Wall clock time and date at job start Sat Apr 11 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99799 * 2 1 4 4 C 1.38426 * 120.00361 * 180.02562 * 2 1 3 5 5 N 1.32600 * 119.13666 * 5.67624 * 4 2 1 6 6 C 1.32110 * 120.95688 * 180.02562 * 5 4 2 7 7 C 1.38815 * 119.24649 * 359.97438 * 6 5 4 8 8 C 1.39472 * 118.42366 * 0.02562 * 7 6 5 9 9 C 1.48462 * 120.50456 * 179.97438 * 8 7 6 10 10 O 1.21474 * 120.00210 * 6.38878 * 9 8 7 11 11 N 1.34779 * 120.00076 * 186.38881 * 9 8 7 12 12 C 1.46510 * 119.99790 * 356.77318 * 11 9 8 13 13 C 1.50689 * 109.47005 * 89.88158 * 12 11 9 14 14 H 1.07997 * 120.00773 * 356.12292 * 13 12 11 15 15 C 1.37878 * 119.99952 * 176.11662 * 13 12 11 16 16 N 1.31513 * 119.99869 * 348.39155 * 15 13 12 17 17 Si 1.86805 * 120.00326 * 168.38521 * 15 13 12 18 18 H 1.48502 * 109.46741 * 90.00189 * 17 15 13 19 19 H 1.48494 * 109.47362 * 210.00428 * 17 15 13 20 20 H 1.48499 * 109.46890 * 330.00349 * 17 15 13 21 21 C 1.46489 * 120.00168 * 177.04774 * 11 9 8 22 22 C 1.50704 * 109.47562 * 89.99954 * 21 11 9 23 23 C 1.38673 * 120.41904 * 269.72719 * 22 21 11 24 24 C 1.38620 * 118.42287 * 179.77479 * 23 22 21 25 25 C 1.38231 * 119.15922 * 0.51847 * 24 23 22 26 26 N 1.31852 * 120.76465 * 359.71721 * 25 24 23 27 27 C 1.31889 * 121.72242 * 0.02562 * 26 25 24 28 28 N 1.32264 * 119.13852 * 185.95351 * 4 2 1 29 29 H 1.08992 * 109.47425 * 269.99635 * 1 2 3 30 30 H 1.09004 * 109.46952 * 30.00252 * 1 2 3 31 31 H 1.08999 * 109.46688 * 149.99921 * 1 2 3 32 32 H 1.09002 * 109.47380 * 274.91489 * 3 2 1 33 33 H 1.09005 * 109.47128 * 34.91259 * 3 2 1 34 34 H 1.08997 * 109.47308 * 154.90989 * 3 2 1 35 35 H 1.07999 * 120.37789 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.79358 * 179.97438 * 7 6 5 37 37 H 1.08994 * 109.46769 * 209.88618 * 12 11 9 38 38 H 1.08996 * 109.46712 * 329.88161 * 12 11 9 39 39 H 0.97000 * 119.99857 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.47555 * 209.99633 * 21 11 9 41 41 H 1.09002 * 109.47307 * 330.00245 * 21 11 9 42 42 H 1.08006 * 120.78790 * 0.02562 * 23 22 21 43 43 H 1.07996 * 120.42365 * 180.21518 * 24 23 22 44 44 H 1.07997 * 119.61978 * 179.75121 * 25 24 23 45 45 H 1.07999 * 119.61803 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1572 -1.1988 -0.0005 5 7 1.4820 -2.3341 -0.1156 6 6 2.1061 -3.4985 -0.1198 7 6 3.4889 -3.5273 -0.0022 8 6 4.1703 -2.3162 0.1172 9 6 5.6492 -2.2931 0.2462 10 8 6.2850 -3.3218 0.1322 11 7 6.2863 -1.1307 0.4899 12 6 5.5272 0.1206 0.5572 13 6 5.0761 0.3588 1.9751 14 1 5.2751 -0.3807 2.7366 15 6 4.4095 1.5211 2.3004 16 7 4.3657 2.5163 1.4419 17 14 3.5682 1.6820 3.9606 18 1 4.5236 2.2476 4.9468 19 1 2.3944 2.5829 3.8355 20 1 3.1180 0.3432 4.4191 21 6 7.7385 -1.1175 0.6815 22 6 8.4191 -0.9204 -0.6486 23 6 8.7729 -2.0135 -1.4251 24 6 9.3927 -1.7843 -2.6437 25 6 9.6455 -0.4834 -3.0366 26 7 9.2993 0.5320 -2.2700 27 6 8.7036 0.3516 -1.1072 28 7 3.4743 -1.1820 0.1193 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 2.3029 1.6275 -1.0239 33 1 1.6493 2.0048 0.5882 34 1 3.1851 1.1181 0.4358 35 1 1.5468 -4.4176 -0.2144 36 1 4.0245 -4.4651 -0.0023 37 1 6.1597 0.9471 0.2333 38 1 4.6562 0.0526 -0.0946 39 1 3.8970 3.3341 1.6709 40 1 8.0093 -0.3022 1.3524 41 1 8.0565 -2.0657 1.1152 42 1 8.5668 -3.0195 -1.0902 43 1 9.6790 -2.6118 -3.2758 44 1 10.1317 -0.2964 -3.9826 45 1 8.4345 1.2080 -0.5068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187997335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:04 Heat of formation + Delta-G solvation = 102.252181 kcal Electronic energy + Delta-G solvation = -30644.563807 eV Core-core repulsion = 26664.378201 eV Total energy + Delta-G solvation = -3980.185606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74812 -39.96335 -38.69827 -36.19239 -35.35654 -33.66795 -32.84682 -32.09473 -31.22794 -30.72793 -27.68488 -27.53375 -26.43334 -25.20166 -24.32800 -23.39607 -22.72724 -22.20011 -21.27605 -19.31941 -17.45274 -16.98693 -16.88999 -16.39560 -16.07648 -15.55845 -15.52184 -15.29099 -15.05844 -15.00324 -14.48727 -14.14012 -13.87342 -13.60384 -13.52454 -13.34863 -12.90582 -12.87526 -12.70337 -12.36366 -12.09443 -11.86421 -11.82765 -11.75249 -11.30549 -11.03534 -10.94874 -10.70207 -10.32473 -10.26459 -10.11469 -9.88861 -9.74870 -9.64786 -9.52660 -9.22032 -8.83254 -8.57583 -7.97055 -7.78969 -7.33503 -6.18030 -4.14316 1.16022 1.31888 1.53882 1.64294 3.16164 3.20041 3.27521 3.31958 3.39626 3.63859 4.14631 4.32032 4.47006 4.55315 4.68865 4.92245 5.04368 5.11575 5.15139 5.18116 5.26055 5.32808 5.45392 5.53349 5.61011 5.68159 5.75581 5.87474 5.98849 6.01825 6.07071 6.13452 6.19919 6.34948 6.36060 6.55214 6.58635 6.70690 6.94999 7.12061 7.26356 7.45491 7.48555 7.64018 7.80154 7.96044 8.16576 8.18679 8.20881 8.60807 8.80179 8.88637 9.43514 10.87248 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.004873 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.146216 B = 5744.035728 C = 7062.290780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.587 5.587 3 C 0.069 3.931 4 C 0.553 3.447 5 N -0.569 5.569 6 C 0.181 3.819 7 C -0.251 4.251 8 C 0.184 3.816 9 C 0.566 3.434 10 O -0.559 6.559 11 N -0.564 5.564 12 C 0.202 3.798 13 C -0.505 4.505 14 H 0.053 0.947 15 C 0.069 3.931 16 N -0.888 5.888 17 Si 0.878 3.122 18 H -0.281 1.281 19 H -0.284 1.284 20 H -0.278 1.278 21 C 0.158 3.842 22 C -0.146 4.146 23 C -0.055 4.055 24 C -0.182 4.182 25 C 0.090 3.910 26 N -0.489 5.489 27 C 0.117 3.883 28 N -0.483 5.483 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.051 0.949 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.147 0.853 37 H 0.033 0.967 38 H 0.104 0.896 39 H 0.264 0.736 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.149 0.851 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 -6.745 -5.591 8.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.303 5.303 3 C -0.072 4.072 4 C 0.198 3.802 5 N -0.293 5.293 6 C 0.012 3.988 7 C -0.278 4.278 8 C 0.033 3.967 9 C 0.352 3.648 10 O -0.439 6.439 11 N -0.291 5.291 12 C 0.083 3.917 13 C -0.544 4.544 14 H 0.071 0.929 15 C -0.132 4.132 16 N -0.528 5.528 17 Si 0.706 3.294 18 H -0.207 1.207 19 H -0.210 1.210 20 H -0.203 1.203 21 C 0.034 3.966 22 C -0.149 4.149 23 C -0.082 4.082 24 C -0.202 4.202 25 C -0.067 4.067 26 N -0.198 5.198 27 C -0.040 4.040 28 N -0.207 5.207 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.051 0.949 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.156 0.844 43 H 0.147 0.853 44 H 0.167 0.833 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.115 -5.078 -5.916 7.797 hybrid contribution -0.492 -1.305 1.348 1.939 sum -0.607 -6.382 -4.569 7.872 Atomic orbital electron populations 1.21562 0.78985 1.02517 1.01105 1.46060 1.05186 1.02724 1.76334 1.22707 1.02548 0.81378 1.00616 1.19535 0.85833 0.86155 0.88654 1.67731 1.41373 0.98285 1.21866 1.22800 0.91260 0.95062 0.89645 1.22385 0.96073 0.99767 1.09555 1.21300 0.94568 0.88851 0.91947 1.17899 0.85475 0.83748 0.77711 1.90653 1.66551 1.33286 1.53408 1.48297 1.06191 1.09421 1.65216 1.20688 0.93377 0.78475 0.99133 1.21322 1.35565 1.03158 0.94318 0.92896 1.24698 0.96566 0.95289 0.96610 1.69912 1.43036 1.04282 1.35614 0.86803 0.79675 0.77953 0.84927 1.20675 1.20979 1.20272 1.20247 0.80394 1.03804 0.92147 1.21384 0.99811 0.94403 0.99324 1.21672 0.93545 0.99828 0.93155 1.22098 1.01899 0.98488 0.97744 1.22701 0.96772 0.88593 0.98668 1.67715 1.11297 1.35470 1.05302 1.22835 0.92790 0.96378 0.91990 1.68807 1.05740 1.28214 1.17914 0.93662 0.91796 0.90498 0.94592 0.92980 0.82375 0.81738 0.83504 0.94943 0.87969 0.92645 0.88621 0.89745 0.84391 0.85276 0.83328 0.82363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.49 10.51 59.85 0.63 2.12 16 2 N -0.59 -11.03 3.37 -191.92 -0.65 -11.68 16 3 C 0.07 1.37 9.95 59.85 0.60 1.97 16 4 C 0.55 11.01 8.16 -322.94 -2.64 8.37 16 5 N -0.57 -10.02 9.06 -13.94 -0.13 -10.15 16 6 C 0.18 2.72 11.30 -17.22 -0.19 2.52 16 7 C -0.25 -4.17 9.71 -38.91 -0.38 -4.55 16 8 C 0.18 3.69 6.68 -82.65 -0.55 3.14 16 9 C 0.57 11.59 7.67 -12.05 -0.09 11.50 16 10 O -0.56 -11.46 15.53 5.39 0.08 -11.37 16 11 N -0.56 -11.42 2.44 -177.33 -0.43 -11.85 16 12 C 0.20 4.57 4.46 -5.19 -0.02 4.55 16 13 C -0.50 -12.40 8.35 -34.45 -0.29 -12.68 16 14 H 0.05 1.37 7.84 -52.49 -0.41 0.96 16 15 C 0.07 1.69 4.15 -17.82 -0.07 1.62 16 16 N -0.89 -21.91 11.18 55.43 0.62 -21.29 16 17 Si 0.88 20.12 29.55 -169.99 -5.02 15.09 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 C 0.16 2.74 5.53 -5.20 -0.03 2.71 16 22 C -0.15 -2.39 5.48 -104.48 -0.57 -2.96 16 23 C -0.06 -0.84 9.83 -39.28 -0.39 -1.22 16 24 C -0.18 -2.39 10.11 -39.44 -0.40 -2.79 16 25 C 0.09 1.23 11.18 -17.55 -0.20 1.04 16 26 N -0.49 -8.02 10.36 -13.25 -0.14 -8.16 16 27 C 0.12 1.95 10.86 -17.55 -0.19 1.76 16 28 N -0.48 -10.23 4.50 -10.49 -0.05 -10.27 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.08 1.07 7.25 -51.93 -0.38 0.69 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.99 8.11 -51.93 -0.42 0.57 16 34 H 0.16 3.60 1.56 -51.93 -0.08 3.52 16 35 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.15 2.18 7.74 -52.49 -0.41 1.77 16 37 H 0.03 0.78 8.03 -51.93 -0.42 0.36 16 38 H 0.10 2.44 3.54 -64.96 -0.23 2.21 16 39 H 0.26 6.30 8.31 -40.82 -0.34 5.96 16 40 H 0.10 1.61 8.03 -51.93 -0.42 1.19 16 41 H 0.08 1.41 7.42 -51.93 -0.39 1.02 16 42 H 0.14 2.06 7.58 -52.48 -0.40 1.66 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 44 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.16 2.59 8.06 -52.49 -0.42 2.16 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -28.48 373.25 -10.51 -38.98 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.63 Total: 7.98 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: -4.79 Total: 17.09 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -0.77 Total: -73.40 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.48 -10.51 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187997335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.237 kcal (2) G-P(sol) polarization free energy of solvation -28.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds