Wall clock time and date at job start Sat Apr 11 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50695 * 120.00221 * 2 1 4 4 N 1.46504 * 109.47410 * 125.00512 * 3 2 1 5 5 C 1.34767 * 120.00039 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00485 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99927 * 179.97438 * 5 4 3 8 8 N 1.46899 * 109.47371 * 179.97438 * 7 5 4 9 9 C 1.46894 * 111.00282 * 293.95681 * 8 7 5 10 10 C 1.46897 * 111.00027 * 170.00151 * 8 7 5 11 11 H 1.08998 * 110.88885 * 61.41601 * 10 8 7 12 12 C 1.55163 * 111.03691 * 297.51486 * 10 8 7 13 13 C 1.54317 * 102.86244 * 206.21711 * 12 10 8 14 14 N 1.47018 * 107.27476 * 22.52613 * 13 12 10 15 15 C 1.34783 * 125.64335 * 180.97308 * 14 13 12 16 16 O 1.21281 * 119.99844 * 179.68932 * 15 14 13 17 17 C 1.50690 * 120.00285 * 359.68778 * 15 14 13 18 18 S 1.80998 * 109.47472 * 180.02562 * 17 15 14 19 19 C 1.76193 * 100.00330 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00262 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00381 * 180.27593 * 19 18 17 22 22 N 1.31636 * 119.99975 * 359.71764 * 21 19 18 23 23 Si 1.86801 * 120.00666 * 179.72097 * 21 19 18 24 24 H 1.48508 * 109.46621 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47027 * 119.99522 * 23 21 19 26 26 H 1.48498 * 109.47476 * 240.00034 * 23 21 19 27 27 C 1.47417 * 108.70805 * 0.70243 * 14 13 12 28 28 H 1.07998 * 120.00123 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99910 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99910 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47040 * 5.00668 * 3 2 1 32 32 H 1.08999 * 109.47800 * 245.00703 * 3 2 1 33 33 H 0.96996 * 119.99712 * 359.97438 * 4 3 2 34 34 H 1.09001 * 109.46811 * 59.99541 * 7 5 4 35 35 H 1.08991 * 109.47198 * 300.00007 * 7 5 4 36 36 H 1.08998 * 109.47227 * 301.62476 * 9 8 7 37 37 H 1.09006 * 109.47477 * 61.62215 * 9 8 7 38 38 H 1.08998 * 109.47653 * 181.62197 * 9 8 7 39 39 H 1.09005 * 110.71852 * 324.77508 * 12 10 8 40 40 H 1.08997 * 110.72155 * 87.86652 * 12 10 8 41 41 H 1.09000 * 109.98336 * 263.04697 * 13 12 10 42 42 H 1.08998 * 109.77032 * 141.88461 * 13 12 10 43 43 H 1.08998 * 109.47319 * 59.99922 * 17 15 14 44 44 H 1.09004 * 109.47387 * 300.00016 * 17 15 14 45 45 H 0.96993 * 120.00181 * 180.02562 * 22 21 19 46 46 H 1.09001 * 110.36710 * 94.93546 * 27 14 13 47 47 H 1.09005 * 110.37150 * 217.26381 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 3.7784 2.4088 1.3333 6 8 3.7145 3.3558 0.5783 7 6 4.7350 2.4366 2.4975 8 7 5.4697 3.7087 2.4974 9 6 6.3457 3.8107 1.3227 10 6 6.2345 3.8750 3.7405 11 1 6.9751 3.0828 3.8500 12 6 5.2916 3.9288 4.9716 13 6 6.1082 4.7467 5.9942 14 7 7.0848 5.5427 5.2365 15 6 7.9994 6.3775 5.7685 16 8 8.7621 6.9821 5.0448 17 6 8.0745 6.5598 7.2625 18 16 9.3922 7.7348 7.6616 19 6 9.2604 7.7572 9.4184 20 1 8.5160 7.1500 9.9120 21 6 10.1092 8.5600 10.1679 22 7 11.0163 9.3004 9.5665 23 14 9.9644 8.5898 12.0300 24 1 8.8750 7.6749 12.4565 25 1 11.2469 8.1466 12.6334 26 1 9.6564 9.9708 12.4807 27 6 6.9023 5.2715 3.7990 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6212 1.4027 -0.9314 33 1 3.0447 0.5746 1.7355 34 1 5.4401 1.6102 2.4081 35 1 4.1771 2.3389 3.4286 36 1 7.0462 2.9757 1.3182 37 1 5.7419 3.7832 0.4156 38 1 6.8991 4.7489 1.3624 39 1 4.3599 4.4365 4.7220 40 1 5.0933 2.9258 5.3496 41 1 6.6277 4.0757 6.6783 42 1 5.4445 5.4073 6.5521 43 1 8.2867 5.6010 7.7353 44 1 7.1226 6.9434 7.6300 45 1 11.6096 9.8611 10.0902 46 1 6.2513 6.0223 3.3510 47 1 7.8666 5.2525 3.2911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188958661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:06 Heat of formation + Delta-G solvation = -59.810190 kcal Electronic energy + Delta-G solvation = -26459.570464 eV Core-core repulsion = 22575.508506 eV Total energy + Delta-G solvation = -3884.061958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31879 -40.70395 -39.05328 -37.03434 -36.34800 -34.58422 -33.75305 -32.43259 -31.03391 -30.01750 -28.69557 -27.67165 -27.04738 -25.25631 -23.75569 -21.76371 -21.31869 -20.78498 -20.56487 -19.58364 -18.27499 -17.95450 -17.86335 -17.16321 -16.88349 -16.76779 -16.60242 -16.19421 -15.73839 -15.58381 -15.41382 -15.30600 -14.84323 -14.55760 -14.33843 -14.14637 -14.10464 -13.80715 -13.77701 -13.43805 -13.34670 -13.14660 -13.04682 -12.90874 -12.67185 -12.58239 -12.28659 -12.04157 -11.90902 -11.83829 -11.70933 -11.15554 -11.03840 -10.93338 -10.47374 -10.27692 -10.01100 -9.72728 -9.35435 -8.68399 -8.34407 -6.13419 1.17583 1.23594 1.42385 1.44790 1.54087 1.57337 1.68099 1.98130 2.27073 2.31760 2.98489 2.99974 3.20128 3.40054 3.63424 3.82857 3.87560 3.91917 4.04266 4.17214 4.20800 4.25166 4.32835 4.34660 4.42704 4.44473 4.53213 4.56174 4.59476 4.67274 4.77788 4.80412 4.86409 4.96620 5.01525 5.07477 5.20100 5.30616 5.42321 5.42980 5.66105 5.79563 5.86882 5.99199 6.20367 6.37041 6.62655 7.06696 7.08740 7.32944 8.75275 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032196 B = 0.001649 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.462733 B =16976.716553 C =17651.815916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.179 4.179 3 C 0.147 3.853 4 N -0.717 5.717 5 C 0.509 3.491 6 O -0.569 6.569 7 C 0.038 3.962 8 N -0.529 5.529 9 C 0.020 3.980 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.111 4.111 13 C 0.091 3.909 14 N -0.617 5.617 15 C 0.545 3.455 16 O -0.569 6.569 17 C -0.117 4.117 18 S -0.155 6.155 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.255 1.255 25 H -0.274 1.274 26 H -0.275 1.275 27 C 0.114 3.886 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.417 0.583 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.065 0.935 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.482 -26.626 -14.339 37.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.197 4.197 3 C 0.023 3.977 4 N -0.371 5.371 5 C 0.296 3.704 6 O -0.447 6.447 7 C -0.092 4.092 8 N -0.253 5.253 9 C -0.128 4.128 10 C -0.027 4.027 11 H 0.092 0.908 12 C -0.149 4.149 13 C -0.031 4.031 14 N -0.352 5.352 15 C 0.334 3.666 16 O -0.448 6.448 17 C -0.268 4.268 18 S 0.073 5.927 19 C -0.692 4.692 20 H 0.103 0.897 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.178 1.178 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.009 4.009 28 H 0.137 0.863 29 H 0.115 0.885 30 H 0.149 0.851 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.255 0.745 34 H 0.109 0.891 35 H 0.153 0.847 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.139 0.861 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.576 -24.517 -15.939 36.341 hybrid contribution 0.139 -0.874 1.635 1.860 sum -21.437 -25.391 -14.304 36.178 Atomic orbital electron populations 1.24168 0.95842 1.03113 0.96975 1.22948 0.96254 0.97475 1.03051 1.20346 0.91559 0.96385 0.89365 1.45871 1.40357 1.19908 1.30955 1.20993 0.81216 0.81839 0.86328 1.90698 1.68791 1.36718 1.48535 1.22090 0.96807 0.91846 0.98472 1.61541 1.28274 1.33857 1.01666 1.22498 0.95581 1.00950 0.93760 1.22697 0.95090 0.94880 0.90070 0.90819 1.22763 0.97819 1.02308 0.91988 1.22387 0.90612 0.94489 0.95579 1.48357 1.34614 1.43831 1.08379 1.19839 0.79099 0.78061 0.89649 1.90689 1.42918 1.48216 1.62999 1.23281 1.04396 1.04718 0.94423 1.85640 1.43325 1.55755 1.08029 1.23228 1.23192 1.31656 0.91135 0.89739 1.26153 0.93798 0.93786 1.05414 1.70198 1.19896 1.26496 1.38299 0.84879 0.78709 0.78487 0.75691 1.17824 1.19899 1.20008 1.22158 1.00001 0.97424 0.81293 0.86335 0.88513 0.85091 0.92479 0.91946 0.74549 0.89136 0.84743 0.94521 0.90780 0.92242 0.89191 0.86055 0.89467 0.90226 0.87140 0.87489 0.91994 0.91650 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 14.32 67.78 0.97 0.21 16 2 C -0.18 -0.91 9.63 25.65 0.25 -0.67 16 3 C 0.15 1.48 6.11 85.63 0.52 2.00 16 4 N -0.72 -6.05 5.55 -466.79 -2.59 -8.64 16 5 C 0.51 7.51 7.57 87.66 0.66 8.18 16 6 O -0.57 -14.25 14.31 -3.04 -0.04 -14.30 16 7 C 0.04 0.36 5.33 85.56 0.46 0.82 16 8 N -0.53 -8.78 4.40 -893.44 -3.93 -12.71 16 9 C 0.02 0.38 9.05 127.69 1.16 1.54 16 10 C 0.08 1.31 2.70 46.31 0.13 1.43 16 11 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 12 C -0.11 -1.27 5.37 31.78 0.17 -1.10 16 13 C 0.09 1.65 6.48 86.73 0.56 2.21 16 14 N -0.62 -17.76 3.33 -811.83 -2.70 -20.46 16 15 C 0.55 21.84 7.87 87.65 0.69 22.53 16 16 O -0.57 -28.45 16.12 -3.03 -0.05 -28.50 16 17 C -0.12 -4.82 5.35 71.23 0.38 -4.44 16 18 S -0.15 -8.79 20.57 -56.49 -1.16 -9.95 16 19 C -0.54 -31.29 9.50 67.95 0.65 -30.64 16 20 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 21 C 0.01 0.75 5.49 84.86 0.47 1.21 16 22 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 23 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 24 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C 0.11 2.93 5.31 86.86 0.46 3.40 16 28 H 0.12 0.21 8.06 -2.91 -0.02 0.19 16 29 H 0.10 0.52 7.84 -2.91 -0.02 0.50 16 30 H 0.13 0.27 8.06 -2.91 -0.02 0.24 16 31 H 0.06 0.75 7.79 -2.39 -0.02 0.73 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.42 0.68 8.46 -92.71 -0.78 -0.11 16 34 H 0.09 0.46 8.11 -2.39 -0.02 0.44 16 35 H 0.13 0.55 6.77 -2.39 -0.02 0.53 16 36 H 0.04 0.57 8.13 -2.39 -0.02 0.55 16 37 H 0.07 1.66 5.91 -2.38 -0.01 1.65 16 38 H 0.06 1.27 6.86 -2.39 -0.02 1.26 16 39 H 0.09 1.10 8.14 -2.38 -0.02 1.09 16 40 H 0.12 0.50 7.87 -2.39 -0.02 0.48 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 44 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 45 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.06 1.71 7.78 -2.38 -0.02 1.69 16 Total: -1.00 -86.63 401.35 -0.47 -87.10 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.18 Total: 11.42 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 7.52 Total: 6.67 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -8.93 Total: -98.06 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -0.09 Total: -42.79 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -86.63 -0.47 -87.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.285 kcal (2) G-P(sol) polarization free energy of solvation -86.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds