Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00010 * 2 1 4 4 C 1.50703 * 109.46979 * 66.04937 * 3 2 1 5 5 O 1.21280 * 119.99833 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99892 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99865 * 180.02562 * 6 4 3 8 8 C 1.53003 * 117.49640 * 223.74460 * 7 6 4 9 9 C 1.53001 * 117.49835 * 155.08383 * 7 6 4 10 10 C 1.46907 * 110.99854 * 236.05064 * 2 1 3 11 11 H 1.09000 * 110.88490 * 64.17826 * 10 2 1 12 12 C 1.55156 * 111.00102 * 188.06282 * 10 2 1 13 13 C 1.54332 * 102.93804 * 153.61361 * 12 10 2 14 14 N 1.47018 * 107.27037 * 337.80160 * 13 12 10 15 15 C 1.34776 * 125.64490 * 178.90568 * 14 13 12 16 16 O 1.21280 * 119.99861 * 180.02562 * 15 14 13 17 17 C 1.50704 * 120.00204 * 0.02766 * 15 14 13 18 18 S 1.81003 * 109.47061 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99573 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00136 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99303 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99183 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00311 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47295 * 89.99726 * 23 21 19 25 25 H 1.48508 * 109.47008 * 209.99993 * 23 21 19 26 26 H 1.48495 * 109.47246 * 329.99406 * 23 21 19 27 27 C 1.47419 * 108.70727 * 359.17355 * 14 13 12 28 28 H 1.08999 * 109.47196 * 189.73610 * 1 2 3 29 29 H 1.09007 * 109.47152 * 309.73422 * 1 2 3 30 30 H 1.08995 * 109.47400 * 69.73309 * 1 2 3 31 31 H 1.09000 * 109.47226 * 186.04588 * 3 2 1 32 32 H 1.09004 * 109.47180 * 306.05096 * 3 2 1 33 33 H 0.97001 * 119.99685 * 359.97438 * 6 4 3 34 34 H 1.08998 * 115.55151 * 9.41375 * 7 6 4 35 35 H 1.08997 * 117.49872 * 359.97438 * 8 7 6 36 36 H 1.09004 * 117.49804 * 145.01758 * 8 7 6 37 37 H 1.09004 * 117.49910 * 214.97106 * 9 7 6 38 38 H 1.08993 * 117.50213 * 359.97438 * 9 7 6 39 39 H 1.09001 * 110.72420 * 35.24822 * 12 10 2 40 40 H 1.09003 * 110.71812 * 271.96894 * 12 10 2 41 41 H 1.09005 * 109.87565 * 218.38514 * 13 12 10 42 42 H 1.08997 * 110.00826 * 97.29872 * 13 12 10 43 43 H 1.08999 * 109.46926 * 59.99804 * 17 15 14 44 44 H 1.09002 * 109.46678 * 299.99851 * 17 15 14 45 45 H 0.97005 * 119.99965 * 180.02562 * 22 21 19 46 46 H 1.08994 * 110.37339 * 142.73695 * 27 14 13 47 47 H 1.08999 * 110.36526 * 265.06530 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0047 1.4455 2.1407 6 7 2.0180 3.3201 1.5234 7 6 1.6700 3.9767 2.7859 8 6 1.1558 5.4160 2.7153 9 6 2.5609 5.1303 3.2512 10 6 1.9954 -0.7659 -1.1377 11 1 1.7205 -0.2969 -2.0824 12 6 3.5336 -0.9374 -1.0286 13 6 3.7930 -2.2387 -1.8166 14 7 2.5314 -2.9931 -1.8410 15 6 2.3369 -4.1787 -2.4517 16 8 1.2488 -4.7125 -2.4070 17 6 3.4714 -4.8411 -3.1901 18 16 2.8996 -6.4071 -3.8952 19 6 4.3822 -6.9496 -4.6778 20 1 5.2753 -6.3452 -4.6205 21 6 4.4023 -8.1543 -5.3669 22 7 5.5099 -8.5597 -5.9511 23 14 2.8575 -9.2000 -5.4652 24 1 2.0727 -8.8121 -6.6646 25 1 3.2352 -10.6329 -5.5628 26 1 2.0368 -8.9864 -4.2463 27 6 1.5126 -2.2349 -1.0923 28 1 -0.3633 -1.0128 0.1738 29 1 -0.3634 0.6570 0.7903 30 1 -0.3634 0.3560 -0.9640 31 1 3.0797 1.3444 -0.1082 32 1 1.5610 1.9274 -0.8309 33 1 2.5233 3.8013 0.8496 34 1 1.2459 3.3278 3.5520 35 1 1.0768 5.8745 1.7296 36 1 0.3935 5.7140 3.4352 37 1 2.7224 5.2405 4.3236 38 1 3.4061 5.4004 2.6183 39 1 3.8362 -1.0501 0.0125 40 1 4.0492 -0.0964 -1.4924 41 1 4.5661 -2.8250 -1.3198 42 1 4.1037 -2.0027 -2.8344 43 1 4.2921 -5.0325 -2.4988 44 1 3.8155 -4.1860 -3.9904 45 1 5.5240 -9.4015 -6.4331 46 1 0.5393 -2.3298 -1.5736 47 1 1.4623 -2.5835 -0.0608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188959805.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = -24.270695 kcal Electronic energy + Delta-G solvation = -26627.179894 eV Core-core repulsion = 22744.659045 eV Total energy + Delta-G solvation = -3882.520849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.58395 -39.85775 -38.22687 -37.40354 -35.66038 -33.38629 -32.43286 -31.31930 -30.05550 -28.85356 -27.73925 -25.63952 -25.10450 -22.98078 -22.94270 -22.40940 -21.13868 -20.45897 -19.39063 -17.87055 -17.60045 -17.17905 -16.82067 -16.64717 -15.90796 -15.35893 -15.26771 -14.97204 -14.86092 -14.68242 -14.57946 -14.13163 -13.82981 -13.52236 -13.42174 -13.15909 -12.98622 -12.82541 -12.61797 -12.47147 -12.28888 -12.17055 -11.92261 -11.80348 -11.51061 -11.25389 -11.20460 -11.18540 -11.08821 -10.99821 -10.60263 -10.18415 -9.84943 -9.52444 -9.28740 -8.99523 -8.77453 -8.56845 -8.48850 -6.91236 -6.28308 -3.99984 2.13683 2.37510 2.69804 2.95531 3.16144 3.33956 3.34087 3.51791 3.53261 3.66851 4.07232 4.18288 4.22906 4.34241 4.36059 4.39349 4.41222 4.65037 4.69718 4.76085 4.79144 4.99570 5.04017 5.09298 5.10978 5.19239 5.21366 5.22602 5.30468 5.35675 5.44227 5.47907 5.54613 5.66134 5.72596 5.76181 5.84074 5.87560 5.98466 6.02393 6.29696 6.45781 6.65372 6.97832 7.57793 7.78202 7.94759 8.42050 8.44155 9.17999 10.80876 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.040738 B = 0.001698 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.160162 B =16489.381921 C =16988.519667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.512 5.512 3 C 0.036 3.964 4 C 0.518 3.482 5 O -0.514 6.514 6 N -0.708 5.708 7 C 0.081 3.919 8 C -0.195 4.195 9 C -0.189 4.189 10 C 0.068 3.932 11 H 0.061 0.939 12 C -0.125 4.125 13 C 0.102 3.898 14 N -0.624 5.624 15 C 0.548 3.452 16 O -0.517 6.517 17 C -0.117 4.117 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.120 3.880 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.024 0.976 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.401 0.599 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.271 0.729 46 H 0.077 0.923 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.542 31.206 15.031 34.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.237 5.237 3 C -0.096 4.096 4 C 0.305 3.695 5 O -0.388 6.388 6 N -0.359 5.359 7 C -0.025 4.025 8 C -0.233 4.233 9 C -0.228 4.228 10 C -0.041 4.041 11 H 0.079 0.921 12 C -0.163 4.163 13 C -0.021 4.021 14 N -0.362 5.362 15 C 0.336 3.664 16 O -0.392 6.392 17 C -0.267 4.267 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.004 4.004 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.043 0.957 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.235 0.765 34 H 0.156 0.844 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.387 29.458 15.979 34.116 hybrid contribution 0.972 0.882 -1.393 1.914 sum -5.416 30.340 14.586 34.097 Atomic orbital electron populations 1.22597 0.85912 1.04020 1.00612 1.61644 1.09117 1.10875 1.42034 1.21959 1.02595 0.90433 0.94565 1.20570 0.79009 0.80859 0.89108 1.90708 1.38247 1.63657 1.46201 1.45390 1.58031 1.13872 1.18623 1.21592 1.03013 0.88988 0.88888 1.23447 0.97536 0.99115 1.03222 1.23394 0.94440 1.02569 1.02375 1.22815 0.95400 0.94086 0.91815 0.92069 1.22744 0.94549 0.96983 1.02004 1.22009 0.87194 0.92169 1.00763 1.48371 1.12176 1.20858 1.54794 1.19984 0.89668 0.78852 0.77880 1.90709 1.26264 1.62364 1.59821 1.23250 0.99332 1.01894 1.02261 1.84804 1.20227 1.18406 1.68184 1.22310 0.96311 1.09966 1.38266 0.89385 1.24704 0.96474 0.96468 0.93598 1.69940 1.26520 1.22100 1.33136 0.86737 0.83697 0.80125 0.81326 1.19217 1.19920 1.15899 1.22009 0.92428 0.88563 0.97368 0.90600 0.89647 0.95733 0.87399 0.91637 0.76471 0.84416 0.88512 0.87952 0.87803 0.88407 0.89184 0.90124 0.90778 0.91056 0.88477 0.88589 0.91952 0.90486 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 8.90 60.06 0.53 0.68 16 2 N -0.51 -4.49 4.40 -233.88 -1.03 -5.52 16 3 C 0.04 0.22 5.34 -4.97 -0.03 0.19 16 4 C 0.52 4.06 7.46 -10.98 -0.08 3.97 16 5 O -0.51 -6.18 13.96 5.56 0.08 -6.10 16 6 N -0.71 -3.59 5.57 -53.81 -0.30 -3.89 16 7 C 0.08 0.44 6.43 -67.93 -0.44 0.01 16 8 C -0.19 -0.75 10.46 -26.69 -0.28 -1.03 16 9 C -0.19 -0.67 10.46 -26.69 -0.28 -0.95 16 10 C 0.07 0.60 2.68 -65.68 -0.18 0.42 16 11 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 12 C -0.12 -0.93 5.45 -24.89 -0.14 -1.07 16 13 C 0.10 1.04 6.49 -3.06 -0.02 1.02 16 14 N -0.62 -8.83 3.33 -170.66 -0.57 -9.40 16 15 C 0.55 10.31 7.87 -10.98 -0.09 10.22 16 16 O -0.52 -11.69 16.12 5.56 0.09 -11.60 16 17 C -0.12 -2.33 5.35 36.01 0.19 -2.14 16 18 S -0.14 -3.67 18.55 -107.50 -1.99 -5.67 16 19 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -26.60 13.97 55.49 0.78 -25.83 16 23 Si 0.86 21.93 27.74 -169.99 -4.72 17.22 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 27 C 0.12 1.46 5.29 -2.65 -0.01 1.45 16 28 H 0.08 0.74 7.38 -51.93 -0.38 0.36 16 29 H 0.08 0.87 5.79 -51.93 -0.30 0.57 16 30 H 0.02 0.20 8.12 -51.93 -0.42 -0.22 16 31 H 0.11 0.45 6.84 -51.93 -0.36 0.10 16 32 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 33 H 0.40 0.89 8.83 -40.82 -0.36 0.53 16 34 H 0.14 0.99 7.40 -51.93 -0.38 0.61 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.41 7.88 -51.93 -0.41 0.00 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 44 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.08 1.02 8.03 -51.93 -0.42 0.60 16 47 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 396.59 15.07 5.98 5.98 Total: -1.00 -36.74 396.59 -9.96 -46.71 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.68 Total: -2.64 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -0.59 Total: 0.73 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -1.12 Total: -44.63 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.17 Total: -17.70 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.72 Total: 17.22 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.74 -9.96 -46.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959805.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.436 kcal (2) G-P(sol) polarization free energy of solvation -36.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds