Wall clock time and date at job start Sat Apr 11 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00165 * 2 1 4 4 H 1.08987 * 110.89065 * 297.50975 * 3 2 1 5 5 C 1.55155 * 111.00344 * 173.58092 * 3 2 1 6 6 C 1.54318 * 102.94455 * 206.42751 * 5 3 2 7 7 N 1.47018 * 107.27074 * 22.19663 * 6 5 3 8 8 C 1.34779 * 125.65077 * 181.09637 * 7 6 5 9 9 O 1.21280 * 120.00509 * 179.97438 * 8 7 6 10 10 C 1.50703 * 119.99784 * 359.95693 * 8 7 6 11 11 S 1.80998 * 109.47180 * 180.02562 * 10 8 7 12 12 C 1.76203 * 100.00214 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99798 * 359.97438 * 12 11 10 14 14 C 1.38798 * 120.00149 * 180.02562 * 12 11 10 15 15 N 1.31625 * 120.00137 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99866 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47078 * 90.00331 * 16 14 12 18 18 H 1.48502 * 109.46753 * 210.00529 * 16 14 12 19 19 H 1.48500 * 109.47083 * 330.00323 * 16 14 12 20 20 C 1.47417 * 108.70510 * 1.05931 * 7 6 5 21 21 C 1.46900 * 110.99921 * 236.04825 * 2 1 3 22 22 H 1.08996 * 110.54025 * 177.54874 * 21 2 1 23 23 C 1.54629 * 110.48627 * 300.16445 * 21 2 1 24 24 C 1.54653 * 101.68615 * 93.66544 * 23 21 2 25 25 N 1.46766 * 105.38472 * 25.76799 * 24 23 21 26 26 C 1.46501 * 124.35296 * 162.85380 * 25 24 23 27 27 C 1.34429 * 111.29655 * 342.58729 * 25 24 23 28 28 O 1.21280 * 124.94186 * 180.69290 * 27 25 24 29 29 H 1.08992 * 109.47316 * 189.54853 * 1 2 3 30 30 H 1.09002 * 109.47108 * 309.55624 * 1 2 3 31 31 H 1.09004 * 109.46843 * 69.55089 * 1 2 3 32 32 H 1.09000 * 110.72477 * 324.79638 * 5 3 2 33 33 H 1.09007 * 110.71955 * 88.06487 * 5 3 2 34 34 H 1.08997 * 109.88521 * 262.77630 * 6 5 3 35 35 H 1.09004 * 110.01313 * 141.68286 * 6 5 3 36 36 H 1.09005 * 109.46996 * 299.99805 * 10 8 7 37 37 H 1.08999 * 109.47236 * 60.00285 * 10 8 7 38 38 H 0.96998 * 120.00312 * 179.97438 * 15 14 12 39 39 H 1.09003 * 110.37245 * 217.03430 * 20 7 6 40 40 H 1.08997 * 110.46081 * 94.75430 * 20 7 6 41 41 H 1.09005 * 110.96762 * 212.00069 * 23 21 2 42 42 H 1.08997 * 110.97219 * 335.72048 * 23 21 2 43 43 H 1.09001 * 110.39908 * 266.74291 * 24 23 21 44 44 H 1.08997 * 110.18226 * 144.68002 * 24 23 21 45 45 H 1.08999 * 109.46725 * 179.72346 * 26 25 24 46 46 H 1.08997 * 109.46976 * 299.72493 * 26 25 24 47 47 H 1.08998 * 109.46892 * 59.72728 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.6957 1.9028 -0.9031 5 6 3.5386 1.3747 0.1619 6 6 3.8153 2.7480 0.8092 7 7 2.5706 3.1826 1.4598 8 6 2.3935 4.3442 2.1201 9 8 1.3184 4.5999 2.6197 10 6 3.5315 5.3250 2.2378 11 16 2.9844 6.7744 3.1739 12 6 4.4670 7.7264 3.1580 13 1 5.3473 7.3466 2.6608 14 6 4.5038 8.9640 3.7854 15 7 5.6115 9.6750 3.7740 16 14 2.9814 9.6205 4.6460 17 1 2.9852 9.1793 6.0638 18 1 2.9820 11.1045 4.5893 19 1 1.7667 9.0998 3.9688 20 6 1.5480 2.1379 1.2697 21 6 1.9954 -0.7659 -1.1376 22 1 3.0845 -0.7250 -1.1550 23 6 1.5099 -2.2326 -1.0736 24 6 0.2400 -2.1809 -1.9548 25 7 0.4511 -1.0585 -2.8765 26 6 -0.3066 -0.8503 -4.1130 27 6 1.4252 -0.2427 -2.4375 28 8 1.7931 0.7661 -3.0012 29 1 -0.3633 -1.0133 0.1705 30 1 -0.3633 0.6545 0.7923 31 1 -0.3633 0.3591 -0.9630 32 1 3.8591 0.5667 0.8196 33 1 4.0284 1.3003 -0.8090 34 1 4.1040 3.4675 0.0431 35 1 4.6092 2.6577 1.5507 36 1 4.3663 4.8525 2.7555 37 1 3.8494 5.6340 1.2421 38 1 5.6371 10.5400 4.2121 39 1 0.5683 2.5897 1.1144 40 1 1.5239 1.4675 2.1288 41 1 2.2543 -2.9087 -1.4944 42 1 1.2614 -2.5171 -0.0512 43 1 -0.6422 -2.0031 -1.3398 44 1 0.1309 -3.1112 -2.5122 45 1 0.0445 0.0561 -4.6060 46 1 -0.1622 -1.7036 -4.7756 47 1 -1.3659 -0.7486 -3.8771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188974138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:14 Heat of formation + Delta-G solvation = -40.129446 kcal Electronic energy + Delta-G solvation = -27889.916858 eV Core-core repulsion = 24006.708321 eV Total energy + Delta-G solvation = -3883.208536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55835 -39.78673 -37.84625 -36.99325 -35.63147 -32.45798 -32.40318 -31.00649 -29.80164 -28.26282 -27.89329 -27.25116 -25.60297 -25.01530 -22.88350 -22.05898 -21.04448 -19.54465 -19.37254 -17.83121 -17.58281 -17.15311 -16.66049 -16.54295 -16.06231 -15.38313 -15.06840 -14.97254 -14.63874 -14.45610 -14.22451 -14.06269 -13.80926 -13.61361 -13.24343 -13.21720 -13.06052 -12.98436 -12.80955 -12.72135 -12.58311 -12.49074 -11.98133 -11.87766 -11.71597 -11.34217 -11.22129 -11.14791 -11.06957 -10.97937 -10.65020 -10.57144 -9.83072 -9.49691 -9.23142 -8.97315 -8.80261 -8.53127 -8.46353 -6.88618 -6.25829 -3.97325 2.03713 2.49805 2.68413 2.98119 3.13313 3.35539 3.43895 3.53529 3.65935 3.83510 3.89136 4.13305 4.33382 4.36202 4.45001 4.47063 4.72252 4.76947 4.79842 4.86439 4.88904 4.91751 5.00357 5.08507 5.13082 5.14472 5.23338 5.24312 5.24992 5.31692 5.37685 5.52311 5.56188 5.64086 5.70710 5.71841 5.82484 5.93227 5.95471 6.06753 6.31939 6.39223 6.54426 6.58094 7.61558 7.67792 7.97305 8.45000 8.47110 9.20370 10.83384 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028431 B = 0.002116 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.619344 B =13230.873787 C =13342.862653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.499 5.499 3 C 0.060 3.940 4 H 0.073 0.927 5 C -0.121 4.121 6 C 0.103 3.897 7 N -0.623 5.623 8 C 0.548 3.452 9 O -0.519 6.519 10 C -0.117 4.117 11 S -0.143 6.143 12 C -0.520 4.520 13 H 0.088 0.912 14 C 0.095 3.905 15 N -0.881 5.881 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C 0.121 3.879 21 C 0.052 3.948 22 H 0.120 0.880 23 C -0.127 4.127 24 C 0.095 3.905 25 N -0.623 5.623 26 C 0.091 3.909 27 C 0.487 3.513 28 O -0.522 6.522 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.030 0.970 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.270 0.730 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.594 -30.813 -13.674 35.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.223 5.223 3 C -0.049 4.049 4 H 0.091 0.909 5 C -0.159 4.159 6 C -0.021 4.021 7 N -0.360 5.360 8 C 0.337 3.663 9 O -0.394 6.394 10 C -0.267 4.267 11 S 0.083 5.917 12 C -0.667 4.667 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.159 1.159 20 C -0.003 4.003 21 C -0.060 4.060 22 H 0.138 0.862 23 C -0.165 4.165 24 C -0.028 4.028 25 N -0.359 5.359 26 C -0.051 4.051 27 C 0.272 3.728 28 O -0.397 6.397 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.081 0.919 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.791 -29.840 -12.777 34.207 hybrid contribution 0.490 0.490 -1.081 1.284 sum -10.301 -29.350 -13.859 34.053 Atomic orbital electron populations 1.22724 0.86836 1.03180 1.01322 1.62367 1.08392 1.13482 1.38094 1.22946 0.95741 0.87930 0.98274 0.90930 1.22688 0.94395 0.97130 1.01720 1.22016 0.87412 0.95615 0.97038 1.48349 1.13165 1.18426 1.56103 1.19981 0.89522 0.80004 0.76810 1.90699 1.27169 1.75322 1.46174 1.23249 0.99246 0.98901 1.05333 1.84771 1.21182 1.14881 1.70851 1.22310 0.96900 1.05811 1.41702 0.89364 1.24711 0.96377 0.95423 0.94828 1.69936 1.26359 1.12795 1.42628 0.86732 0.84667 0.79025 0.81417 1.19204 1.19967 1.15924 1.22048 0.92452 0.89229 0.96552 1.22655 1.02062 0.94598 0.86648 0.86189 1.22737 0.96912 0.94852 1.01984 1.22331 0.98940 0.89635 0.91887 1.48285 1.37169 1.26871 1.23540 1.21579 0.95670 1.02790 0.85056 1.21983 0.80007 0.83471 0.87339 1.90752 1.62477 1.24604 1.61833 0.90303 0.90286 0.95096 0.89342 0.89887 0.91039 0.90739 0.88495 0.88502 0.91967 0.90758 0.90514 0.89091 0.87719 0.90580 0.90171 0.89938 0.91949 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 7.98 60.07 0.48 0.53 16 2 N -0.50 -3.94 4.65 -224.36 -1.04 -4.98 16 3 C 0.06 0.62 2.43 -65.56 -0.16 0.46 16 4 H 0.07 0.94 6.76 -51.94 -0.35 0.59 16 5 C -0.12 -1.10 5.39 -24.90 -0.13 -1.24 16 6 C 0.10 1.18 6.49 -3.07 -0.02 1.16 16 7 N -0.62 -9.30 3.33 -170.53 -0.57 -9.86 16 8 C 0.55 10.64 7.87 -10.98 -0.09 10.56 16 9 O -0.52 -11.90 16.12 5.56 0.09 -11.81 16 10 C -0.12 -2.40 5.35 36.01 0.19 -2.21 16 11 S -0.14 -3.75 18.55 -107.50 -1.99 -5.74 16 12 C -0.52 -15.27 10.04 30.94 0.31 -14.96 16 13 H 0.09 2.70 8.03 -52.49 -0.42 2.27 16 14 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 15 N -0.88 -26.92 13.97 55.49 0.78 -26.14 16 16 Si 0.86 22.17 27.74 -169.99 -4.72 17.45 16 17 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.24 -6.10 6.74 56.52 0.38 -5.71 16 20 C 0.12 1.52 5.31 -2.53 -0.01 1.50 16 21 C 0.05 0.36 3.01 -67.72 -0.20 0.16 16 22 H 0.12 0.80 7.00 -51.93 -0.36 0.43 16 23 C -0.13 -0.45 6.26 -25.01 -0.16 -0.60 16 24 C 0.09 0.34 6.45 -3.03 -0.02 0.32 16 25 N -0.62 -4.23 2.95 -180.18 -0.53 -4.76 16 26 C 0.09 0.51 11.14 59.85 0.67 1.17 16 27 C 0.49 4.65 5.63 -10.86 -0.06 4.59 16 28 O -0.52 -7.25 16.20 5.56 0.09 -7.16 16 29 H 0.08 0.38 5.67 -51.93 -0.29 0.09 16 30 H 0.08 0.62 6.69 -51.93 -0.35 0.27 16 31 H 0.03 0.26 6.47 -51.93 -0.34 -0.07 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.71 7.97 -51.92 -0.41 0.29 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.85 8.14 -51.91 -0.42 1.43 16 37 H 0.10 1.88 8.14 -51.92 -0.42 1.46 16 38 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.07 1.02 7.69 -51.93 -0.40 0.62 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.10 0.29 7.77 -51.93 -0.40 -0.11 16 43 H 0.08 0.23 6.25 -51.93 -0.32 -0.10 16 44 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 45 H 0.08 0.61 7.53 -51.93 -0.39 0.22 16 46 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 47 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -37.29 380.86 -8.89 -46.18 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -7.43 Total: -3.09 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 0.70 Total: 4.17 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -1.37 Total: -45.74 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.18 Total: -18.97 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.72 Total: 17.45 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.99 Total: -5.74 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.29 -8.89 -46.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188974138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.050 kcal (2) G-P(sol) polarization free energy of solvation -37.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds