Wall clock time and date at job start Sat Apr 11 2020 06:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 110.99798 * 2 1 4 4 C 1.50703 * 109.47128 * 66.05077 * 3 2 1 5 5 O 1.21280 * 120.00096 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00336 * 180.02562 * 4 3 2 7 7 C 1.47580 * 134.49574 * 179.97438 * 6 4 3 8 8 C 1.53952 * 86.11611 * 204.63743 * 7 6 4 9 9 C 1.47590 * 134.49177 * 359.97438 * 6 4 3 10 10 C 1.46895 * 110.99679 * 236.05065 * 2 1 3 11 11 H 1.09004 * 110.89296 * 61.91159 * 10 2 1 12 12 C 1.55163 * 111.00349 * 185.83524 * 10 2 1 13 13 C 1.54327 * 102.94219 * 153.57576 * 12 10 2 14 14 N 1.47023 * 107.27017 * 337.80482 * 13 12 10 15 15 C 1.34772 * 125.64506 * 178.90463 * 14 13 12 16 16 O 1.21284 * 119.99941 * 180.02562 * 15 14 13 17 17 C 1.50705 * 120.00309 * 0.04683 * 15 14 13 18 18 S 1.81001 * 109.47366 * 179.97438 * 17 15 14 19 19 C 1.76194 * 99.99940 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00340 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00111 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99970 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00424 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47082 * 60.00428 * 23 21 19 25 25 H 1.48497 * 109.47385 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47202 * 300.00816 * 23 21 19 27 27 C 1.47416 * 108.70336 * 358.94399 * 14 13 12 28 28 H 1.08997 * 109.47302 * 54.20850 * 1 2 3 29 29 H 1.09005 * 109.47195 * 174.21543 * 1 2 3 30 30 H 1.08998 * 109.46968 * 294.21055 * 1 2 3 31 31 H 1.08996 * 109.47669 * 306.05184 * 3 2 1 32 32 H 1.08997 * 109.47264 * 186.04666 * 3 2 1 33 33 H 1.09004 * 113.77004 * 90.33462 * 7 6 4 34 34 H 1.09003 * 113.87021 * 318.94933 * 7 6 4 35 35 H 1.09003 * 113.73873 * 90.74165 * 8 7 6 36 36 H 1.09006 * 113.74021 * 222.04678 * 8 7 6 37 37 H 1.09002 * 113.76557 * 41.05550 * 9 6 4 38 38 H 1.09000 * 113.76466 * 269.66597 * 9 6 4 39 39 H 1.09001 * 110.71604 * 271.94209 * 12 10 2 40 40 H 1.09000 * 110.71453 * 35.21003 * 12 10 2 41 41 H 1.09004 * 109.87870 * 218.39049 * 13 12 10 42 42 H 1.08991 * 109.88276 * 97.22686 * 13 12 10 43 43 H 1.09000 * 109.46658 * 299.99914 * 17 15 14 44 44 H 1.08995 * 109.46844 * 59.99404 * 17 15 14 45 45 H 0.97000 * 120.00751 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.37043 * 265.28429 * 27 14 13 47 47 H 1.09004 * 110.36846 * 142.96423 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0048 1.4455 2.1408 6 7 2.0180 3.3201 1.5234 7 6 1.8490 4.2681 2.6418 8 6 2.0250 5.3782 1.5898 9 6 2.7718 4.3261 0.7502 10 6 1.9954 -0.7659 -1.1376 11 1 1.6870 -0.3192 -2.0829 12 6 3.5400 -0.8896 -1.0578 13 6 3.8227 -2.1942 -1.8323 14 7 2.5842 -2.9863 -1.8200 15 6 2.4133 -4.1861 -2.4096 16 8 1.3430 -4.7515 -2.3349 17 6 3.5524 -4.8254 -3.1613 18 16 3.0141 -6.4180 -3.8321 19 6 4.4964 -6.9278 -4.6367 20 1 5.3721 -6.2963 -4.6063 21 6 4.5392 -8.1414 -5.3088 22 7 3.4722 -8.9113 -5.3456 23 14 6.1109 -8.6822 -6.1613 24 1 7.2050 -8.7866 -5.1625 25 1 5.8968 -10.0048 -6.8016 26 1 6.4803 -7.6849 -7.1977 27 6 1.5600 -2.2503 -1.0568 28 1 -0.3634 0.6010 -0.8336 29 1 -0.3634 -1.0225 -0.1036 30 1 -0.3633 0.4214 0.9373 31 1 1.5610 1.9274 -0.8308 32 1 3.0797 1.3444 -0.1082 33 1 2.6528 4.2280 3.3770 34 1 0.8575 4.2446 3.0940 35 1 1.0884 5.7120 1.1432 36 1 2.6559 6.2024 1.9228 37 1 2.5165 4.3475 -0.3093 38 1 3.8467 4.3030 0.9296 39 1 4.0205 -0.0406 -1.5439 40 1 3.8667 -0.9778 -0.0216 41 1 4.6229 -2.7497 -1.3431 42 1 4.1041 -1.9619 -2.8594 43 1 3.8608 -4.1724 -3.9777 44 1 4.3920 -4.9819 -2.4841 45 1 3.5018 -9.7593 -5.8155 46 1 1.5458 -2.5856 -0.0197 47 1 0.5788 -2.3831 -1.5127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188959404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:13 Heat of formation + Delta-G solvation = -10.135420 kcal Electronic energy + Delta-G solvation = -26880.296835 eV Core-core repulsion = 22998.388937 eV Total energy + Delta-G solvation = -3881.907898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.74025 -39.93484 -38.55394 -37.52213 -35.57588 -32.41553 -31.32284 -30.90238 -29.77054 -28.39887 -27.60338 -26.71345 -25.50287 -24.71727 -22.83839 -22.32438 -20.48062 -19.48218 -19.20912 -17.80038 -17.53473 -17.00448 -16.74127 -16.56157 -16.16200 -15.51090 -15.01926 -14.86549 -14.78419 -14.49681 -14.23158 -14.03397 -13.78197 -13.44953 -13.26592 -13.14945 -12.97318 -12.88103 -12.59353 -12.47702 -12.29262 -12.12701 -11.99219 -11.76300 -11.58531 -11.45611 -11.16122 -11.11517 -11.02771 -11.01955 -10.76089 -10.04432 -9.81186 -9.39350 -9.19636 -9.04565 -8.69649 -8.47515 -8.21906 -6.48603 -6.19890 -3.90665 2.16641 2.32083 2.87631 3.08639 3.24275 3.25200 3.29682 3.48964 3.70103 3.79866 3.98179 4.16279 4.22333 4.38047 4.43470 4.51616 4.70918 4.77425 4.81564 4.83548 4.85798 4.99203 5.04592 5.12083 5.12980 5.13611 5.15061 5.22759 5.32623 5.36889 5.48750 5.52737 5.53531 5.63883 5.75255 5.81333 5.84518 5.92950 5.96751 6.15659 6.40163 6.53650 6.72061 7.22152 7.60454 7.69092 7.82661 8.36418 8.57925 9.24971 10.87483 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031637 B = 0.001769 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.830543 B =15827.462981 C =16488.522567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.513 5.513 3 C 0.043 3.957 4 C 0.536 3.464 5 O -0.517 6.517 6 N -0.653 5.653 7 C 0.107 3.893 8 C -0.154 4.154 9 C 0.099 3.901 10 C 0.068 3.932 11 H 0.061 0.939 12 C -0.125 4.125 13 C 0.105 3.895 14 N -0.626 5.626 15 C 0.549 3.451 16 O -0.515 6.515 17 C -0.146 4.146 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.120 3.880 28 H 0.023 0.977 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.078 0.922 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 32.817 12.211 35.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.238 5.238 3 C -0.088 4.088 4 C 0.325 3.675 5 O -0.392 6.392 6 N -0.391 5.391 7 C -0.015 4.015 8 C -0.192 4.192 9 C -0.024 4.024 10 C -0.041 4.041 11 H 0.079 0.921 12 C -0.163 4.163 13 C -0.019 4.019 14 N -0.364 5.364 15 C 0.338 3.662 16 O -0.389 6.389 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.004 4.004 28 H 0.041 0.959 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.260 30.898 13.058 33.568 hybrid contribution 2.174 0.781 -1.417 2.710 sum 0.915 31.679 11.641 33.763 Atomic orbital electron populations 1.22637 0.85907 1.02690 1.02043 1.61647 1.09129 1.11004 1.42009 1.21902 1.02295 0.90013 0.94589 1.20284 0.79177 0.78981 0.89049 1.90703 1.39305 1.62262 1.46925 1.50147 1.56399 1.11656 1.20930 1.23107 1.02662 0.84419 0.91314 1.23513 1.01736 0.96804 0.97118 1.23232 0.97031 0.84436 0.97685 1.22842 0.95343 0.94092 0.91863 0.92117 1.22748 0.94580 0.97044 1.01972 1.21966 0.87888 0.91433 1.00639 1.48420 1.13283 1.19709 1.54996 1.20026 0.89563 0.78717 0.77931 1.90713 1.27529 1.61203 1.59461 1.23502 0.99282 1.04840 1.02032 1.85410 1.19179 1.12103 1.66672 1.22820 0.98566 1.07872 1.39148 0.90982 1.24988 0.97343 0.95402 0.95817 1.70008 1.28187 1.11506 1.40558 0.86226 0.81974 0.77881 0.79418 1.19936 1.20802 1.19966 1.22052 0.92523 0.88620 0.97177 0.95864 0.90696 0.89252 0.91954 0.87697 0.89752 0.90075 0.88934 0.89481 0.89965 0.89412 0.90253 0.89310 0.90938 0.91202 0.89317 0.89250 0.92127 0.90423 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.09 60.07 0.55 0.70 16 2 N -0.51 -5.15 4.40 -233.75 -1.03 -6.17 16 3 C 0.04 0.33 5.08 -4.98 -0.03 0.30 16 4 C 0.54 5.19 7.82 -10.98 -0.09 5.11 16 5 O -0.52 -7.19 15.04 5.56 0.08 -7.10 16 6 N -0.65 -4.32 3.61 -178.72 -0.64 -4.96 16 7 C 0.11 0.50 8.83 -2.97 -0.03 0.48 16 8 C -0.15 -0.31 8.29 -25.81 -0.21 -0.53 16 9 C 0.10 0.27 8.61 -2.97 -0.03 0.24 16 10 C 0.07 0.66 2.71 -65.56 -0.18 0.49 16 11 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 12 C -0.13 -1.04 5.33 -24.89 -0.13 -1.18 16 13 C 0.10 1.14 6.49 -3.06 -0.02 1.12 16 14 N -0.63 -9.49 3.33 -170.52 -0.57 -10.06 16 15 C 0.55 11.00 7.87 -10.99 -0.09 10.91 16 16 O -0.52 -12.38 16.12 5.55 0.09 -12.29 16 17 C -0.15 -3.06 5.35 36.01 0.19 -2.87 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 23 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 27 C 0.12 1.59 5.34 -2.53 -0.01 1.57 16 28 H 0.02 0.21 8.06 -51.93 -0.42 -0.21 16 29 H 0.07 0.79 6.71 -51.93 -0.35 0.44 16 30 H 0.09 1.05 6.00 -51.93 -0.31 0.74 16 31 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 32 H 0.11 0.63 6.75 -51.93 -0.35 0.28 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16 37 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 39 H 0.08 0.46 7.88 -51.93 -0.41 0.05 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.08 1.10 7.68 -51.93 -0.40 0.70 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -38.12 396.05 -10.17 -48.29 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -7.70 Total: -3.89 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 0.13 Total: 3.26 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -1.51 Total: -46.83 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.17 Total: -19.40 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.12 -10.17 -48.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.153 kcal (2) G-P(sol) polarization free energy of solvation -38.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds