.351640 C =13986.578761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.289 6.289 3 C -0.063 4.063 4 C -0.109 4.109 5 C 0.529 3.471 6 O -0.578 6.578 7 N -0.609 5.609 8 C 0.099 3.901 9 C -0.122 4.122 10 C -0.097 4.097 11 H 0.108 0.892 12 C 0.056 3.944 13 N -0.517 5.517 14 C 0.048 3.952 15 C 0.452 3.548 16 O -0.602 6.602 17 N -0.591 5.591 18 C -0.326 4.326 19 H 0.057 0.943 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.963 3.037 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.233 1.233 26 C 0.042 3.958 27 C 0.142 3.858 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.388 0.612 45 H 0.279 0.721 46 H 0.052 0.948 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.884 -26.920 11.074 33.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.063 6.063 3 C -0.211 4.211 4 C -0.150 4.150 5 C 0.318 3.682 6 O -0.458 6.458 7 N -0.342 5.342 8 C -0.022 4.022 9 C -0.160 4.160 10 C -0.116 4.116 11 H 0.127 0.873 12 C -0.072 4.072 13 N -0.242 5.242 14 C -0.083 4.083 15 C 0.239 3.761 16 O -0.486 6.486 17 N -0.232 5.232 18 C -0.456 4.456 19 H 0.076 0.924 20 C -0.212 4.212 21 N -0.573 5.573 22 Si 0.783 3.217 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.157 1.157 26 C -0.087 4.087 27 C 0.037 3.963 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.132 0.868 44 H 0.224 0.776 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.289 -26.517 11.836 33.295 hybrid contribution -0.692 1.038 -1.514 1.962 sum -16.981 -25.479 10.322 32.312 Atomic orbital electron populations 1.23455 0.91474 1.07599 1.05749 1.86788 1.10552 1.10767 1.98191 1.23007 0.98647 0.93770 1.05710 1.21330 0.95010 0.91325 1.07313 1.20707 0.80609 0.91795 0.75108 1.90723 1.47252 1.56093 1.51703 1.48436 1.05964 1.07171 1.72670 1.22328 0.83309 0.93061 1.03540 1.22586 0.99271 0.92076 1.02097 1.22598 0.93202 0.96083 0.99740 0.87348 1.22738 0.92247 0.95579 0.96640 1.64243 1.04500 1.39849 1.15596 1.22012 0.97566 0.98503 0.90259 1.20682 0.87572 0.85277 0.82526 1.90536 1.56186 1.58585 1.43304 1.42027 1.29559 1.44535 1.07112 1.18992 1.07985 1.24279 0.94302 0.92445 1.26076 0.97752 0.96621 1.00784 1.69797 1.28843 1.35486 1.23142 0.85397 0.78693 0.80241 0.77403 1.18331 1.19823 1.15673 1.23435 0.94983 0.93492 0.96784 1.22207 0.94289 0.82865 0.96889 0.89520 0.89878 0.86671 0.89755 0.90026 0.90219 0.86257 0.85982 0.88760 0.88176 0.87166 0.91034 0.91809 0.94126 0.90527 0.86845 0.77635 0.91120 0.93020 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.76 113.37 1.22 0.24 16 2 S -0.29 -3.78 22.38 -56.49 -1.26 -5.05 16 3 C -0.06 -0.88 5.23 71.98 0.38 -0.50 16 4 C -0.11 -1.28 4.73 29.85 0.14 -1.14 16 5 C 0.53 10.05 7.62 87.66 0.67 10.72 16 6 O -0.58 -15.92 15.96 -3.04 -0.05 -15.97 16 7 N -0.61 -10.38 2.92 -787.45 -2.30 -12.68 16 8 C 0.10 0.97 6.59 86.69 0.57 1.54 16 9 C -0.12 -1.60 6.48 31.25 0.20 -1.40 16 10 C -0.10 -1.97 3.87 -9.68 -0.04 -2.01 16 11 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 12 C 0.06 1.69 5.03 86.32 0.43 2.13 16 13 N -0.52 -16.74 5.11 -889.37 -4.55 -21.29 16 14 C 0.05 1.59 5.31 85.56 0.45 2.05 16 15 C 0.45 20.75 7.41 87.66 0.65 21.40 16 16 O -0.60 -33.27 14.06 -3.09 -0.04 -33.31 16 17 N -0.59 -28.15 5.09 -306.98 -1.56 -29.72 16 18 C -0.33 -19.14 10.16 84.04 0.85 -18.29 16 19 H 0.06 4.00 7.39 -2.91 -0.02 3.98 16 20 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 21 N -0.93 -56.11 13.96 21.66 0.30 -55.81 16 22 Si 0.96 38.97 27.74 68.60 1.90 40.87 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 26 C 0.04 1.09 5.61 86.69 0.49 1.58 16 27 C 0.14 3.16 3.89 46.23 0.18 3.34 16 28 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 1.28 8.10 -2.40 -0.02 1.26 16 33 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 34 H 0.12 1.03 7.86 -2.39 -0.02 1.01 16 35 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.10 0.57 7.57 -2.39 -0.02 0.55 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.06 7.34 -2.39 -0.02 1.04 16 40 H 0.06 2.43 6.93 -2.39 -0.02 2.41 16 41 H 0.04 1.23 6.82 -2.39 -0.02 1.22 16 42 H 0.08 2.12 7.99 -2.39 -0.02 2.10 16 43 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.39 15.47 5.76 -92.71 -0.53 14.93 16 45 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.05 1.27 7.84 -2.39 -0.02 1.25 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -80.34 387.54 -0.52 -80.86 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.38 Total: 32.72 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.67 Total: 19.37 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -8.11 Total: -119.49 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -0.09 Total: -49.29 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.90 Total: 40.87 kcal Atomic # 16 Polarization: -3.78 SS G_CDS: -1.26 Total: -5.05 kcal Total: -80.34 -0.52 -80.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186764542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.072 kcal (2) G-P(sol) polarization free energy of solvation -80.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds