Wall clock time and date at job start Sat Apr 11 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99799 * 2 1 4 4 C 1.38426 * 120.00361 * 180.02562 * 2 1 3 5 5 N 1.32600 * 119.13666 * 5.67624 * 4 2 1 6 6 C 1.32110 * 120.95688 * 180.02562 * 5 4 2 7 7 C 1.38815 * 119.24649 * 359.97438 * 6 5 4 8 8 C 1.39472 * 118.42366 * 0.02562 * 7 6 5 9 9 C 1.48462 * 120.50456 * 179.97438 * 8 7 6 10 10 O 1.21474 * 120.00210 * 6.38878 * 9 8 7 11 11 N 1.34779 * 120.00076 * 186.38881 * 9 8 7 12 12 C 1.46510 * 119.99790 * 356.77318 * 11 9 8 13 13 C 1.50689 * 109.47005 * 89.88158 * 12 11 9 14 14 H 1.07997 * 120.00773 * 356.12292 * 13 12 11 15 15 C 1.37878 * 119.99952 * 176.11662 * 13 12 11 16 16 N 1.31513 * 119.99869 * 348.39155 * 15 13 12 17 17 Si 1.86805 * 120.00326 * 168.38521 * 15 13 12 18 18 H 1.48502 * 109.46741 * 90.00189 * 17 15 13 19 19 H 1.48494 * 109.47362 * 210.00428 * 17 15 13 20 20 H 1.48499 * 109.46890 * 330.00349 * 17 15 13 21 21 C 1.46489 * 120.00168 * 177.04774 * 11 9 8 22 22 C 1.50704 * 109.47562 * 89.99954 * 21 11 9 23 23 C 1.38673 * 120.41904 * 269.72719 * 22 21 11 24 24 C 1.38620 * 118.42287 * 179.77479 * 23 22 21 25 25 C 1.38231 * 119.15922 * 0.51847 * 24 23 22 26 26 N 1.31852 * 120.76465 * 359.71721 * 25 24 23 27 27 C 1.31889 * 121.72242 * 0.02562 * 26 25 24 28 28 N 1.32264 * 119.13852 * 185.95351 * 4 2 1 29 29 H 1.08992 * 109.47425 * 269.99635 * 1 2 3 30 30 H 1.09004 * 109.46952 * 30.00252 * 1 2 3 31 31 H 1.08999 * 109.46688 * 149.99921 * 1 2 3 32 32 H 1.09002 * 109.47380 * 274.91489 * 3 2 1 33 33 H 1.09005 * 109.47128 * 34.91259 * 3 2 1 34 34 H 1.08997 * 109.47308 * 154.90989 * 3 2 1 35 35 H 1.07999 * 120.37789 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.79358 * 179.97438 * 7 6 5 37 37 H 1.08994 * 109.46769 * 209.88618 * 12 11 9 38 38 H 1.08996 * 109.46712 * 329.88161 * 12 11 9 39 39 H 0.97000 * 119.99857 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.47555 * 209.99633 * 21 11 9 41 41 H 1.09002 * 109.47307 * 330.00245 * 21 11 9 42 42 H 1.08006 * 120.78790 * 0.02562 * 23 22 21 43 43 H 1.07996 * 120.42365 * 180.21518 * 24 23 22 44 44 H 1.07997 * 119.61978 * 179.75121 * 25 24 23 45 45 H 1.07999 * 119.61803 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1572 -1.1988 -0.0005 5 7 1.4820 -2.3341 -0.1156 6 6 2.1061 -3.4985 -0.1198 7 6 3.4889 -3.5273 -0.0022 8 6 4.1703 -2.3162 0.1172 9 6 5.6492 -2.2931 0.2462 10 8 6.2850 -3.3218 0.1322 11 7 6.2863 -1.1307 0.4899 12 6 5.5272 0.1206 0.5572 13 6 5.0761 0.3588 1.9751 14 1 5.2751 -0.3807 2.7366 15 6 4.4095 1.5211 2.3004 16 7 4.3657 2.5163 1.4419 17 14 3.5682 1.6820 3.9606 18 1 4.5236 2.2476 4.9468 19 1 2.3944 2.5829 3.8355 20 1 3.1180 0.3432 4.4191 21 6 7.7385 -1.1175 0.6815 22 6 8.4191 -0.9204 -0.6486 23 6 8.7729 -2.0135 -1.4251 24 6 9.3927 -1.7843 -2.6437 25 6 9.6455 -0.4834 -3.0366 26 7 9.2993 0.5320 -2.2700 27 6 8.7036 0.3516 -1.1072 28 7 3.4743 -1.1820 0.1193 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 2.3029 1.6275 -1.0239 33 1 1.6493 2.0048 0.5882 34 1 3.1851 1.1181 0.4358 35 1 1.5468 -4.4176 -0.2144 36 1 4.0245 -4.4651 -0.0023 37 1 6.1597 0.9471 0.2333 38 1 4.6562 0.0526 -0.0946 39 1 3.8970 3.3341 1.6709 40 1 8.0093 -0.3022 1.3524 41 1 8.0565 -2.0657 1.1152 42 1 8.5668 -3.0195 -1.0902 43 1 9.6790 -2.6118 -3.2758 44 1 10.1317 -0.2964 -3.9826 45 1 8.4345 1.2080 -0.5068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187997335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:03 Heat of formation + Delta-G solvation = 89.277461 kcal Electronic energy + Delta-G solvation = -30645.126433 eV Core-core repulsion = 26664.378201 eV Total energy + Delta-G solvation = -3980.748232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16120 -41.20568 -40.16459 -37.59006 -36.92512 -35.11804 -34.54513 -33.41730 -32.48361 -32.08544 -29.25955 -29.02889 -27.87908 -26.56955 -25.77349 -24.81754 -24.24596 -23.48539 -22.60850 -20.79898 -18.90053 -18.68986 -18.21751 -17.87367 -17.37937 -17.07894 -16.90624 -16.72727 -16.39726 -16.35543 -16.24591 -15.49537 -15.23184 -14.96082 -14.80116 -14.67956 -14.35878 -14.24281 -14.12505 -13.88526 -13.58352 -13.28984 -13.25116 -13.04884 -12.81574 -12.76210 -12.54698 -12.26652 -12.15878 -11.81217 -11.67905 -11.46704 -11.26964 -11.13652 -10.74724 -10.47102 -10.37369 -10.00589 -9.55409 -9.37848 -8.73253 -8.08265 -6.08640 -0.27055 0.13821 0.33643 0.35366 1.33893 1.39510 1.45531 1.80993 1.86669 2.18519 2.44333 2.91936 3.05683 3.18435 3.22142 3.55482 3.58073 3.73735 3.89959 3.92734 4.10874 4.12308 4.16508 4.32927 4.45604 4.49823 4.54842 4.59340 4.67803 4.74616 4.81415 4.84961 4.88394 4.90087 5.03395 5.21143 5.28008 5.38453 5.50266 5.70885 5.79480 5.80455 5.88816 6.01275 6.08815 6.28112 6.50737 6.53370 6.90945 7.02905 7.13364 7.36986 7.50558 8.96070 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.004873 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.146216 B = 5744.035728 C = 7062.290780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.596 5.596 3 C 0.074 3.926 4 C 0.533 3.467 5 N -0.567 5.567 6 C 0.194 3.806 7 C -0.241 4.241 8 C 0.151 3.849 9 C 0.561 3.439 10 O -0.564 6.564 11 N -0.569 5.569 12 C 0.223 3.777 13 C -0.510 4.510 14 H 0.032 0.968 15 C 0.048 3.952 16 N -0.896 5.896 17 Si 0.917 3.083 18 H -0.280 1.280 19 H -0.276 1.276 20 H -0.292 1.292 21 C 0.159 3.841 22 C -0.156 4.156 23 C -0.063 4.063 24 C -0.170 4.170 25 C 0.089 3.911 26 N -0.512 5.512 27 C 0.102 3.898 28 N -0.515 5.515 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.134 0.866 35 H 0.220 0.780 36 H 0.167 0.833 37 H 0.011 0.989 38 H 0.098 0.902 39 H 0.266 0.734 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.139 0.861 43 H 0.167 0.833 44 H 0.186 0.814 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 -8.512 -6.789 10.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.312 5.312 3 C -0.069 4.069 4 C 0.178 3.822 5 N -0.290 5.290 6 C 0.025 3.975 7 C -0.268 4.268 8 C 0.002 3.998 9 C 0.347 3.653 10 O -0.445 6.445 11 N -0.297 5.297 12 C 0.103 3.897 13 C -0.549 4.549 14 H 0.051 0.949 15 C -0.152 4.152 16 N -0.537 5.537 17 Si 0.745 3.255 18 H -0.206 1.206 19 H -0.201 1.201 20 H -0.218 1.218 21 C 0.036 3.964 22 C -0.159 4.159 23 C -0.090 4.090 24 C -0.189 4.189 25 C -0.068 4.068 26 N -0.220 5.220 27 C -0.054 4.054 28 N -0.239 5.239 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.152 0.848 35 H 0.236 0.764 36 H 0.184 0.816 37 H 0.029 0.971 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.157 0.843 43 H 0.185 0.815 44 H 0.203 0.797 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.851 -6.841 -7.109 9.903 hybrid contribution -0.249 -0.861 1.663 1.889 sum -1.101 -7.702 -5.446 9.497 Atomic orbital electron populations 1.21734 0.76688 1.03996 1.01664 1.46219 1.06547 1.02018 1.76443 1.22452 1.01741 0.82237 1.00461 1.19785 0.85751 0.87209 0.89425 1.67856 1.41143 0.98384 1.21632 1.23689 0.90920 0.95926 0.86922 1.22685 0.96942 0.99203 1.08006 1.21461 0.94362 0.90082 0.93865 1.18131 0.86133 0.83589 0.77445 1.90623 1.66889 1.33114 1.53850 1.48279 1.07207 1.08809 1.65369 1.20294 0.92820 0.78749 0.97865 1.21292 1.36116 1.02768 0.94717 0.94941 1.25015 0.96761 0.95201 0.98234 1.69964 1.43108 1.04365 1.36226 0.86216 0.79260 0.77055 0.82926 1.20569 1.20121 1.21796 1.20283 0.79175 1.03790 0.93159 1.21226 1.00683 0.94901 0.99083 1.21797 0.93898 0.99317 0.93960 1.22474 0.99982 0.99483 0.96962 1.23351 0.95808 0.88332 0.99343 1.67716 1.11932 1.36975 1.05421 1.22707 0.93895 0.96240 0.92600 1.68609 1.06734 1.29215 1.19343 0.93455 0.89674 0.89687 0.94474 0.92700 0.84798 0.76392 0.81559 0.97134 0.88552 0.92467 0.89104 0.89288 0.84286 0.81505 0.79744 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.80 10.51 127.77 1.34 4.15 16 2 N -0.60 -22.07 3.37 -761.12 -2.57 -24.64 16 3 C 0.07 2.95 9.95 127.77 1.27 4.22 16 4 C 0.53 20.93 8.16 261.53 2.13 23.06 16 5 N -0.57 -18.74 9.06 -198.00 -1.79 -20.54 16 6 C 0.19 5.20 11.30 84.79 0.96 6.16 16 7 C -0.24 -7.55 9.71 22.71 0.22 -7.33 16 8 C 0.15 6.04 6.68 41.98 0.28 6.32 16 9 C 0.56 23.27 7.67 86.97 0.67 23.94 16 10 O -0.56 -22.99 15.53 -3.63 -0.06 -23.05 16 11 N -0.57 -23.92 2.44 -833.24 -2.03 -25.95 16 12 C 0.22 10.53 4.46 85.63 0.38 10.92 16 13 C -0.51 -25.97 8.35 25.60 0.21 -25.75 16 14 H 0.03 1.75 7.84 -2.91 -0.02 1.73 16 15 C 0.05 2.39 4.15 84.66 0.35 2.74 16 16 N -0.90 -45.12 11.18 21.45 0.24 -44.88 16 17 Si 0.92 41.71 29.55 68.60 2.03 43.74 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 C 0.16 5.75 5.53 85.64 0.47 6.23 16 22 C -0.16 -5.20 5.48 -19.77 -0.11 -5.31 16 23 C -0.06 -1.85 9.83 22.47 0.22 -1.63 16 24 C -0.17 -4.03 10.11 22.36 0.23 -3.80 16 25 C 0.09 2.25 11.18 84.69 0.95 3.20 16 26 N -0.51 -16.64 10.36 -195.85 -2.03 -18.67 16 27 C 0.10 3.51 10.86 84.67 0.92 4.43 16 28 N -0.51 -22.01 4.50 -187.10 -0.84 -22.86 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.95 8.07 -2.38 -0.02 1.93 16 31 H 0.08 2.19 7.25 -2.39 -0.02 2.17 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 2.09 8.11 -2.38 -0.02 2.08 16 34 H 0.13 6.22 1.56 -2.39 0.00 6.22 16 35 H 0.22 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.17 4.47 7.74 -2.91 -0.02 4.45 16 37 H 0.01 0.54 8.03 -2.39 -0.02 0.52 16 38 H 0.10 4.81 3.54 -28.12 -0.10 4.71 16 39 H 0.27 12.83 8.31 -92.71 -0.77 12.06 16 40 H 0.09 3.28 8.03 -2.38 -0.02 3.26 16 41 H 0.09 3.07 7.42 -2.39 -0.02 3.05 16 42 H 0.14 4.02 7.58 -2.91 -0.02 3.99 16 43 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 44 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 45 H 0.15 5.20 8.06 -2.91 -0.02 5.18 16 Total: -1.00 -62.91 373.25 4.38 -58.52 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.93 Total: 26.76 kcal Atomic # 6 Polarization: 41.05 SS G_CDS: 10.50 Total: 51.55 kcal Atomic # 7 Polarization: -148.50 SS G_CDS: -9.03 Total: -157.53 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.06 Total: -23.05 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -62.91 4.38 -58.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187997335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.802 kcal (2) G-P(sol) polarization free energy of solvation -62.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds