Wall clock time and date at job start Sat Apr 11 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00010 * 2 1 4 4 C 1.50703 * 109.46979 * 66.04937 * 3 2 1 5 5 O 1.21280 * 119.99833 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99892 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99865 * 180.02562 * 6 4 3 8 8 C 1.53003 * 117.49640 * 223.74460 * 7 6 4 9 9 C 1.53001 * 117.49835 * 155.08383 * 7 6 4 10 10 C 1.46907 * 110.99854 * 236.05064 * 2 1 3 11 11 H 1.09000 * 110.88490 * 64.17826 * 10 2 1 12 12 C 1.55156 * 111.00102 * 188.06282 * 10 2 1 13 13 C 1.54332 * 102.93804 * 153.61361 * 12 10 2 14 14 N 1.47018 * 107.27037 * 337.80160 * 13 12 10 15 15 C 1.34776 * 125.64490 * 178.90568 * 14 13 12 16 16 O 1.21280 * 119.99861 * 180.02562 * 15 14 13 17 17 C 1.50704 * 120.00204 * 0.02766 * 15 14 13 18 18 S 1.81003 * 109.47061 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99573 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00136 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99303 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99183 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00311 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47295 * 89.99726 * 23 21 19 25 25 H 1.48508 * 109.47008 * 209.99993 * 23 21 19 26 26 H 1.48495 * 109.47246 * 329.99406 * 23 21 19 27 27 C 1.47419 * 108.70727 * 359.17355 * 14 13 12 28 28 H 1.08999 * 109.47196 * 189.73610 * 1 2 3 29 29 H 1.09007 * 109.47152 * 309.73422 * 1 2 3 30 30 H 1.08995 * 109.47400 * 69.73309 * 1 2 3 31 31 H 1.09000 * 109.47226 * 186.04588 * 3 2 1 32 32 H 1.09004 * 109.47180 * 306.05096 * 3 2 1 33 33 H 0.97001 * 119.99685 * 359.97438 * 6 4 3 34 34 H 1.08998 * 115.55151 * 9.41375 * 7 6 4 35 35 H 1.08997 * 117.49872 * 359.97438 * 8 7 6 36 36 H 1.09004 * 117.49804 * 145.01758 * 8 7 6 37 37 H 1.09004 * 117.49910 * 214.97106 * 9 7 6 38 38 H 1.08993 * 117.50213 * 359.97438 * 9 7 6 39 39 H 1.09001 * 110.72420 * 35.24822 * 12 10 2 40 40 H 1.09003 * 110.71812 * 271.96894 * 12 10 2 41 41 H 1.09005 * 109.87565 * 218.38514 * 13 12 10 42 42 H 1.08997 * 110.00826 * 97.29872 * 13 12 10 43 43 H 1.08999 * 109.46926 * 59.99804 * 17 15 14 44 44 H 1.09002 * 109.46678 * 299.99851 * 17 15 14 45 45 H 0.97005 * 119.99965 * 180.02562 * 22 21 19 46 46 H 1.08994 * 110.37339 * 142.73695 * 27 14 13 47 47 H 1.08999 * 110.36526 * 265.06530 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0047 1.4455 2.1407 6 7 2.0180 3.3201 1.5234 7 6 1.6700 3.9767 2.7859 8 6 1.1558 5.4160 2.7153 9 6 2.5609 5.1303 3.2512 10 6 1.9954 -0.7659 -1.1377 11 1 1.7205 -0.2969 -2.0824 12 6 3.5336 -0.9374 -1.0286 13 6 3.7930 -2.2387 -1.8166 14 7 2.5314 -2.9931 -1.8410 15 6 2.3369 -4.1787 -2.4517 16 8 1.2488 -4.7125 -2.4070 17 6 3.4714 -4.8411 -3.1901 18 16 2.8996 -6.4071 -3.8952 19 6 4.3822 -6.9496 -4.6778 20 1 5.2753 -6.3452 -4.6205 21 6 4.4023 -8.1543 -5.3669 22 7 5.5099 -8.5597 -5.9511 23 14 2.8575 -9.2000 -5.4652 24 1 2.0727 -8.8121 -6.6646 25 1 3.2352 -10.6329 -5.5628 26 1 2.0368 -8.9864 -4.2463 27 6 1.5126 -2.2349 -1.0923 28 1 -0.3633 -1.0128 0.1738 29 1 -0.3634 0.6570 0.7903 30 1 -0.3634 0.3560 -0.9640 31 1 3.0797 1.3444 -0.1082 32 1 1.5610 1.9274 -0.8309 33 1 2.5233 3.8013 0.8496 34 1 1.2459 3.3278 3.5520 35 1 1.0768 5.8745 1.7296 36 1 0.3935 5.7140 3.4352 37 1 2.7224 5.2405 4.3236 38 1 3.4061 5.4004 2.6183 39 1 3.8362 -1.0501 0.0125 40 1 4.0492 -0.0964 -1.4924 41 1 4.5661 -2.8250 -1.3198 42 1 4.1037 -2.0027 -2.8344 43 1 4.2921 -5.0325 -2.4988 44 1 3.8155 -4.1860 -3.9904 45 1 5.5240 -9.4015 -6.4331 46 1 0.5393 -2.3298 -1.5736 47 1 1.4623 -2.5835 -0.0608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188959805.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:10 Heat of formation + Delta-G solvation = -51.885219 kcal Electronic energy + Delta-G solvation = -26628.377350 eV Core-core repulsion = 22744.659045 eV Total energy + Delta-G solvation = -3883.718305 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35941 -40.78909 -39.16719 -38.01640 -36.55968 -34.67540 -33.88214 -32.46862 -31.04623 -29.81821 -28.56241 -27.85135 -25.96047 -23.85386 -23.25684 -22.88477 -21.69896 -21.14134 -20.73968 -19.61474 -18.40091 -18.01472 -17.89302 -17.36894 -17.13101 -16.73166 -16.44932 -16.09518 -15.67192 -15.62851 -15.49908 -15.22666 -14.92254 -14.81470 -14.36092 -14.26807 -13.91897 -13.80867 -13.58877 -13.43581 -13.34142 -13.08726 -13.01863 -12.89352 -12.65765 -12.46773 -12.37579 -12.16403 -11.93890 -11.87896 -11.82586 -11.44340 -11.17324 -11.07533 -10.80603 -10.54498 -9.75807 -9.71771 -9.36912 -9.01688 -8.51850 -6.23156 0.94740 1.30851 1.44065 1.48511 1.51978 1.60505 1.87430 2.11035 2.24925 2.67039 2.86466 2.93482 3.00905 3.28267 3.62241 3.73793 3.77710 3.86318 4.02876 4.06930 4.09111 4.16277 4.22660 4.30452 4.33479 4.40109 4.41094 4.52007 4.56316 4.66507 4.78435 4.79508 4.84486 4.85477 4.96304 5.03917 5.07848 5.19359 5.22145 5.26945 5.55926 5.70688 5.85413 5.98265 6.11080 6.32878 6.58711 6.93435 7.02318 7.30767 8.60391 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.040738 B = 0.001698 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.160162 B =16489.381921 C =16988.519667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.528 5.528 3 C 0.039 3.961 4 C 0.514 3.486 5 O -0.567 6.567 6 N -0.692 5.692 7 C 0.055 3.945 8 C -0.187 4.187 9 C -0.175 4.175 10 C 0.081 3.919 11 H 0.075 0.925 12 C -0.111 4.111 13 C 0.090 3.910 14 N -0.615 5.615 15 C 0.547 3.453 16 O -0.566 6.566 17 C -0.100 4.100 18 S -0.179 6.179 19 C -0.528 4.528 20 H 0.064 0.936 21 C 0.049 3.951 22 N -0.915 5.915 23 Si 0.912 3.088 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.239 1.239 27 C 0.115 3.885 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.418 0.582 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.277 0.723 46 H 0.061 0.939 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.697 34.014 14.853 37.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.253 5.253 3 C -0.092 4.092 4 C 0.301 3.699 5 O -0.445 6.445 6 N -0.344 5.344 7 C -0.051 4.051 8 C -0.225 4.225 9 C -0.213 4.213 10 C -0.028 4.028 11 H 0.093 0.907 12 C -0.149 4.149 13 C -0.032 4.032 14 N -0.350 5.350 15 C 0.335 3.665 16 O -0.445 6.445 17 C -0.251 4.251 18 S 0.048 5.952 19 C -0.676 4.676 20 H 0.083 0.917 21 C -0.157 4.157 22 N -0.553 5.553 23 Si 0.734 3.266 24 H -0.186 1.186 25 H -0.182 1.182 26 H -0.164 1.164 27 C -0.008 4.008 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.153 0.847 32 H 0.109 0.891 33 H 0.255 0.745 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.483 32.357 15.803 36.425 hybrid contribution 0.767 0.209 -1.223 1.458 sum -4.716 32.566 14.581 35.992 Atomic orbital electron populations 1.22466 0.86671 1.02767 1.00704 1.61549 1.08684 1.12884 1.42176 1.22065 1.04144 0.88832 0.94128 1.20972 0.78293 0.81356 0.89247 1.90697 1.40794 1.65019 1.47959 1.45246 1.57222 1.13142 1.18775 1.21550 1.05217 0.89440 0.88891 1.23496 0.97911 0.97291 1.03840 1.23461 0.94647 1.00241 1.02912 1.22675 0.96180 0.91468 0.92437 0.90740 1.22760 0.93467 0.96678 1.01983 1.22411 0.85316 0.93085 1.02433 1.48320 1.14390 1.19467 1.52802 1.19709 0.88478 0.80065 0.78269 1.90688 1.27694 1.64115 1.61994 1.23187 1.00041 0.98867 1.02970 1.84770 1.19246 1.22649 1.68539 1.22433 0.96751 1.09917 1.38450 0.91745 1.25514 0.99205 0.97657 0.93333 1.70010 1.28279 1.22969 1.34012 0.85898 0.80223 0.79297 0.81157 1.18626 1.18220 1.16351 1.22113 0.91580 0.91018 0.96072 0.92211 0.90900 0.94569 0.84691 0.89117 0.74510 0.87020 0.87474 0.87882 0.87482 0.86931 0.89203 0.86166 0.90228 0.89483 0.87077 0.86762 0.91338 0.92016 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.90 127.69 1.14 1.53 16 2 N -0.53 -8.21 4.40 -893.86 -3.93 -12.14 16 3 C 0.04 0.34 5.34 85.56 0.46 0.80 16 4 C 0.51 7.30 7.46 87.66 0.65 7.96 16 5 O -0.57 -13.83 13.96 -3.03 -0.04 -13.87 16 6 N -0.69 -5.67 5.57 -442.54 -2.46 -8.14 16 7 C 0.06 0.55 6.43 44.99 0.29 0.84 16 8 C -0.19 -1.12 10.46 30.62 0.32 -0.80 16 9 C -0.17 -0.89 10.46 30.62 0.32 -0.57 16 10 C 0.08 1.20 2.68 46.23 0.12 1.32 16 11 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 12 C -0.11 -1.20 5.45 31.79 0.17 -1.02 16 13 C 0.09 1.53 6.49 86.73 0.56 2.10 16 14 N -0.61 -16.50 3.33 -812.23 -2.70 -19.20 16 15 C 0.55 20.30 7.87 87.66 0.69 20.99 16 16 O -0.57 -25.95 16.12 -3.03 -0.05 -26.00 16 17 C -0.10 -3.89 5.35 71.24 0.38 -3.51 16 18 S -0.18 -9.22 18.55 -56.49 -1.05 -10.27 16 19 C -0.53 -30.88 10.04 67.96 0.68 -30.19 16 20 H 0.06 3.94 8.03 -2.91 -0.02 3.92 16 21 C 0.05 2.86 5.50 84.86 0.47 3.32 16 22 N -0.91 -55.61 13.97 21.65 0.30 -55.30 16 23 Si 0.91 45.36 27.74 68.60 1.90 47.26 16 24 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.24 -12.01 6.74 99.48 0.67 -11.34 16 27 C 0.12 2.73 5.29 86.78 0.46 3.19 16 28 H 0.06 1.22 7.38 -2.39 -0.02 1.20 16 29 H 0.07 1.51 5.79 -2.38 -0.01 1.50 16 30 H 0.04 0.54 8.12 -2.39 -0.02 0.52 16 31 H 0.14 0.46 6.84 -2.39 -0.02 0.44 16 32 H 0.09 0.40 8.12 -2.38 -0.02 0.38 16 33 H 0.42 0.51 8.83 -92.71 -0.82 -0.31 16 34 H 0.11 1.73 7.40 -2.39 -0.02 1.71 16 35 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.12 0.45 7.88 -2.39 -0.02 0.43 16 41 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.11 4.01 8.14 -2.40 -0.02 4.00 16 44 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 45 H 0.28 15.57 8.31 -92.70 -0.77 14.80 16 46 H 0.06 1.65 8.03 -2.39 -0.02 1.63 16 47 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -82.90 396.59 -1.20 -84.10 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.12 Total: 7.62 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 6.72 Total: 5.95 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -8.80 Total: -94.79 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.09 Total: -39.87 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.26 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.05 Total: -10.27 kcal Total: -82.90 -1.20 -84.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959805.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.214 kcal (2) G-P(sol) polarization free energy of solvation -82.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds